Carg18636 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18636
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGrowth-regulating factor
LocationCarg_Chr12: 11916386 .. 11917616 (+)
RNA-Seq ExpressionCarg18636
SyntenyCarg18636
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGAGGAAGAAACAGGTTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCTCCCCATCTCCTCTTCACCATTAGCACAACCTCTCTCCACTCTCCTTTCGTTTCCACCCTCTTTCCCCACCAATATGCCCACGGTAACGTCACCCATTTTCTTTTACCTTCTTTTTGTTACTATTATGTATCATACAAATGTTTCCTCTTTTTGTTGTGTTCAGTTGGATGGAACTACTTGCAAATGGGTTCCGGGAGGAAAATCGACCCTGAGCCTGGAAGGTGCCGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCCCGGATTCTAAGTACTGTGAGAGACATATGCACCGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACTCATTCCCCGCCCATTTCTTCCATCACCCACAACTCCACTCTCCCCTCTGAAACTCATTCCCAACACCTCCACCCTTTTCTCTACCAACATGGCTCTTCTTCTGCGCCCCAAAACTCCATCACTTCCTTGCTTCTTGACCCACATTACAGGTTTGTATCTCCAAAAGAACAAAAAAGTTGATTTTGTGTGATGTCCCACATTGGTTGGAGAGGAGAACGAAACACACTTTATAAGGGTGTAGAAACCTCCCACTAGCAGACGCGTTTTAAAGCTTTGAGGGAAAACTCGAAAAGAAAAGTCCAAAGAGGACAATATCTGCTAGTGGTGGACATGAGCGGTTACATTTTGTTTATGAGATTTGTTTGGAGGTTAAGCTGATGGTTTTACCCTTTTCTTGTGACTGTGAAGAAGAAACAGGTATGGTTATGGGGTGAAGGAAGATGTTGTTGATGAGCATCGCTTTCTATCAGAAGAACGCGGTGGGAACATGAGAGGCTTCTCTGCTTCGAATATGGAAGATTCCTGGGAGCTGAGTCCTCTAACAATGAGCTGCTCTTCCTCATCCTTCAGACACAAGAACTGCTCGCCTTTACAAGGTGGTGACTATTCGTATAAGGAACCAGAGAAGGGTATGCATCACTTCCTTGATGAATGGTCTCCAAAAGACACAGAATCGTGGGTTGATTTGAATACCACTCGGCTTTCGATCTCTATTCCTAACTCCTCGCAGCATGAGTTCCGTTCCAACAACAAGCATAACCAAAATCCATGA

mRNA sequence

ATGAGCGGAGGAAGAAACAGGTTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCTCCCCATCTCCTCTTCACCATTAGCACAACCTCTCTCCACTCTCCTTTCGTTTCCACCCTCTTTCCCCACCAATATGCCCACGTTGGATGGAACTACTTGCAAATGGGTTCCGGGAGGAAAATCGACCCTGAGCCTGGAAGGTGCCGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCCCGGATTCTAAGTACTGTGAGAGACATATGCACCGAGAAGAACGCGGTGGGAACATGAGAGGCTTCTCTGCTTCGAATATGGAAGATTCCTGGGAGCTGAGTCCTCTAACAATGAGCTGCTCTTCCTCATCCTTCAGACACAAGAACTGCTCGCCTTTACAAGGTGGTGACTATTCGTATAAGGAACCAGAGAAGGGTATGCATCACTTCCTTGATGAATGGTCTCCAAAAGACACAGAATCGTGGGTTGATTTGAATACCACTCGGCTTTCGATCTCTATTCCTAACTCCTCGCAGCATGAGTTCCGTTCCAACAACAAGCATAACCAAAATCCATGA

Coding sequence (CDS)

