Carg18632-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18632-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Carg_Chr12: 11901138 .. 11905159 (-)
Sequence length	2247
RNA-Seq Expression	Carg18632-RA
Synteny	Carg18632-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCGATTCCTTCTCAGACCACTCCGAACTCCATTATCACTACCAATTTCACATCGCGAATCATCCCATATCACTCTCCCGCGGTCAAATCCTTCCGACCCACGCTCTTCTGCCCTAATGCTCTCTCCAATTCCAGCAACCGGAAGCCGGCTCGCCGGTACGATGGCCAAACCACGACGAACACTCTCTCCAAATCTCAGAACCGGACGAGCGATTCAGTTCTTAGTCTTCCGTCGACGGTGGATTTAGTGGCTCTATGCGAGGCGGGCGAGGTAATGGACGTTCTGGAATTTATTGGCCAAGGTGCTAATCTTGATTATGGAATTTGTACAGCTTTGTTGAATTCTTGTTGCAATTTTAAGTTGCTTGAGGCTGGGAGAAGGGTGGATAGGCTGTTGAAAGGGACGAAATTTAGTGGGGATGTGGGATTGAACAATAAATTGATTGAAATGTACTCTTGTTGTGGCTGTATGAAAGATGCGCGTAGGGTGTTTGATAAAATGCCTGACAGGGATATTAGGACGTGGAATTTGATGATCAAGGGGTATGGAGAGAATGGGGAAGGAGATGGTGGGTTGGCCTTGTTTGAGCGAATGAAGAGTGTGGGATTGCAGCCAAATTCTGAAACATTTCTAGTGGTGTTAGCAGCTTGTGCCATGGCTGAAGCTGTGGAGGAAGGTTTATTTTACTTTAACTCTATGGAAAATGAATATGGAATCATTCCTGAAATCGAACATTATTTGGGAGTTGTTGATGTTCTTGGGAAATCTGGCCATTTGATTGAAGCAGAAGAGTTCATTAAGAAAATTCCCATCAACCCCACAGCCAAAATCTGGGATGCCCTTAGAATCTACGCTCGACTCCATGGAAACATCGAGCTTGAAGATCGAGCCGAAGAGCTGATATTCTCTTATGACCCGTCCATGGCGCCCACGGTTGCCAAGCCACCGCTCCCTCCCCCAAGGAAGCAATCGGCCACCAACATGTTGGAGGAGAAGGACAGAGTGAGGGAGTTCAGATGTGCAATGCCTTACAAAGAAGAGGGGGAAGGGGGGAAGCTAAAAGGATTGAATGGACAAATGAGAGAAGCAGGGTATGTGCCAGATACAAGATATGTGCTTCATGACATTGATGAGGAGGCTAAACAGCAAGCTTTGCAGTACCATAGCGAGCGGTTGGCCATTGCTTACGGATTGATCAGTACGCCTGCGAGAACGACGCTGAGAATCATCAAGAATCTTCGGATCTGCGGCGATTGTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGTTGATTGTTAGAGATAATAAGCGGTTTCATCACTTCAAAGACGGCAAATGCTCTTGTGGGGATTACTGGTAAATACATCACCTGTATATACACAATCATATTTTGGCTTCCTTGGTAATATTATGACTTTGTTTTTTGTTTTCTTGAAAAGTCTCGTACCAATTCATACTAATGGTAGCGGATGTCGGACTCCTCTTCTAACAATTCCCAATAATTTTATGATAGAAAGCGAAGCCATTCCGTCGAAAAGGTCGAGAGTAGATTGAAAGATGAATATTCATAGTAAACATTAGATTTTGAGGATTCGGGTTCTAATGCAAATCTAAAAATTTTGAATCAAGTTTTAGTTTTTAAAAACTATTGAGTTTTGTATGGAAGGTAATATAATAAAGGTTTTATGGGTAGAAAATGAGAAAATTTAAGAAGAAGGGGTTGGACATGAGAATAATTAAATAATAAAAGTTTTATTAGTCGAAATTATGCAAATAAATATTTAATATTTAATTAGAAATGACAGCACATCCTTAAAATTAAATTTCCTAAAATACCCTTTGGATTAAAAATTTTGTGGGCCGAGGTGAAAAGAAGCAGGCCCAGGGTTGGGTGGAAGAAGTCCTCGCTCCGTAGTCCGTCGTTCCATTGAAATTCTCAAGATCCCAATGCCTCATTCTCTCTTCTTCACGGTGTCGGAGCTCCACTTTCTCCCACTAGCGGCGACAGAAAGGAGGTCAGTTCCTCAATCTCCTCCTCCCTCATCGTCTCTTTTGCTATTTCTTGAAGCTGAACGCCTTTCACATTCTCTTCTATTTCCTCAATCTCCTCCCCCTCTGATTTGATCCTTGGTTTTGCCTTTTCCTGTATCCTGTGTTTTTCTCTTTCTTTTATATGATCTTTTCATCTTCTCTGTCGTATAAATACTGCGCCTTATTTGTATAATAGTGGAAATCTCTTCTTCTTTTTTTTTCTATGTCTTTGGATTGTTGTTTCGGATATTCGATATTGGAATTTGATTAGGGTTTTAGCCGTTTGTTATTTTGAAAATTTACTACACTAAAACTTTCTATTTCCTAAGTAAGGAGGGAAAATGTCTGTGATTTAGGGTGCTATTTATGGCGGAATGGTTTCTCTGGATCTTATTTTCCGACTCATGTGACGGTAGTAAATTTCGAGTTACTCCATTTTGCCTGCTCCACGTTGATTTTTGTGCTTAACGAAGAAACATATTTTGTCACACGGCAGTGGTTTTCTAGATCTCTTTTCACTTCTGATTTTGTCTGAGAAGCCATTTTTTTGGGTATTTATTCATTGTTAGGAACGTCAGGAAAATCGATGTTTTGTAGAGGTTGATAAATATGTTCTTGTTTTCGACATGTCTTTAATTTAATTTTTTATCTCTTGGCTGCAGTTTTCTAGCTTTCTTTTGGATTTAATGGCGTCCAAGTTGCATCAGTTGCAATCCAAGGCTTGTAAAGCTTCTCAATATGCTATCAAGCACGGGTCCTCCTATTATAAGCAGTTGTTGGAGCAGAACAAGCAATACATCCAAGAACCAGCTACTGTGGAGAAATGCAGCTTGCTTTCAGAGCAGTTGTTTTATACTCGTCTTGCTAGGTAATTACCTTCAATACTCATGCTATTCTTGCACCTTTTCCTTGGTTGTTGAAGAATTCCTACCGTTTTCATGTTCATGTGTTCTTGGGATTATACCTATTAGCTTAGTTTTAGTATCTTACGCTGGCATTCAACTGATACAATTGTGTTTTAGAAACTCGTCTGTTTCTATATTGATTTTAACTTTGCTTCTAAGCATCGCACCACTTGTTGAACTGCGCAGCCACTCGTGAGAATTATAGTTCATGGACCTGTTTCCATTCATGGAACGGTATACATATTTGTTATACGTGGGAATGAATCCCCTCTCACCTGTAGCACTGTGCTTAGTATGATAGCATTTTTTTATTCCTAAAATGGGAGCATGAAAGTATCTACTATCCATCCGTGCATGAATTCTGTATTATCCCCCACTCGATGTTCATATCCTAAAATACTTGTCCTAAGCTTCACCTCATTGCTTTACTCACTGATTTTGCACATTACGTTTATAATGCAGCATCCCAGGCCGATATGAATCATTCTGGAAAGAACTTGATTGTGTTAAAAACTTGTGGAAGAACCGGCAGGAGCTGAAAGTTGAAGATGCTGGCATCGCGGCCTTGTTCGGGCTTGAGTGTTTTGCATGGTTTTGTGCTGGCGAGATCGTTGGAAGGGGCTTTACATTCACAGGTTATTATGTCTGAGGACATTCATAGTCATTTGTGGAAGGGATGTCGACAATGGCGAATTCCCTTCTCTTTTCTGCGGGTACTTCGCATATAGTTTTTTTCTTTTTCTTTTTAATTAAGTTGAGAATTCTGCGAGCAACTCTGATAGATTAATAATAGCCCATGAATTCCGAGGGGGACTATAAAGGATTCTTGCGTTGTTCAAATTGATGCATGTTCTTGATAAATCCAGTTACTAACTATGAACTGGAAATCTGATTTGGTGAAACCTCCATACAAGATGTGGCTTTTGCTGCAACTTCCCTACATTTTTCTTGGAGCTTTTTCCCAGATGATGTGCCAGGTTGTACGTAGAACTAGAGGTATGTCATTGTGCAATCTTTGTATTTGGGTGTTCCATTCGAAATCTTCAATATCAAGTTCATCTCTCCC

