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Carg18636-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCGGAGGAAGAAACAGGTTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCTCCCCATCTCCTCTTCACCATTAGCACAACCTCTCTCCACTCTCCTTTCGTTTCCACCCTCTTTCCCCACCAATATGCCCACGGTAACGTCACCCATTTTCTTTTACCTTCTTTTTGTTACTATTATGTATCATACAAATGTTTCCTCTTTTTGTTGTGTTCAGTTGGATGGAACTACTTGCAAATGGGTTCCGGGAGGAAAATCGACCCTGAGCCTGGAAGGTGCCGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCCCGGATTCTAAGTACTGTGAGAGACATATGCACCGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACTCATTCCCCGCCCATTTCTTCCATCACCCACAACTCCACTCTCCCCTCTGAAACTCATTCCCAACACCTCCACCCTTTTCTCTACCAACATGGCTCTTCTTCTGCGCCCCAAAACTCCATCACTTCCTTGCTTCTTGACCCACATTACAGGTTTGTATCTCCAAAAGAACAAAAAAGTTGATTTTGTGTGATGTCCCACATTGGTTGGAGAGGAGAACGAAACACACTTTATAAGGGTGTAGAAACCTCCCACTAGCAGACGCGTTTTAAAGCTTTGAGGGAAAACTCGAAAAGAAAAGTCCAAAGAGGACAATATCTGCTAGTGGTGGACATGAGCGGTTACATTTTGTTTATGAGATTTGTTTGGAGGTTAAGCTGATGGTTTTACCCTTTTCTTGTGACTGTGAAGAAGAAACAGGTATGGTTATGGGGTGAAGGAAGATGTTGTTGATGAGCATCGCTTTCTATCAGAAGAACGCGGTGGGAACATGAGAGGCTTCTCTGCTTCGAATATGGAAGATTCCTGGGAGCTGAGTCCTCTAACAATGAGCTGCTCTTCCTCATCCTTCAGACACAAGAACTGCTCGCCTTTACAAGGTGGTGACTATTCGTATAAGGAACCAGAGAAGGGTATGCATCACTTCCTTGATGAATGGTCTCCAAAAGACACAGAATCGTGGGTTGATTTGAATACCACTCGGCTTTCGATCTCTATTCCTAACTCCTCGCAGCATGAGTTCCGTTCCAACAACAAGCATAACCAAAATCCATGA ATGAGCGGAGGAAGAAACAGGTTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCTCCCCATCTCCTCTTCACCATTAGCACAACCTCTCTCCACTCTCCTTTCGTTTCCACCCTCTTTCCCCACCAATATGCCCACGTTGGATGGAACTACTTGCAAATGGGTTCCGGGAGGAAAATCGACCCTGAGCCTGGAAGGTGCCGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCCCGGATTCTAAGTACTGTGAGAGACATATGCACCGAGAAGAACGCGGTGGGAACATGAGAGGCTTCTCTGCTTCGAATATGGAAGATTCCTGGGAGCTGAGTCCTCTAACAATGAGCTGCTCTTCCTCATCCTTCAGACACAAGAACTGCTCGCCTTTACAAGGTGGTGACTATTCGTATAAGGAACCAGAGAAGGGTATGCATCACTTCCTTGATGAATGGTCTCCAAAAGACACAGAATCGTGGGTTGATTTGAATACCACTCGGCTTTCGATCTCTATTCCTAACTCCTCGCAGCATGAGTTCCGTTCCAACAACAAGCATAACCAAAATCCATGA ATGAGCGGAGGAAGAAACAGGTTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCTCCCCATCTCCTCTTCACCATTAGCACAACCTCTCTCCACTCTCCTTTCGTTTCCACCCTCTTTCCCCACCAATATGCCCACGTTGGATGGAACTACTTGCAAATGGGTTCCGGGAGGAAAATCGACCCTGAGCCTGGAAGGTGCCGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCCCGGATTCTAAGTACTGTGAGAGACATATGCACCGAGAAGAACGCGGTGGGAACATGAGAGGCTTCTCTGCTTCGAATATGGAAGATTCCTGGGAGCTGAGTCCTCTAACAATGAGCTGCTCTTCCTCATCCTTCAGACACAAGAACTGCTCGCCTTTACAAGGTGGTGACTATTCGTATAAGGAACCAGAGAAGGGTATGCATCACTTCCTTGATGAATGGTCTCCAAAAGACACAGAATCGTGGGTTGATTTGAATACCACTCGGCTTTCGATCTCTATTCCTAACTCCTCGCAGCATGAGTTCCGTTCCAACAACAAGCATAACCAAAATCCATGA MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQYAHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSYKEPEKGMHHFLDEWSPKDTESWVDLNTTRLSISIPNSSQHEFRSNNKHNQNP Homology
BLAST of Carg18636-RA vs. NCBI nr
Match: KAG7021343.1 (Growth-regulating factor 5, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 448.4 bits (1152), Expect = 3.5e-122 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg18636-RA vs. NCBI nr
Match: KAG6586484.1 (Growth-regulating factor 5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 408.7 bits (1049), Expect = 3.1e-110 Identity = 209/296 (70.61%), Postives = 209/296 (70.61%), Query Frame = 0
BLAST of Carg18636-RA vs. NCBI nr
Match: XP_023537381.1 (growth-regulating factor 1-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105 Identity = 200/293 (68.26%), Postives = 204/293 (69.62%), Query Frame = 0
BLAST of Carg18636-RA vs. NCBI nr
Match: XP_023537380.1 (growth-regulating factor 5-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 392.1 bits (1006), Expect = 3.0e-105 Identity = 200/295 (67.80%), Postives = 204/295 (69.15%), Query Frame = 0