ATGAGCGGAGGAAGAAACAGGTTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCTCCCCATCTCCTCTTCACCATTAGCACAACCTCTCTCCACTCTCCTTTCGTTTCCACCCTCTTTCCCCACCAATATGCCCACGTTGGATGGAACTACTTGCAAATGGGTTCCGGGAGGAAAATCGACCCTGAGCCTGGAAGGTGCCGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCCCGGATTCTAAGTACTGTGAGAGACATATGCACCGAGAAGAACGCGGTGGGAACATGAGAGGCTTCTCTGCTTCGAATATGGAAGATTCCTGGGAGCTGAGTCCTCTAACAATGAGCTGCTCTTCCTCATCCTTCAGACACAAGAACTGCTCGCCTTTACAAGGTGGTGACTATTCGTATAAGGAACCAGAGAAGGGTATGCATCACTTCCTTGATGAATGGTCTCCAAAAGACACAGAATCGTGGGTTGATTTGAATACCACTCGGCTTTCGATCTCTATTCCTAACTCCTCGCAGCATGAGTTCCGTTCCAACAACAAGCATAACCAAAATCCATGA

Protein sequence

MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQYAHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSYKEPEKGMHHFLDEWSPKDTESWVDLNTTRLSISIPNSSQHEFRSNNKHNQNP
Homology
[Close]
BLAST of Carg18636 vs. NCBI nr
Match: KAG7021343.1 (Growth-regulating factor 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 448.4 bits (1152), Expect = 3.5e-122
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY 60
           MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY
Sbjct: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY 60

Query: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRGF 120
           AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRGF
Sbjct: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRGF 120

Query: 121 SASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSYKEPEKGMHHFLDEWSPKDTESW 180
           SASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSYKEPEKGMHHFLDEWSPKDTESW
Sbjct: 121 SASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSYKEPEKGMHHFLDEWSPKDTESW 180

Query: 181 VDLNTTRLSISIPNSSQHEFRSNNKHNQNP 211
           VDLNTTRLSISIPNSSQHEFRSNNKHNQNP
Sbjct: 181 VDLNTTRLSISIPNSSQHEFRSNNKHNQNP 210

[Close]
BLAST of Carg18636 vs. NCBI nr
Match: KAG6586484.1 (Growth-regulating factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 408.7 bits (1049), Expect = 3.1e-110
Identity = 209/296 (70.61%), Postives = 209/296 (70.61%), Query Frame = 0 

Query: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY 60
           MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY
Sbjct: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY 60

Query: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR---------- 120
           AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR          
Sbjct: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 VLKTTTHSPPISSITHNSTLPSETHSQHLHPFLYQHGSSSAPQNSITSLLLDPHYRRNRY 180

Query: 181 ----------------EERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGG 211
                           EERGGNMRGFSASNMEDSWELSPL MSCSSSSFRHKNCSPLQGG
Sbjct: 181 GYGVKEDVVDEHRFLSEERGGNMRGFSASNMEDSWELSPLRMSCSSSSFRHKNCSPLQGG 240

[Close]
BLAST of Carg18636 vs. NCBI nr
Match: XP_023537381.1 (growth-regulating factor 1-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105
Identity = 200/293 (68.26%), Postives = 204/293 (69.62%), Query Frame = 0 

Query: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY 60
           MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI+TTS HSPF+STLFPHQY
Sbjct: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY 60

Query: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR---------- 120
           AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR          
Sbjct: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 VLKTTTHSPAISSITHNSTLPSETHPQHLHPFLYQHGCSSTPQNSITSLLLDPDYRYGYG 180

Query: 181 -------------EERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYS 211
                        EER GN+RGFSASNMEDSW+LSPLTMSCSSSSFRHKNCSPLQG DYS
Sbjct: 181 VKEDVVDEHPLQSEERCGNIRGFSASNMEDSWQLSPLTMSCSSSSFRHKNCSPLQGSDYS 240

[Close]
BLAST of Carg18636 vs. NCBI nr
Match: XP_023537380.1 (growth-regulating factor 5-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.1 bits (1006), Expect = 3.0e-105
Identity = 200/295 (67.80%), Postives = 204/295 (69.15%), Query Frame = 0 

Query: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY 60
           MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI+TTS HSPF+STLFPHQY
Sbjct: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY 60

Query: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR---------- 120
           AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR          
Sbjct: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 VLKTTTHSPAISSITHNSTLPSETHPQHLHPFLYQHGCSSTPQNSITSLLLDPDYRNRYG 180

Query: 181 ---------------EERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGD 211
                          EER GN+RGFSASNMEDSW+LSPLTMSCSSSSFRHKNCSPLQG D
Sbjct: 181 YGVKEDVVDEHPLQSEERCGNIRGFSASNMEDSWQLSPLTMSCSSSSFRHKNCSPLQGSD 240