mRNA sequence

ATGGCTTCCTCGATTCCTTCTCAGACCACTCCGAACTCCATTATCACTACCAATTTCACATCGCGAATCATCCCATATCACTCTCCCGCGGTCAAATCCTTCCGACCCACGCTCTTCTGCCCTAATGCTCTCTCCAATTCCAGCAACCGGAAGCCGGCTCGCCGGTACGATGGCCAAACCACGACGAACACTCTCTCCAAATCTCAGAACCGGACGAGCGATTCAGTTCTTAGTCTTCCGTCGACGGTGGATTTAGTGGCTCTATGCGAGGCGGGCGAGGTAATGGACGTTCTGGAATTTATTGGCCAAGGTGCTAATCTTGATTATGGAATTTGTACAGCTTTGTTGAATTCTTGTTGCAATTTTAAGTTGCTTGAGGCTGGGAGAAGGGTGGATAGGCTGTTGAAAGGGACGAAATTTAGTGGGGATGTGGGATTGAACAATAAATTGATTGAAATGTACTCTTGTTGTGGCTGTATGAAAGATGCGCGTAGGGTGTTTGATAAAATGCCTGACAGGGATATTAGGACGTGGAATTTGATGATCAAGGGGTATGGAGAGAATGGGGAAGGAGATGGTGGGTTGGCCTTGTTTGAGCGAATGAAGAGTGTGGGATTGCAGCCAAATTCTGAAACATTTCTAGTGGTGTTAGCAGCTTGTGCCATGGCTGAAGCTGTGGAGGAAGGTTTATTTTACTTTAACTCTATGGAAAATGAATATGGAATCATTCCTGAAATCGAACATTATTTGGGAGTTGTTGATGTTCTTGGGAAATCTGGCCATTTGATTGAAGCAGAAGAGTTCATTAAGAAAATTCCCATCAACCCCACAGCCAAAATCTGGGATGCCCTTAGAATCTACGCTCGACTCCATGGAAACATCGAGCTTGAAGATCGAGCCGAAGAGCTGATATTCTCTTATGACCCGTCCATGGCGCCCACGGTTGCCAAGCCACCGCTCCCTCCCCCAAGGAAGCAATCGGCCACCAACATGTTGGAGGAGAAGGACAGAGTGAGGGAGTTCAGATGTGCAATGCCTTACAAAGAAGAGGGGGAAGGGGGGAAGCTAAAAGGATTGAATGGACAAATGAGAGAAGCAGGGTATGTGCCAGATACAAGATATGTGCTTCATGACATTGATGAGGAGGCTAAACAGCAAGCTTTGCAGTACCATAGCGAGCGGTTGGCCATTGCTTACGGATTGATCAGTACGCCTGCGAGAACGACGCTGAGAATCATCAAGAATCTTCGGATCTGCGGCGATTGTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGTTGATTGTTAGAGATAATAAGCGGTTTCATCACTTCAAAGACGGCAAATGCTCTTATCCCAATGCCTCATTCTCTCTTCTTCACGGTGTCGGAGCTCCACTTTCTCCCACTAGCGGCGACAGAAAGGAGTTTTCTAGCTTTCTTTTGGATTTAATGGCGTCCAAGTTGCATCAGTTGCAATCCAAGGCTTGTAAAGCTTCTCAATATGCTATCAAGCACGGGTCCTCCTATTATAAGCAGTTGTTGGAGCAGAACAAGCAATACATCCAAGAACCAGCTACTGTGGAGAAATGCAGCTTGCTTTCAGAGCAGTTGTTTTATACTCGTCTTGCTAGCATCCCAGGCCGATATGAATCATTCTGGAAAGAACTTGATTGTGTTAAAAACTTGTGGAAGAACCGGCAGGAGCTGAAAGTTGAAGATGCTGGCATCGCGGCCTTGTTCGGGCTTGAGTGTTTTGCATGGTTTTGTGCTGGCGAGATCGTTGGAAGGGGCTTTACATTCACAGGTTATTATGTCTGAGGACATTCATAGTCATTTGTGGAAGGGATGTCGACAATGGCGAATTCCCTTCTCTTTTCTGCGGGTACTTCGCATATAGTTTTTTTCTTTTTCTTTTTAATTAAGTTGAGAATTCTGCGAGCAACTCTGATAGATTAATAATAGCCCATGAATTCCGAGGGGGACTATAAAGGATTCTTGCGTTGTTCAAATTGATGCATGTTCTTGATAAATCCAGTTACTAACTATGAACTGGAAATCTGATTTGGTGAAACCTCCATACAAGATGTGGCTTTTGCTGCAACTTCCCTACATTTTTCTTGGAGCTTTTTCCCAGATGATGTGCCAGGTTGTACGTAGAACTAGAGGTATGTCATTGTGCAATCTTTGTATTTGGGTGTTCCATTCGAAATCTTCAATATCAAGTTCATCTCTCCC