BLAST of Carg18636-RA vs. NCBI nr
Match: XP_023537378.1 (growth-regulating factor 5-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537379.1 growth-regulating factor 5-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 391.7 bits (1005), Expect = 3.9e-105 Identity = 200/296 (67.57%), Postives = 204/296 (68.92%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy Swiss-Prot
Match: Q8L8A6 (Growth-regulating factor 5 OS=Arabidopsis thaliana OX=3702 GN=GRF5 PE=1 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 6.2e-37 Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy Swiss-Prot
Match: Q9ZQ12 (Growth-regulating factor 6 OS=Arabidopsis thaliana OX=3702 GN=GRF6 PE=1 SV=2) HSP 1 Score: 152.9 bits (385), Expect = 4.0e-36 Identity = 82/183 (44.81%), Postives = 107/183 (58.47%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy Swiss-Prot
Match: A2XA73 (Growth-regulating factor 1 OS=Oryza sativa subsp. indica OX=39946 GN=GRF1 PE=2 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.9e-33 Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy Swiss-Prot
Match: Q6AWY8 (Growth-regulating factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF1 PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.9e-33 Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy Swiss-Prot
Match: Q6AWY7 (Growth-regulating factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF2 PE=3 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 6.8e-28 Identity = 64/118 (54.24%), Postives = 78/118 (66.10%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy TrEMBL
Match: A0A1S4E0X8 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 2.6e-70 Identity = 154/313 (49.20%), Postives = 178/313 (56.87%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy TrEMBL
Match: A0A1S3CAW1 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 3.4e-70 Identity = 154/314 (49.04%), Postives = 177/314 (56.37%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy TrEMBL
Match: A0A1S4E0W5 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 4.4e-70 Identity = 154/315 (48.89%), Postives = 178/315 (56.51%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy TrEMBL
Match: A0A5A7V1P5 (Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001220 PE=3 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 5.7e-70 Identity = 154/316 (48.73%), Postives = 178/316 (56.33%), Query Frame = 0
BLAST of Carg18636-RA vs. ExPASy TrEMBL
Match: A0A1S4E0W0 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 5.7e-70 Identity = 154/316 (48.73%), Postives = 178/316 (56.33%), Query Frame = 0
BLAST of Carg18636-RA vs. TAIR 10
Match: AT3G13960.1 (growth-regulating factor 5 ) HSP 1 Score: 155.6 bits (392), Expect = 4.4e-38 Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0
BLAST of Carg18636-RA vs. TAIR 10
Match: AT2G06200.1 (growth-regulating factor 6 ) HSP 1 Score: 152.9 bits (385), Expect = 2.8e-37 Identity = 82/183 (44.81%), Postives = 107/183 (58.47%), Query Frame = 0
BLAST of Carg18636-RA vs. TAIR 10
Match: AT2G22840.1 (growth-regulating factor 1 ) HSP 1 Score: 112.5 bits (280), Expect = 4.2e-25 Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 0
BLAST of Carg18636-RA vs. TAIR 10
Match: AT4G37740.1 (growth-regulating factor 2 ) HSP 1 Score: 112.5 bits (280), Expect = 4.2e-25 Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 0
BLAST of Carg18636-RA vs. TAIR 10
Match: AT2G36400.1 (growth-regulating factor 3 ) HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23 Identity = 59/112 (52.68%), Postives = 70/112 (62.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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