[Close]
BLAST of Carg18636 vs. NCBI nr
Match: XP_023537378.1 (growth-regulating factor 5-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537379.1 growth-regulating factor 5-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.7 bits (1005), Expect = 3.9e-105
Identity = 200/296 (67.57%), Postives = 204/296 (68.92%), Query Frame = 0 

Query: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY 60
           MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI+TTS HSPF+STLFPHQY
Sbjct: 1   MSGGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY 60

Query: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR---------- 120
           AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR          
Sbjct: 61  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 VLKTTTHSPAISSITHNSTLPSETHPQHLHPFLYQHGCSSTPQNSITSLLLDPDYRRNRY 180

Query: 181 ----------------EERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGG 211
                           EER GN+RGFSASNMEDSW+LSPLTMSCSSSSFRHKNCSPLQG 
Sbjct: 181 GYGVKEDVVDEHPLQSEERCGNIRGFSASNMEDSWQLSPLTMSCSSSSFRHKNCSPLQGS 240

[Close]
BLAST of Carg18636 vs. ExPASy Swiss-Prot
Match: Q8L8A6 (Growth-regulating factor 5 OS=Arabidopsis thaliana OX=3702 GN=GRF5 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.2e-37
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0 

Query: 2   SGGR--NRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQ 61
           S GR   R PFT  QW+ELEHQALI+KYM SG+P+PP L+F+I   SL +  VS L PHQ
Sbjct: 7   SSGRTIGRPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSI-RRSLDTSLVSRLLPHQ 66

Query: 62  YAHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRG 121
              +GW   QMG GRK DPEPGRCRRTDGKKWRCS+EA+PDSKYCE+HMHR    G  R 
Sbjct: 67  --SLGWGCYQMGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHR----GRNRA 126

Query: 122 FSASNMEDSWELSPLTMSCSSSSFRHKNCSP 151
             + + ++    +PLT S S S   + N SP
Sbjct: 127 RKSLD-QNQTTTTPLT-SPSLSFTNNNNPSP 148

[Close]
BLAST of Carg18636 vs. ExPASy Swiss-Prot
Match: Q9ZQ12 (Growth-regulating factor 6 OS=Arabidopsis thaliana OX=3702 GN=GRF6 PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 4.0e-36
Identity = 82/183 (44.81%), Postives = 107/183 (58.47%), Query Frame = 0 

Query: 7   RFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI------STTSLHSPFVSTLFPHQY 66
           R PFT +QW+ELE+QAL+FKY+A+ +P+PPHLLF I      S++S  S   S   P   
Sbjct: 4   RIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLS 63

Query: 67  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREER------- 126
            H GWN  +MG GRKID EPGRCRRTDGKKWRCSKEA+PDSKYCERHMHR +        
Sbjct: 64  PHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKP 123

Query: 127 -----------GGNMRGFSASNMEDSWELSP--LTMSCSSSSFRHKNCSPLQGGDYSYKE 164
                        + R   +  M+D + + P     SCS S+    +    +G +   K+
Sbjct: 124 PPTQFTPNLFLDSSSRRRRSGYMDDFFSIEPSGSIKSCSGSAMEDNDDGSCRGINNEEKQ 183

[Close]
BLAST of Carg18636 vs. ExPASy Swiss-Prot
Match: A2XA73 (Growth-regulating factor 1 OS=Oryza sativa subsp. indica OX=39946 GN=GRF1 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-33
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 0 

Query: 4   GRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVST----LFPHQ 63
           G  R+PFTA+QWQELEHQALI+KYMASG P+P  L+  +  + L    ++T     FP Q
Sbjct: 13  GGGRYPFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQ 72

Query: 64  YAHVGWNYLQMGSGRKI-DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR 111
              +GW    MG GRK  DPEPGRCRRTDGKKWRCSKEA+PDSKYCE+HMHR
Sbjct: 73  -PSLGWGCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHR 123

[Close]
BLAST of Carg18636 vs. ExPASy Swiss-Prot
Match: Q6AWY8 (Growth-regulating factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF1 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-33
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 0 