Coding sequence (CDS)

ATGGCTTCCTCGATTCCTTCTCAGACCACTCCGAACTCCATTATCACTACCAATTTCACATCGCGAATCATCCCATATCACTCTCCCGCGGTCAAATCCTTCCGACCCACGCTCTTCTGCCCTAATGCTCTCTCCAATTCCAGCAACCGGAAGCCGGCTCGCCGGTACGATGGCCAAACCACGACGAACACTCTCTCCAAATCTCAGAACCGGACGAGCGATTCAGTTCTTAGTCTTCCGTCGACGGTGGATTTAGTGGCTCTATGCGAGGCGGGCGAGGTAATGGACGTTCTGGAATTTATTGGCCAAGGTGCTAATCTTGATTATGGAATTTGTACAGCTTTGTTGAATTCTTGTTGCAATTTTAAGTTGCTTGAGGCTGGGAGAAGGGTGGATAGGCTGTTGAAAGGGACGAAATTTAGTGGGGATGTGGGATTGAACAATAAATTGATTGAAATGTACTCTTGTTGTGGCTGTATGAAAGATGCGCGTAGGGTGTTTGATAAAATGCCTGACAGGGATATTAGGACGTGGAATTTGATGATCAAGGGGTATGGAGAGAATGGGGAAGGAGATGGTGGGTTGGCCTTGTTTGAGCGAATGAAGAGTGTGGGATTGCAGCCAAATTCTGAAACATTTCTAGTGGTGTTAGCAGCTTGTGCCATGGCTGAAGCTGTGGAGGAAGGTTTATTTTACTTTAACTCTATGGAAAATGAATATGGAATCATTCCTGAAATCGAACATTATTTGGGAGTTGTTGATGTTCTTGGGAAATCTGGCCATTTGATTGAAGCAGAAGAGTTCATTAAGAAAATTCCCATCAACCCCACAGCCAAAATCTGGGATGCCCTTAGAATCTACGCTCGACTCCATGGAAACATCGAGCTTGAAGATCGAGCCGAAGAGCTGATATTCTCTTATGACCCGTCCATGGCGCCCACGGTTGCCAAGCCACCGCTCCCTCCCCCAAGGAAGCAATCGGCCACCAACATGTTGGAGGAGAAGGACAGAGTGAGGGAGTTCAGATGTGCAATGCCTTACAAAGAAGAGGGGGAAGGGGGGAAGCTAAAAGGATTGAATGGACAAATGAGAGAAGCAGGGTATGTGCCAGATACAAGATATGTGCTTCATGACATTGATGAGGAGGCTAAACAGCAAGCTTTGCAGTACCATAGCGAGCGGTTGGCCATTGCTTACGGATTGATCAGTACGCCTGCGAGAACGACGCTGAGAATCATCAAGAATCTTCGGATCTGCGGCGATTGTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGTTGATTGTTAGAGATAATAAGCGGTTTCATCACTTCAAAGACGGCAAATGCTCTTATCCCAATGCCTCATTCTCTCTTCTTCACGGTGTCGGAGCTCCACTTTCTCCCACTAGCGGCGACAGAAAGGAGTTTTCTAGCTTTCTTTTGGATTTAATGGCGTCCAAGTTGCATCAGTTGCAATCCAAGGCTTGTAAAGCTTCTCAATATGCTATCAAGCACGGGTCCTCCTATTATAAGCAGTTGTTGGAGCAGAACAAGCAATACATCCAAGAACCAGCTACTGTGGAGAAATGCAGCTTGCTTTCAGAGCAGTTGTTTTATACTCGTCTTGCTAGCATCCCAGGCCGATATGAATCATTCTGGAAAGAACTTGATTGTGTTAAAAACTTGTGGAAGAACCGGCAGGAGCTGAAAGTTGAAGATGCTGGCATCGCGGCCTTGTTCGGGCTTGAGTGTTTTGCATGGTTTTGTGCTGGCGAGATCGTTGGAAGGGGCTTTACATTCACAGGTTATTATGTCTGA