Query: 4   GRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVST----LFPHQ 63
           G  R+PFTA+QWQELEHQALI+KYMASG P+P  L+  +  + L    ++T     FP Q
Sbjct: 13  GGGRYPFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQ 72

Query: 64  YAHVGWNYLQMGSGRKI-DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR 111
              +GW    MG GRK  DPEPGRCRRTDGKKWRCSKEA+PDSKYCE+HMHR
Sbjct: 73  -PSLGWGCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHR 123

[Close]
BLAST of Carg18636 vs. ExPASy Swiss-Prot
Match: Q6AWY7 (Growth-regulating factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF2 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-28
Identity = 64/118 (54.24%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 3   GGRNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFV------STLF 62
           GG  R  FTA QWQELEHQALI+KYMA+G P+PP LL  +   +  +         S  F
Sbjct: 5   GGSGRCLFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLRHRAAAAAAADVDTVPSLAF 64

Query: 63  PHQYAHVGWNYLQMGS---GRKI-DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR 111
           P    H+GW      +   GR++ DPEPGRCRRTDGKKWRCS+EA+ +SKYCE+HMHR
Sbjct: 65  PPH--HLGWGCYGAAAAQYGRRVEDPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHR 120

[Close]
BLAST of Carg18636 vs. ExPASy TrEMBL
Match: A0A1S4E0X8 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.6e-70
Identity = 154/313 (49.20%), Postives = 178/313 (56.87%), Query Frame = 0 

Query: 5   RNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY---A 64
           RNRFPFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TSL +PF+S LFPHQY   +
Sbjct: 4   RNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVS 63

Query: 65  HVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMH------------ 124
            VGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEA+PDSKYCERHMH            
Sbjct: 64  AVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQ 123

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 124 VSKTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQSPSAASSYPSLLPDYRYVYGEKEE 183

Query: 185 ----REERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSY------- 210
               RE+  GN+RGF+ S+M+DSW+L+PLTMSCSSSS R+KNCS LQG   SY       
Sbjct: 184 DFFVREQHSGNVRGFTGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQSFG 243

[Close]
BLAST of Carg18636 vs. ExPASy TrEMBL
Match: A0A1S3CAW1 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.4e-70
Identity = 154/314 (49.04%), Postives = 177/314 (56.37%), Query Frame = 0 

Query: 5   RNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQYAH-V 64
           RNRFPFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TSL +PF+S LFPHQY   V
Sbjct: 4   RNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQAV 63

Query: 65  GWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMH-------------- 124
           GWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEA+PDSKYCERHMH              
Sbjct: 64  GWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQVS 123

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 124 KTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQSPSAASSYPSLLPDYRRNRYVYGEKE 183

Query: 185 -----REERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSY------ 210
                RE+  GN+RGF+ S+M+DSW+L+PLTMSCSSSS R+KNCS LQG   SY      
Sbjct: 184 EDFFVREQHSGNVRGFTGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQSF 243

[Close]
BLAST of Carg18636 vs. ExPASy TrEMBL
Match: A0A1S4E0W5 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.4e-70
Identity = 154/315 (48.89%), Postives = 178/315 (56.51%), Query Frame = 0 

Query: 5   RNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY---A 64
           RNRFPFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TSL +PF+S LFPHQY   +
Sbjct: 4   RNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVS 63

Query: 65  HVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMH------------ 124
            VGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEA+PDSKYCERHMH            
Sbjct: 64  AVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQ 123

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 124 VSKTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQSPSAASSYPSLLPDYRNRYVYGEK 183

Query: 185 ------REERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSY----- 210
                 RE+  GN+RGF+ S+M+DSW+L+PLTMSCSSSS R+KNCS LQG   SY     
Sbjct: 184 EEDFFVREQHSGNVRGFTGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQS 243

[Close]
BLAST of Carg18636 vs. ExPASy TrEMBL
Match: A0A5A7V1P5 (Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001220 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.7e-70
Identity = 154/316 (48.73%), Postives = 178/316 (56.33%), Query Frame = 0 

Query: 5   RNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY---A 64
           RNRFPFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TSL +PF+S LFPHQY   +
Sbjct: 4   RNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVS 63

Query: 65  HVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMH------------ 124
            VGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEA+PDSKYCERHMH            
Sbjct: 64  AVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQ 123

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 124 VSKTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQSPSAASSHPSLLPDYRRNRYVYGE 183

Query: 185 -------REERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSY---- 210
                  RE+  GN+RGF+ S+M+DSW+L+PLTMSCSSSS R+KNCS LQG   SY    
Sbjct: 184 KEEDFFVREQHSGNVRGFTGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQ 243

[Close]
BLAST of Carg18636 vs. ExPASy TrEMBL
Match: A0A1S4E0W0 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.7e-70
Identity = 154/316 (48.73%), Postives = 178/316 (56.33%), Query Frame = 0 

Query: 5   RNRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQY---A 64
           RNRFPFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TSL +PF+S LFPHQY   +
Sbjct: 4   RNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVS 63

Query: 65  HVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMH------------ 124
            VGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEA+PDSKYCERHMH            
Sbjct: 64  AVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQ 123

Query: 125 ------------------------------------------------------------ 184
                                                                       
Sbjct: 124 VSKTTPLNSSNPSTPAISSITHNSETHPHPHPFHYQSPSAASSYPSLLPDYRRNRYVYGE 183

Query: 185 -------REERGGNMRGFSASNMEDSWELSPLTMSCSSSSFRHKNCSPLQGGDYSY---- 210
                  RE+  GN+RGF+ S+M+DSW+L+PLTMSCSSSS R+KNCS LQG   SY    
Sbjct: 184 KEEDFFVREQHSGNVRGFTGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQ 243

[Close]
BLAST of Carg18636 vs. TAIR 10
Match: AT3G13960.1 (growth-regulating factor 5 )

HSP 1 Score: 155.6 bits (392), Expect = 4.4e-38
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0 

Query: 2   SGGR--NRFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQ 61
           S GR   R PFT  QW+ELEHQALI+KYM SG+P+PP L+F+I   SL +  VS L PHQ
Sbjct: 7   SSGRTIGRPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSI-RRSLDTSLVSRLLPHQ 66

Query: 62  YAHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREERGGNMRG 121
              +GW   QMG GRK DPEPGRCRRTDGKKWRCS+EA+PDSKYCE+HMHR    G  R 
Sbjct: 67  --SLGWGCYQMGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHR----GRNRA 126

Query: 122 FSASNMEDSWELSPLTMSCSSSSFRHKNCSP 151
             + + ++    +PLT S S S   + N SP
Sbjct: 127 RKSLD-QNQTTTTPLT-SPSLSFTNNNNPSP 148

[Close]
BLAST of Carg18636 vs. TAIR 10
Match: AT2G06200.1 (growth-regulating factor 6 )

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-37
Identity = 82/183 (44.81%), Postives = 107/183 (58.47%), Query Frame = 0 

Query: 7   RFPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI------STTSLHSPFVSTLFPHQY 66
           R PFT +QW+ELE+QAL+FKY+A+ +P+PPHLLF I      S++S  S   S   P   
Sbjct: 4   RIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLS 63

Query: 67  AHVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHREER------- 126
            H GWN  +MG GRKID EPGRCRRTDGKKWRCSKEA+PDSKYCERHMHR +        
Sbjct: 64  PHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKP 123

Query: 127 -----------GGNMRGFSASNMEDSWELSP--LTMSCSSSSFRHKNCSPLQGGDYSYKE 164
                        + R   +  M+D + + P     SCS S+    +    +G +   K+
Sbjct: 124 PPTQFTPNLFLDSSSRRRRSGYMDDFFSIEPSGSIKSCSGSAMEDNDDGSCRGINNEEKQ 183

[Close]
BLAST of Carg18636 vs. TAIR 10
Match: AT2G22840.1 (growth-regulating factor 1 )

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-25
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 0 

Query: 9   PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQYAHVGWNYL 68
           PF+  QW ELE QALI+KY+ + +P+P  LL ++  +    P+  +L P+ +   GW   
Sbjct: 133 PFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFF--PY-GSLPPNSF---GWGSF 192

Query: 69  QMG-SGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR 111
            +G SG  +DPEPGRCRRTDGKKWRCS++A PD KYCERH++R
Sbjct: 193 HLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINR 229

[Close]
BLAST of Carg18636 vs. TAIR 10
Match: AT4G37740.1 (growth-regulating factor 2 )