Protein sequence

MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQTTTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSYPNASFSLLHGVGAPLSPTSGDRKEFSSFLLDLMASKLHQLQSKACKASQYAIKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSEQLFYTRLASIPGRYESFWKELDCVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV

Homology

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: KAG7021339.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1229.9 bits (3181), Expect = 0.0e+00
Identity = 609/609 (100.00%), Postives = 609/609 (100.00%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSYPNASFSLLHGVGAPLSPTSGDRKEF 480
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSYPNASFSLLHGVGAPLSPTSGDRKEF
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSYPNASFSLLHGVGAPLSPTSGDRKEF 480

Query: 481 SSFLLDLMASKLHQLQSKACKASQYAIKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSEQ 540
           SSFLLDLMASKLHQLQSKACKASQYAIKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSEQ
Sbjct: 481 SSFLLDLMASKLHQLQSKACKASQYAIKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSEQ 540

Query: 541 LFYTRLASIPGRYESFWKELDCVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGR 600
           LFYTRLASIPGRYESFWKELDCVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGR
Sbjct: 541 LFYTRLASIPGRYESFWKELDCVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGR 600

Query: 601 GFTFTGYYV 610
           GFTFTGYYV
Sbjct: 601 GFTFTGYYV 609

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: KAG6586480.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1221.8 bits (3160), Expect = 0.0e+00
Identity = 606/609 (99.51%), Postives = 607/609 (99.67%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSC 
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCR 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNN LIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNNLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSYPNASFSLLHGVGAPLSPTSGDRKEF 480
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSYPNASFSLLHGVGAPLSPTSGDRKEF
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSYPNASFSLLHGVGAPLSPTSGDRKEF 480

Query: 481 SSFLLDLMASKLHQLQSKACKASQYAIKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSEQ 540
           SSFLLDLMASKLHQLQSKACKASQYAIKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSEQ
Sbjct: 481 SSFLLDLMASKLHQLQSKACKASQYAIKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSEQ 540

Query: 541 LFYTRLASIPGRYESFWKELDCVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGR 600
           LFYTRLASIPGRYESFWKELDCVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGR
Sbjct: 541 LFYTRLASIPGRYESFWKELDCVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGR 600

Query: 601 GFTFTGYYV 610
           GFTFTGYYV
Sbjct: 601 GFTFTGYYV 609

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: XP_022938077.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isoform X2 [Cucurbita moschata] >XP_022938078.1 pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 905.6 bits (2339), Expect = 2.3e-259
Identity = 449/454 (98.90%), Postives = 451/454 (99.34%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPN+LSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNSLSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNN LIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNNLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPT AKPPL PPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTAAKPPLLPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 454

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: XP_022938076.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 905.6 bits (2339), Expect = 2.3e-259
Identity = 449/454 (98.90%), Postives = 451/454 (99.34%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPN+LSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNSLSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNN LIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNNLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPT AKPPL PPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTAAKPPLLPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 454

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: XP_023538219.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 898.7 bits (2321), Expect = 2.8e-257
Identity = 446/454 (98.24%), Postives = 449/454 (98.90%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQT PNSIITTNFTSRIIP+HSPAVKSFRP LFCPNALSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTAPNSIITTNFTSRIIPFHSPAVKSFRPKLFCPNALSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGA+LDYGI TALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGAHLDYGIFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMK+VGLQPNSETFL VLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKNVGLQPNSETFLAVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKD KCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDSKCS 454

[Close]

BLAST of Carg18632-RA vs. ExPASy Swiss-Prot
Match: Q9ZQE5 (Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2)

HSP 1 Score: 403.3 bits (1035), Expect = 4.9e-111
Identity = 209/410 (50.98%), Postives = 268/410 (65.37%), Query Frame = 0


Query: 45  SNSSNRKPARRYDGQTTTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQG 104
           SN S     ++        + ++S N+ ++ V   PS  +++ LC+     D +E + +G
Sbjct: 173 SNQSQYYTPQQQQQPQPPRSSNQSPNQMNE-VAPPPSVEEVMRLCQRRLYKDAIELLDKG 232

Query: 105 ANLDYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDAR 164
           A  D      L  SC N K LE  ++V      +KF GD  LNN +I M+  C  + DA+
Sbjct: 233 AMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAK 292

Query: 165 RVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAE 224
           RVFD M D+D+ +W+LM+  Y +NG GD  L LFE M   GL+PN ETFL V  ACA   
Sbjct: 293 RVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVG 352

Query: 225 AVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDAL 284
            +EE   +F+SM+NE+GI P+ EHYLGV+ VLGK GHL+EAE++I+ +P  PTA  W+A+
Sbjct: 353 GIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADFWEAM 412

Query: 285 RIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCA 344
           R YARLHG+I+LED  EEL+   DPS A  + K P PPP+    TNM+  K R+ EFR  
Sbjct: 413 RNYARLHGDIDLEDYMEELMVDVDPSKA-VINKIPTPPPKSFKETNMVTSKSRILEFRNL 472

Query: 345 MPYKEEGEGGKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLIST 404
             YK+E +    K      +   YVPDTR+VLHDID+EAK+QAL YHSERLAIAYG+I T
Sbjct: 473 TFYKDEAKEMAAK------KGVVYVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICT 532

Query: 405 PARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           P R TL IIKNLR+CGDCHN IKIMSKI+GR LIVRDNKRFHHFKDGKCS
Sbjct: 533 PPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCS 574

[Close]

BLAST of Carg18632-RA vs. ExPASy Swiss-Prot
Match: Q9SUU7 (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-68
Identity = 141/386 (36.53%), Postives = 220/386 (56.99%), Query Frame = 0


Query: 84  DLVALCEAGEVMDVLEFIGQGANLDYGICTALL----NSCCNFKLLEAGRRVDRLLKGTK 143
           +L ++C  G+V   +E I    N  Y +    L      C + + L+  + V   +  + 
Sbjct: 152 ELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSV 211

Query: 144 FSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFE 203
              D+   N +IEMYS CG ++DA  VF+ MP+R++ TW  +I+ + +NG+G+  +  F 
Sbjct: 212 GISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFS 271

Query: 204 RMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKS 263
           R K  G +P+ E F  +  AC +   + EGL +F SM  EYGIIP +EHY+ +V +L + 
Sbjct: 272 RFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEP 331

Query: 264 GHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPP 323
           G+L EA  F++   + P   +W+ L   +R+HG++ L DR ++++   D S     +K  
Sbjct: 332 GYLDEALRFVES--MEPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAG 391

Query: 324 LPPPRKQSATNMLEEK--DRVREFRCAMPYKEEGEGGK---------LKGLNGQMREAGY 383
           L P +   ++++++EK     +     + Y   G+  +         LK L   M E GY
Sbjct: 392 LVPVK---SSDLVKEKLQRMAKGPNYGIRYMAAGDISRPENRELYMALKSLKEHMIEIGY 451

Query: 384 VPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKI 443
           VP ++  LHD+D+E+K + L  H+ER A     + TPAR+ +R++KNLR+C DCHNA+K+
Sbjct: 452 VPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKL 511

Query: 444 MSKIVGRELIVRDNKRFHHFKDGKCS 455
           MSKIVGRELI RD KRFHH KDG CS
Sbjct: 512 MSKIVGRELISRDAKRFHHMKDGVCS 532

[Close]

BLAST of Carg18632-RA vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.3e-68
Identity = 139/375 (37.07%), Postives = 219/375 (58.40%), Query Frame = 0


Query: 103 QGANLDYGICTALLNSCCNFKLLEAGRRV-DRLLKGTKFSGDVGLNNKLIEMYSCCGCMK 162
           +G  L+    ++ L++C +   LE G+++  RL+KG   +G   + N L+ MY  CG ++
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIE 462

Query: 163 DARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACA 222
           +A  +F +M  +DI +WN MI GY  +G G+  L  FE MK  GL+P+  T + VL+AC+
Sbjct: 463 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 522

Query: 223 MAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIW 282
               V++G  YF +M  +YG++P  +HY  +VD+LG++G L +A   +K +P  P A IW
Sbjct: 523 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIW 582

Query: 283 DALRIYARLHGNIELEDRAEELIFSYDP--------------------SMAPTVAKPPLP 342
             L   +R+HGN EL + A + IF+ +P                     +     +    
Sbjct: 583 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 642

Query: 343 PPRKQSATNMLEEKDRVREFRCAMPYKEEGEG--GKLKGLNGQMREAGYVPDTRYVLHDI 402
             +K    + +E +++   F     +  E +     L+ L+ +M++AGYV  T  VLHD+
Sbjct: 643 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDV 702

Query: 403 DEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIV 455
           +EE K++ ++YHSERLA+AYG++   +   +R+IKNLR+C DCHNAIK M++I GR +I+
Sbjct: 703 EEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIIL 762

[Close]

BLAST of Carg18632-RA vs. ExPASy Swiss-Prot
Match: Q9LTF4 (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.3e-68
Identity = 144/369 (39.02%), Postives = 215/369 (58.27%), Query Frame = 0


Query: 108 DYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVF 167
           DY   +++++ C N  LLE GR++  L   + F     + + L+ +YS CG  + A +VF
Sbjct: 217 DYSF-SSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVF 276

Query: 168 DKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVE 227
           +++P +++  WN M+K Y ++      + LF+RMK  G++PN  TFL VL AC+ A  V+
Sbjct: 277 NEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVD 336

Query: 228 EGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIY 287
           EG +YF+ M+ E  I P  +HY  +VD+LG++G L EA E I  +PI+PT  +W AL   
Sbjct: 337 EGRYYFDQMK-ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTS 396

Query: 288 ARLHGNIELEDRAEELIFSYDP-------SMAPTVAKPPL-------------PPPRKQS 347
             +H N EL   A + +F   P       S++   A                    +K++
Sbjct: 397 CTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKET 456

Query: 348 ATNMLEEKDRVREFRCAMPYKEEGEG--GKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQ 407
             + +EE+++V  F       E+ +    KL  L  +M +AGY+ DT YVL ++D + K 
Sbjct: 457 GLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKN 516

Query: 408 QALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRF 455
           Q ++YHSERLAIA+GLI+ PA   +R++KNLR+CGDCHNAIK MS    R +IVRDN RF
Sbjct: 517 QTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRF 576

[Close]

BLAST of Carg18632-RA vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.0e-68
Identity = 145/366 (39.62%), Postives = 203/366 (55.46%), Query Frame = 0


Query: 113 TALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPD 172
           T +L++C     L  G+ V  L++ T F   + ++  LI MY+ CG + +ARR+FD M  
Sbjct: 424 TCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTK 483

Query: 173 RDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFY 232
           ++  TWN MI GYG +G+G   L +F  M + G+ P   TFL VL AC+ A  V+EG   
Sbjct: 484 KNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEI 543

Query: 233 FNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHG 292
           FNSM + YG  P ++HY  +VD+LG++GHL  A +FI+ + I P + +W+ L    R+H 
Sbjct: 544 FNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHK 603

Query: 293 NIELEDRAEELIFSYDPS------MAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMP 352
           +  L     E +F  DP       +   +       P  Q+AT     K R         
Sbjct: 604 DTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYP--QAATVRQTAKKRKLAKAPGYT 663

Query: 353 YKEEGEG------------------GKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQAL 412
             E GE                    KL+ L G+MREAGY P+T   LHD++EE ++  +
Sbjct: 664 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMV 723

Query: 413 QYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 455
           + HSERLAIA+GLI+T   T +RIIKNLR+C DCH   K++SKI  R ++VRD  RFHHF
Sbjct: 724 KVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHF 783

[Close]

BLAST of Carg18632-RA vs. ExPASy TrEMBL
Match: A0A6J1FHU4 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444273 PE=3 SV=1)

HSP 1 Score: 905.6 bits (2339), Expect = 1.1e-259
Identity = 449/454 (98.90%), Postives = 451/454 (99.34%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPN+LSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNSLSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNN LIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNNLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPT AKPPL PPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTAAKPPLLPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 454

[Close]

BLAST of Carg18632-RA vs. ExPASy TrEMBL
Match: A0A6J1FC52 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444273 PE=3 SV=1)

HSP 1 Score: 905.6 bits (2339), Expect = 1.1e-259
Identity = 449/454 (98.90%), Postives = 451/454 (99.34%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPN+LSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNSLSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNN LIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNNLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPT AKPPL PPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTAAKPPLLPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 454

[Close]

BLAST of Carg18632-RA vs. ExPASy TrEMBL
Match: A0A6J1HQH5 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111465773 PE=3 SV=1)

HSP 1 Score: 877.9 bits (2267), Expect = 2.5e-251
Identity = 437/454 (96.26%), Postives = 443/454 (97.58%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLS PSTV LVALCEAGEVMDVLEFIG GANLDYGI TALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSPPSTVHLVALCEAGEVMDVLEFIGHGANLDYGIFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMK+VGLQPNSETFL VLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKNVGLQPNSETFLAVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYL VVDVLGKSGHLIEAEEFIKK+PI+PTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLRVVDVLGKSGHLIEAEEFIKKMPISPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPT AKPPLPP RKQS TNMLEEKDRVR+FRC+MP KEEGE GKLKGLN
Sbjct: 301 EELIFSYDPSMAPTAAKPPLPPLRKQSVTNMLEEKDRVRDFRCSMPSKEEGERGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 454

[Close]

BLAST of Carg18632-RA vs. ExPASy TrEMBL
Match: A0A1S3C9A6 (pentatricopeptide repeat-containing protein At2g15690-like OS=Cucumis melo OX=3656 GN=LOC103498440 PE=3 SV=1)

HSP 1 Score: 761.9 bits (1966), Expect = 2.0e-216
Identity = 383/454 (84.36%), Postives = 409/454 (90.09%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           M+SSI S  T NSI TTNF S IIP H PAVKSFR T    NALSNS  RK AR+YD Q+
Sbjct: 1   MSSSIHSHATVNSIATTNFKSLIIPIHFPAVKSFRSTPLSTNALSNSRFRKAARQYDAQS 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLS+SQN+TSDSV S PSTVDL+ALCE G+V+D LE+IGQGA +DYG+ TALLNSCC
Sbjct: 61  TTNTLSESQNQTSDSVYSFPSTVDLLALCEEGKVIDALEYIGQGAKVDYGVFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           N KLLEAGRRVD LLKGTKF GDV LNNKLIEMYS CGCMK+AR+VFDKMP++D RTWNL
Sbjct: 121 NLKLLEAGRRVDGLLKGTKFRGDVELNNKLIEMYSNCGCMKNARKVFDKMPNKDTRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGD GLALFE+MK+VGLQPNSETFLV+LAACAMAEAVEEG+FYFN M NEY
Sbjct: 181 MIKGYGENGEGDNGLALFEKMKNVGLQPNSETFLVILAACAMAEAVEEGVFYFNIMGNEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GI PEIEHYLGV+DVLGKSGHLIEAEEFI+K+PINPTAKIWDALR YARLHGN+ELEDRA
Sbjct: 241 GIDPEIEHYLGVIDVLGKSGHLIEAEEFIEKMPINPTAKIWDALRNYARLHGNMELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EEL+FS DPS   T  KP LPP RKQS+TNMLEEKDRVREFR AMPYKEEGE GKLKGLN
Sbjct: 301 EELMFSLDPSTTATTTKPSLPPRRKQSSTNMLEEKDRVREFRSAMPYKEEGE-GKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQM+EAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMKEAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 453

[Close]

BLAST of Carg18632-RA vs. ExPASy TrEMBL
Match: A0A0A0LEV9 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000530 PE=3 SV=1)

HSP 1 Score: 761.5 bits (1965), Expect = 2.6e-216
Identity = 380/454 (83.70%), Postives = 409/454 (90.09%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           M+SSIPS  T NS  TTNF SRI+P+H P +KSFR TL   NALSNS  RK A +YD Q+
Sbjct: 1   MSSSIPSHATVNSTATTNFKSRILPFHFPVLKSFRSTLLSTNALSNSRFRKSAHQYDAQS 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSV SLPSTVDL+ALCE G+V+DVLE+IGQGA +DYG+ TALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVYSLPSTVDLLALCEEGKVIDVLEYIGQGAKVDYGVFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           N KLLEAGRRVD LLKGTKF GD+ LNN+LIEMYS CGCMKDAR+VFDKM ++D  +WNL
Sbjct: 121 NLKLLEAGRRVDGLLKGTKFRGDLELNNRLIEMYSNCGCMKDARKVFDKMANKDTSSWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYG+NGEGD GLALFE+MK+ GLQPNSETFLVVLAACAMAEAV+EG+FYF  M NEY
Sbjct: 181 MIKGYGDNGEGDNGLALFEQMKNAGLQPNSETFLVVLAACAMAEAVKEGVFYFKIMANEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GI PEIEHYLGVVDVLGKSGHLIEAEEFI+K+PINPTAKIWDALR YARLHGN+ELEDRA
Sbjct: 241 GINPEIEHYLGVVDVLGKSGHLIEAEEFIEKMPINPTAKIWDALRNYARLHGNMELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EEL+FS DPS   T  KP LPP RKQS+TNMLEEKDRVREFRCAMPYKEEGE G+LKGLN
Sbjct: 301 EELMFSLDPSTTSTTIKPSLPPRRKQSSTNMLEEKDRVREFRCAMPYKEEGE-GRLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 453

[Close]

BLAST of Carg18632-RA vs. TAIR 10
Match: AT2G15690.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 403.3 bits (1035), Expect = 3.5e-112
Identity = 209/410 (50.98%), Postives = 268/410 (65.37%), Query Frame = 0


Query: 45  SNSSNRKPARRYDGQTTTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQG 104
           SN S     ++        + ++S N+ ++ V   PS  +++ LC+     D +E + +G
Sbjct: 173 SNQSQYYTPQQQQQPQPPRSSNQSPNQMNE-VAPPPSVEEVMRLCQRRLYKDAIELLDKG 232

Query: 105 ANLDYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDAR 164
           A  D      L  SC N K LE  ++V      +KF GD  LNN +I M+  C  + DA+
Sbjct: 233 AMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAK 292

Query: 165 RVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAE 224
           RVFD M D+D+ +W+LM+  Y +NG GD  L LFE M   GL+PN ETFL V  ACA   
Sbjct: 293 RVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVG 352

Query: 225 AVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDAL 284
            +EE   +F+SM+NE+GI P+ EHYLGV+ VLGK GHL+EAE++I+ +P  PTA  W+A+
Sbjct: 353 GIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADFWEAM 412

Query: 285 RIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCA 344
           R YARLHG+I+LED  EEL+   DPS A  + K P PPP+    TNM+  K R+ EFR  
Sbjct: 413 RNYARLHGDIDLEDYMEELMVDVDPSKA-VINKIPTPPPKSFKETNMVTSKSRILEFRNL 472

Query: 345 MPYKEEGEGGKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLIST 404
             YK+E +    K      +   YVPDTR+VLHDID+EAK+QAL YHSERLAIAYG+I T
Sbjct: 473 TFYKDEAKEMAAK------KGVVYVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICT 532

Query: 405 PARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           P R TL IIKNLR+CGDCHN IKIMSKI+GR LIVRDNKRFHHFKDGKCS
Sbjct: 533 PPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCS 574

[Close]

BLAST of Carg18632-RA vs. TAIR 10
Match: AT4G32450.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 261.9 bits (668), Expect = 1.3e-69
Identity = 141/386 (36.53%), Postives = 220/386 (56.99%), Query Frame = 0


Query: 84  DLVALCEAGEVMDVLEFIGQGANLDYGICTALL----NSCCNFKLLEAGRRVDRLLKGTK 143
           +L ++C  G+V   +E I    N  Y +    L      C + + L+  + V   +  + 
Sbjct: 152 ELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSV 211

Query: 144 FSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFE 203
              D+   N +IEMYS CG ++DA  VF+ MP+R++ TW  +I+ + +NG+G+  +  F 
Sbjct: 212 GISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFS 271

Query: 204 RMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKS 263
           R K  G +P+ E F  +  AC +   + EGL +F SM  EYGIIP +EHY+ +V +L + 
Sbjct: 272 RFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEP 331

Query: 264 GHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPP 323
           G+L EA  F++   + P   +W+ L   +R+HG++ L DR ++++   D S     +K  
Sbjct: 332 GYLDEALRFVES--MEPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAG 391

Query: 324 LPPPRKQSATNMLEEK--DRVREFRCAMPYKEEGEGGK---------LKGLNGQMREAGY 383
           L P +   ++++++EK     +     + Y   G+  +         LK L   M E GY
Sbjct: 392 LVPVK---SSDLVKEKLQRMAKGPNYGIRYMAAGDISRPENRELYMALKSLKEHMIEIGY 451

Query: 384 VPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKI 443
           VP ++  LHD+D+E+K + L  H+ER A     + TPAR+ +R++KNLR+C DCHNA+K+
Sbjct: 452 VPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKL 511

Query: 444 MSKIVGRELIVRDNKRFHHFKDGKCS 455
           MSKIVGRELI RD KRFHH KDG CS
Sbjct: 512 MSKIVGRELISRDAKRFHHMKDGVCS 532

[Close]

BLAST of Carg18632-RA vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-69
Identity = 139/375 (37.07%), Postives = 219/375 (58.40%), Query Frame = 0


Query: 103 QGANLDYGICTALLNSCCNFKLLEAGRRV-DRLLKGTKFSGDVGLNNKLIEMYSCCGCMK 162
           +G  L+    ++ L++C +   LE G+++  RL+KG   +G   + N L+ MY  CG ++
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIE 462

Query: 163 DARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACA 222
           +A  +F +M  +DI +WN MI GY  +G G+  L  FE MK  GL+P+  T + VL+AC+
Sbjct: 463 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 522

Query: 223 MAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIW 282
               V++G  YF +M  +YG++P  +HY  +VD+LG++G L +A   +K +P  P A IW
Sbjct: 523 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIW 582

Query: 283 DALRIYARLHGNIELEDRAEELIFSYDP--------------------SMAPTVAKPPLP 342
             L   +R+HGN EL + A + IF+ +P                     +     +    
Sbjct: 583 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 642

Query: 343 PPRKQSATNMLEEKDRVREFRCAMPYKEEGEG--GKLKGLNGQMREAGYVPDTRYVLHDI 402
             +K    + +E +++   F     +  E +     L+ L+ +M++AGYV  T  VLHD+
Sbjct: 643 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDV 702

Query: 403 DEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIV 455
           +EE K++ ++YHSERLA+AYG++   +   +R+IKNLR+C DCHNAIK M++I GR +I+
Sbjct: 703 EEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIIL 762

[Close]

BLAST of Carg18632-RA vs. TAIR 10
Match: AT5G52630.1 (mitochondrial RNAediting factor 1 )

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-69
Identity = 144/369 (39.02%), Postives = 215/369 (58.27%), Query Frame = 0


Query: 108 DYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVF 167
           DY   +++++ C N  LLE GR++  L   + F     + + L+ +YS CG  + A +VF
Sbjct: 217 DYSF-SSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVF 276

Query: 168 DKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVE 227
           +++P +++  WN M+K Y ++      + LF+RMK  G++PN  TFL VL AC+ A  V+
Sbjct: 277 NEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVD 336

Query: 228 EGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIY 287
           EG +YF+ M+ E  I P  +HY  +VD+LG++G L EA E I  +PI+PT  +W AL   
Sbjct: 337 EGRYYFDQMK-ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTS 396

Query: 288 ARLHGNIELEDRAEELIFSYDP-------SMAPTVAKPPL-------------PPPRKQS 347
             +H N EL   A + +F   P       S++   A                    +K++
Sbjct: 397 CTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKET 456

Query: 348 ATNMLEEKDRVREFRCAMPYKEEGEG--GKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQ 407
             + +EE+++V  F       E+ +    KL  L  +M +AGY+ DT YVL ++D + K 
Sbjct: 457 GLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKN 516

Query: 408 QALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRF 455
           Q ++YHSERLAIA+GLI+ PA   +R++KNLR+CGDCHNAIK MS    R +IVRDN RF
Sbjct: 517 QTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRF 576

[Close]

BLAST of Carg18632-RA vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 261.2 bits (666), Expect = 2.1e-69
Identity = 145/366 (39.62%), Postives = 203/366 (55.46%), Query Frame = 0


Query: 113 TALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPD 172
           T +L++C     L  G+ V  L++ T F   + ++  LI MY+ CG + +ARR+FD M  
Sbjct: 424 TCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTK 483

Query: 173 RDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFY 232
           ++  TWN MI GYG +G+G   L +F  M + G+ P   TFL VL AC+ A  V+EG   
Sbjct: 484 KNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEI 543

Query: 233 FNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHG 292
           FNSM + YG  P ++HY  +VD+LG++GHL  A +FI+ + I P + +W+ L    R+H 
Sbjct: 544 FNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHK 603

Query: 293 NIELEDRAEELIFSYDPS------MAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMP 352
           +  L     E +F  DP       +   +       P  Q+AT     K R         
Sbjct: 604 DTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYP--QAATVRQTAKKRKLAKAPGYT 663

Query: 353 YKEEGEG------------------GKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQAL 412
             E GE                    KL+ L G+MREAGY P+T   LHD++EE ++  +
Sbjct: 664 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMV 723

Query: 413 QYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 455
           + HSERLAIA+GLI+T   T +RIIKNLR+C DCH   K++SKI  R ++VRD  RFHHF
Sbjct: 724 KVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHF 783

The following BLAST results are available for this feature:

BLAST of Carg18632-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021339.1	0.0e+00	100.00	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG6586480.1	0.0e+00	99.51	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022938077.1	2.3e-259	98.90	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isofor...	[more]
XP_022938076.1	2.3e-259	98.90	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isofor...	[more]
XP_023538219.1	2.8e-257	98.24	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucur...	[more]

BLAST of Carg18632-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQE5	4.9e-111	50.98	Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidop...	[more]
Q9SUU7	1.8e-68	36.53	Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidop...	[more]
Q9SY02	2.3e-68	37.07	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
Q9LTF4	2.3e-68	39.02	Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis th...	[more]
Q9SUH6	3.0e-68	39.62	Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg18632-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHU4	1.1e-259	98.90	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isofor...	[more]
A0A6J1FC52	1.1e-259	98.90	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isofor...	[more]
A0A6J1HQH5	2.5e-251	96.26	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like OS=Cuc...	[more]
A0A1S3C9A6	2.0e-216	84.36	pentatricopeptide repeat-containing protein At2g15690-like OS=Cucumis melo OX=36...	[more]
A0A0A0LEV9	2.6e-216	83.70	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G0005...	[more]

BLAST of Carg18632-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15690.1	3.5e-112	50.98	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G32450.1	1.3e-69	36.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G02750.1	1.6e-69	37.07	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G52630.1	1.6e-69	39.02	mitochondrial RNAediting factor 1	[more]
AT4G30700.1	2.1e-69	39.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 355..449 e-value: 1.1E-32 score: 112.5
IPR006808	ATP synthase, F0 complex, subunit G, mitochondrial	PFAM	PF04718	ATP-synt_G	coord: 502..607 e-value: 2.8E-20 score: 73.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 82..239 e-value: 3.8E-27 score: 97.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 174..221 e-value: 8.5E-10 score: 38.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 177..209 e-value: 7.3E-8 score: 30.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 174..208 score: 12.506901
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..73
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 4..454
None	No IPR available	PANTHER	PTHR24015:SF1685	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 4..454

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18632	Carg18632	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18632-RA:4	Carg18632-RA:4	exon
Carg18632-RA:3	Carg18632-RA:3	exon
Carg18632-RA:2	Carg18632-RA:2	exon
Carg18632-RA:1	Carg18632-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18632-RA:three_prime_utr	Carg18632-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18632-RA:cds	Carg18632-RA:cds_4	CDS
Carg18632-RA:cds	Carg18632-RA:cds_3	CDS
Carg18632-RA:cds	Carg18632-RA:cds_2	CDS
Carg18632-RA:cds	Carg18632-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18632-RA	Carg18632-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009451	RNA modification
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0005515	protein binding
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003723	RNA binding