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-25
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 0 

Query: 9   PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLHSPFVSTLFPHQYAHVGWNYL 68
           PFT  QW ELE QALI+KY+ + +P+P  LL +I  +    P+  +L P  +   GW   
Sbjct: 164 PFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKS--FYPY-GSLPPSSF---GWGTF 223

Query: 69  QMG-SGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR 111
            +G +G  +DPEPGRCRRTDGKKWRCS++A PD KYCERH++R
Sbjct: 224 HLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINR 260

[Close]
BLAST of Carg18636 vs. TAIR 10
Match: AT2G36400.1 (growth-regulating factor 3 )

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23
Identity = 59/112 (52.68%), Postives = 70/112 (62.50%), Query Frame = 0 

Query: 6   NRFP-----FTAAQWQELEHQALIFKYMASGIPLPPHLLFTISTTSLH-SPFVSTLFPHQ 65
           +RFP     F+ AQWQELE QALI++YM +G  +P  LL  I  + LH SP  S    H 
Sbjct: 68  SRFPKMGSFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSP--SYFLHHP 127

Query: 66  YAHVGWNYLQMGSGR-KIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHR 111
             H+         GR  +DPEPGRCRRTDGKKWRCS++ F   KYCERHMHR
Sbjct: 128 LQHLPHYQPAWYLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHR 177

The following BLAST results are available for this feature:
BLAST of Carg18636 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021343.13.5e-122100.00Growth-regulating factor 5, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6586484.13.1e-11070.61Growth-regulating factor 5, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023537381.11.7e-10568.26growth-regulating factor 1-like isoform X3 [Cucurbita pepo subsp. pepo][more]
XP_023537380.13.0e-10567.80growth-regulating factor 5-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023537378.13.9e-10567.57growth-regulating factor 5-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235... [more]
BLAST of Carg18636 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L8A66.2e-3756.95Growth-regulating factor 5 OS=Arabidopsis thaliana OX=3702 GN=GRF5 PE=1 SV=1[more]
Q9ZQ124.0e-3644.81Growth-regulating factor 6 OS=Arabidopsis thaliana OX=3702 GN=GRF6 PE=1 SV=2[more]
A2XA731.9e-3362.50Growth-regulating factor 1 OS=Oryza sativa subsp. indica OX=39946 GN=GRF1 PE=2 S... [more]
Q6AWY81.9e-3362.50Growth-regulating factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF1 PE=3... [more]
Q6AWY76.8e-2854.24Growth-regulating factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF2 PE=3... [more]
BLAST of Carg18636 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E0X82.6e-7049.20Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1[more]
A0A1S3CAW13.4e-7049.04Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1[more]
A0A1S4E0W54.4e-7048.89Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1[more]
A0A5A7V1P55.7e-7048.73Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S4E0W05.7e-7048.73Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103498777 PE=3 SV=1[more]
BLAST of Carg18636 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13960.14.4e-3856.95growth-regulating factor 5 [more]
AT2G06200.12.8e-3744.81growth-regulating factor 6 [more]
AT2G22840.14.2e-2551.46growth-regulating factor 1 [more]
AT4G37740.14.2e-2552.43growth-regulating factor 2 [more]
AT2G36400.11.8e-2352.68growth-regulating factor 3 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014978Glutamine-Leucine-Glutamine, QLQSMARTSM00951QLQ_2coord: 8..44
e-value: 1.8E-11
score: 54.1
IPR014978Glutamine-Leucine-Glutamine, QLQPFAMPF08880QLQcoord: 9..42
e-value: 4.5E-16
score: 58.3
IPR014978Glutamine-Leucine-Glutamine, QLQPROSITEPS51666QLQcoord: 9..44
score: 22.446363
IPR014977WRC domainPFAMPF08879WRCcoord: 78..111
e-value: 2.5E-18
score: 65.5
IPR014977WRC domainPROSITEPS51667WRCcoord: 77..122
score: 20.951616
IPR031137Growth-regulating factorPANTHERPTHR31602FAMILY NOT NAMEDcoord: 116..198
coord: 6..110
NoneNo IPR availablePANTHERPTHR31602:SF46GROWTH-REGULATING FACTOR 6coord: 116..198
coord: 6..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18636-RACarg18636-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032502 developmental process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding