Carg17476-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17476-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	prostatic spermine-binding protein-like
Location	Carg_Chr12: 11134965 .. 11137457 (+)
Sequence length	761
RNA-Seq Expression	Carg17476-RA
Synteny	Carg17476-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGAAGAGCCCTAATCGGACCAAAGCCTAGGGTTTACCCCAACTGGACTTAAACCCAACTCTTCTCCCAAATCTCAGAAAAGCCACTCACCTTCTCTCTCTCTGTGAATCACTGCCAGGCCCATCTCTCTTTCACTCTCTCTGCGAGCTTCCTTCTCTCTTTCTTTCGTGCTAGTGCCTCTTTCTCTTCACTTTTGAGCTTATTGTTGCGGCAATGGAGTTGGGCGGCGTGGGCTTCGTCGACAGAACCATGTGGGTTCGCTCTGTTTTGGAAGCAATCGCGGTGGAGACTGTTTTCACCACTGCGAGCTCCCTAGCTTGCCTTCTGGCGGCGGTAAACCCTCATTTTCATATTACTCATTGATGGGGTTTTAGTTTTTTTTTTTTATGGATTCTACTGATTTTAGTCATTGTTCTTACTTCTAGGAGCTTAAGTTTCTCTGCCCTTTGGATTTTCTTGTGCTGTTGTTTTCTTTATTGGTGTTTGTAGGTCAAGAGTTTTCGCTTTCTTACTTCTGGTTTTACTCTAACTTGTTTGTTTTCTTCTCCGGTTATGGTGTTTCCATTACTAACAACAGGGTTTCTCTGTCATTGTTCTTTATTGGGTGCTGCTACATACGTGAAATTTTAGCTGAAAATGATGAACATTGACCTGTTTTGAAGCTAAGTGTTTGTTTTAGTGATAAATGTGGATGGAGGGCATGGTTTTTTTCTCACGTTTTGGTGACATTTTGGCCAAGAACAAGACATCTCTGTCAGGATTTTGCCATTATATAGTTAAATTATACTATATTGGATACATGAGATCCCACGTTGGTTGTAAAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCTCTAGTATATGCGTTTTAAAACTGTGAGGCTGATAGCAATACATAACAGGCCAAAGTGGACAATATTTGCTAACGGTGGGCTTGAGATGTTACAAATGGTATCAGAGCTAGACATTAGACGGTGTGCTAGCAAGGATGTTGGCTCCCCAAGGGGGTGGATTGTGAGATCCCACATCGGTCGGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCCCCTAATAGATGCGTTTTAATATCGTAAGGCTGACGACGATTGATATCTAATCTTGTTCATTTCAAATGCTTTTTGTTCATCAAGCTATAGCTATCCTTTGCACTTCGGTGGTTCTTGCTGGAAGTTGATTTTCACTTCATTAGAATTTATTGTCTAATCAACTCCTGCTTTCTAATTTCTTCTGGGTATTTTCCTTTTTGGCTCCTTGACTCGAGGAAGTTCAAATGCACTTGTTTTGTTACTCTCAAGTTCTTCCTGTCCCGACATCTCACTGAATCGATCGACTCGTTACAGAACGGGACAGCAAATCTCACACGAATTCCATAATTTTGGTGACTATTGATTTCAAGTTACTTACATTCTCACTTTGTCCTACAATTTTTGTGACTCTATTGCATAATAGACGTTTGTTGGCATTCCAACCTTCCTTCTCCTTTTCGGGCCCACCCGAAAGAGAATCCAGTGTTTTTTTAGTCGTGAATATCTGAATAGGACAAACCGTCCCGTGGTTTGCTTCGGACCAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTAATTATCCATATACGAGATCTTTCAATGGAGAAGATCCGTCAACTTAAGACGAAGAGAAGGGTTTATCTATTTTATTTAGTTATTCCGTTAAACCAATGATTTGCCTTGACAAGCCATATCGGGTTAGACGTTTCAGTCAAGCCATAACTGGAAGTGTTGTTTTTGAATCCGATGCTTTGCTTCGAATCTTCTTTGAAGTTTATTATTTGGTGTGGAATTTCTTGATCTTTTTTAGGACAATTCCGACAATAAGAAACAACTTGCTTCAGACTTTAATTCAGTTTGTTCTTCAGACAGGAGCTCTGTTAAACGATGCCAATGCTCTACCAGGATTTGCTGCAATTGAGGAAATGTAATGAAATTTAATGTCATTTATGTGTTTTCACTTTAAATAAGTTTAGGTTGGTTCTGAGATTACTGGCCTTTTCTCCTCTTCTAGGTTCCCTTTTGCCGAACTTCACCGAAAGAAACGCCCCGACCAGGAAAACAAAGATGGCAGTGAAACCGAGGACGATGATGAAGATGACGACGACGATGACGCGAATGATCAGGATGACGATGACGATGACGAAGATTTCTCCGGAGGTGAAGAAGGAGATGATGGTGATCCAGAGGATGACCCTGAAGCAAATGGCGATGGAGGAGCTGGAGGTGATGATGACAATGGAGATGAAGACGACGACGACGACAATGGAGACGATGACGATGAGGATGAGGAAGAGGAAGAAGATGAGGACGATGAAGATGACGAGGAGGAAACGCCTCAGCCACCCACCAAGAAGAGGAAGTGAGGATGTCCATTGGCGCTCCCCATTTTCGAGTTTCGAGTTTCGAGTTTCG

mRNA sequence

AAATGAAGAGCCCTAATCGGACCAAAGCCTAGGGTTTACCCCAACTGGACTTAAACCCAACTCTTCTCCCAAATCTCAGAAAAGCCACTCACCTTCTCTCTCTCTGTGAATCACTGCCAGGCCCATCTCTCTTTCACTCTCTCTGCGAGCTTCCTTCTCTCTTTCTTTCGTGCTAGTGCCTCTTTCTCTTCACTTTTGAGCTTATTGTTGCGGCAATGGAGTTGGGCGGCGTGGGCTTCGTCGACAGAACCATGTGGGTTCGCTCTGTTTTGGAAGCAATCGCGGTGGAGACTGTTTTCACCACTGCGAGCTCCCTAGCTTGCCTTCTGGCGGCGACAGGAGCTCTGTTAAACGATGCCAATGCTCTACCAGGATTTGCTGCAATTGAGGAAATGTTCCCTTTTGCCGAACTTCACCGAAAGAAACGCCCCGACCAGGAAAACAAAGATGGCAGTGAAACCGAGGACGATGATGAAGATGACGACGACGATGACGCGAATGATCAGGATGACGATGACGATGACGAAGATTTCTCCGGAGGTGAAGAAGGAGATGATGGTGATCCAGAGGATGACCCTGAAGCAAATGGCGATGGAGGAGCTGGAGGTGATGATGACAATGGAGATGAAGACGACGACGACGACAATGGAGACGATGACGATGAGGATGAGGAAGAGGAAGAAGATGAGGACGATGAAGATGACGAGGAGGAAACGCCTCAGCCACCCACCAAGAAGAGGAATTTCGAGTTTCGAGTTTCG

Coding sequence (CDS)

ATGGAGTTGGGCGGCGTGGGCTTCGTCGACAGAACCATGTGGGTTCGCTCTGTTTTGGAAGCAATCGCGGTGGAGACTGTTTTCACCACTGCGAGCTCCCTAGCTTGCCTTCTGGCGGCGACAGGAGCTCTGTTAAACGATGCCAATGCTCTACCAGGATTTGCTGCAATTGAGGAAATGTTCCCTTTTGCCGAACTTCACCGAAAGAAACGCCCCGACCAGGAAAACAAAGATGGCAGTGAAACCGAGGACGATGATGAAGATGACGACGACGATGACGCGAATGATCAGGATGACGATGACGATGACGAAGATTTCTCCGGAGGTGAAGAAGGAGATGATGGTGATCCAGAGGATGACCCTGAAGCAAATGGCGATGGAGGAGCTGGAGGTGATGATGACAATGGAGATGAAGACGACGACGACGACAATGGAGACGATGACGATGAGGATGAGGAAGAGGAAGAAGATGAGGACGATGAAGATGACGAGGAGGAAACGCCTCAGCCACCCACCAAGAAGAGGAATTTCGAGTTTCGAGTTTCG

Protein sequence

MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEMFPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDDPEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKRNFEFRVS

Homology

[Close]

BLAST of Carg17476-RA vs. NCBI nr
Match: KAG7021218.1 (hypothetical protein SDJN02_17906, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 5.8e-73
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKRNFEFR 180
           PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKRNFEFR
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKRNFEFR 180

Query: 181 VS 183
           VS
Sbjct: 181 VS 182

[Close]

BLAST of Carg17476-RA vs. NCBI nr
Match: KAG6586370.1 (hypothetical protein SDJN03_19103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 175

[Close]

BLAST of Carg17476-RA vs. NCBI nr
Match: XP_022938180.1 (prostatic spermine-binding protein-like [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MELGGVGFVDRTMWVRSVLEAIAVETVFTTA+SLACLLAA GALLNDANALPGFAAIEEM
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDGGAGGDDDNGDEDDDDDNGDDDD+DEEEEEDEDDEDDEEETPQPPTKKR
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDDDEEEEEDEDDEDDEEETPQPPTKKR 175

[Close]

BLAST of Carg17476-RA vs. NCBI nr
Match: XP_023522765.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.1 bits (671), Expect = 1.8e-66
Identity = 171/175 (97.71%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MELGGVGFVDRTMWVRSVLEAIAVETVFTTA+SLACLLAA GALLNDANALPG AAIEEM
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGCAAIEEM 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDGGAGGDDDNGDEDDDDDNGDDDD+DEEEEEDEDDEDDEEETPQPPTKKR
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDDDEEEEEDEDDEDDEEETPQPPTKKR 175

[Close]

BLAST of Carg17476-RA vs. NCBI nr
Match: XP_022965978.1 (prostatic spermine-binding protein-like [Cucurbita maxima])

HSP 1 Score: 251.9 bits (642), Expect = 4.2e-63
Identity = 166/175 (94.86%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MELGGVGFVDRTMWVRSVLEAIAVETVFTTA+SLACLLAA GALLNDANALPGFAAIEEM
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELHRKK PDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKSPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDGGAGGDDDNGDEDDDDD+ + DD DEEEEED+DDEDDEEETPQPPTKKR
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDDDNGDDGDEEEEEDDDDEDDEEETPQPPTKKR 175

[Close]

BLAST of Carg17476-RA vs. ExPASy TrEMBL
Match: A0A6J1FIZ1 (prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111444342 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67
Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MELGGVGFVDRTMWVRSVLEAIAVETVFTTA+SLACLLAA GALLNDANALPGFAAIEEM
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDGGAGGDDDNGDEDDDDDNGDDDD+DEEEEEDEDDEDDEEETPQPPTKKR
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDDDEEEEEDEDDEDDEEETPQPPTKKR 175

[Close]

BLAST of Carg17476-RA vs. ExPASy TrEMBL
Match: A0A6J1HQJ4 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111465698 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.0e-63
Identity = 166/175 (94.86%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MELGGVGFVDRTMWVRSVLEAIAVETVFTTA+SLACLLAA GALLNDANALPGFAAIEEM
Sbjct: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPFAELHRKK PDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFAELHRKKSPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDGGAGGDDDNGDEDDDDD+ + DD DEEEEED+DDEDDEEETPQPPTKKR
Sbjct: 121 PEANGDGGAGGDDDNGDEDDDDDDDNGDDGDEEEEEDDDDEDDEEETPQPPTKKR 175

[Close]

BLAST of Carg17476-RA vs. ExPASy TrEMBL
Match: A0A6J1KGN6 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493719 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.7e-51
Identity = 142/175 (81.14%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MEL GVGF++RTMWV SVLEA+ +ETVF TA+SLACLLAATGALLN+ANA PG AAIEE 
Sbjct: 1   MELEGVGFMERTMWVSSVLEAMVMETVFVTANSLACLLAATGALLNNANATPGLAAIEER 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPF+ELH+K+RP+QENKDGSETEDD++DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFSELHKKQRPNQENKDGSETEDDEDDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDG AGGD++  D+D+DDDNG+D+D+DEEEEEDE++ED+EEETPQPP KKR
Sbjct: 121 PEANGDGRAGGDEE--DDDEDDDNGEDEDDDEEEEEDEEEEDEEEETPQPPAKKR 173

[Close]

BLAST of Carg17476-RA vs. ExPASy TrEMBL
Match: A0A1S3C539 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496993 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.3e-50
Identity = 142/175 (81.14%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MEL  V FV+RTMW RSVLEA+AVETVFTTA+SLACLLA  GA+LN AN  PG AAIEE 
Sbjct: 1   MELDCVSFVERTMWERSVLEAMAVETVFTTANSLACLLAVAGAMLNIANGTPGLAAIEER 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPF+ELH+K+RPDQENKDGSETEDD++DDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFSELHKKERPDQENKDGSETEDDEDDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDG AGGD++  D+DDDDDNGDDDD+D++E+EDED+ED+EEETPQPP KKR
Sbjct: 121 PEANGDGRAGGDEE--DDDDDDDNGDDDDDDDDEDEDEDEEDEEEETPQPPAKKR 173

[Close]

BLAST of Carg17476-RA vs. ExPASy TrEMBL
Match: A0A6J1G306 (mitotic apparatus protein p62-like OS=Cucurbita moschata OX=3662 GN=LOC111450321 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 7.5e-50
Identity = 142/175 (81.14%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60
           MEL GVGF++RTMWV SVLEA+ +ETVF TA+SLACLLAATGALLN+ANA PG AAIEE 
Sbjct: 1   MELEGVGFMERTMWVSSVLEAMVMETVFVTANSLACLLAATGALLNNANATPGLAAIEER 60

Query: 61  FPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDD 120
           FPF+ELH+K+RPDQENKDGSETEDD++DDDDDDANDQ DDDDDEDFSGGEEGDDGDPEDD
Sbjct: 61  FPFSELHKKERPDQENKDGSETEDDEDDDDDDDANDQ-DDDDDEDFSGGEEGDDGDPEDD 120

Query: 121 PEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKR 176
           PEANGDG AGGD++  D+D+DDDNG+D+D+DEEEEEDE++ED+EEETPQPP KKR
Sbjct: 121 PEANGDGRAGGDEE--DDDEDDDNGEDEDDDEEEEEDEEEEDEEEETPQPPAKKR 172

[Close]

BLAST of Carg17476-RA vs. TAIR 10
Match: AT2G11910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to 31060 proteins in 1576 species: Archae - 765; Bacteria - 32670; Metazoa - 21164; Fungi - 12252; Plants - 4238; Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-06
Identity = 79/184 (42.93%), Postives = 114/184 (61.96%), Query Frame = 0


Query: 1   MELGGVGFVD---RTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAI 60
           ME+  VG +    +  W  SV E+     +     +LACLL    +L      L G  A+
Sbjct: 1   MEVVAVGSMKTQRQETWACSVTESF----LLLVGKNLACLLLVAESL------LIGLVAV 60

Query: 61  EEMFPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDG-- 120
           ++     E +++    +ENKD S+++DDD+D+D D+ +D +DD +DEDFSGG EGD+G  
Sbjct: 61  DQRLSVKEGYKRGSRIEENKDASDSDDDDDDEDADEDDDDEDDANDEDFSGG-EGDEGEE 120

Query: 121 --DPEDDPEANGDGGAGGDDDNGDEDDDDDNGDDDDEDE--EEEEDEDDEDDEEETPQPP 176
             DPEDDP  NG GG      + DEDDDD+ GD+DDEDE  E+EE++DDE+D+++  QPP
Sbjct: 121 EADPEDDPVTNGGGG------SDDEDDDDEEGDNDDEDEDNEDEEEDDDEEDDDDVRQPP 167

[Close]

BLAST of Carg17476-RA vs. TAIR 10
Match: AT2G11910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to 31060 proteins in 1576 species: Archae - 765; Bacteria - 32670; Metazoa - 21164; Fungi - 12252; Plants - 4238; Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-06
Identity = 79/184 (42.93%), Postives = 114/184 (61.96%), Query Frame = 0


Query: 1   MELGGVGFVD---RTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAI 60
           ME+  VG +    +  W  SV E+     +     +LACLL    +L      L G  A+
Sbjct: 1   MEVVAVGSMKTQRQETWACSVTESF----LLLVGKNLACLLLVAESL------LIGLVAV 60

Query: 61  EEMFPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDG-- 120
           ++     E +++    +ENKD S+++DDD+D+D D+ +D +DD +DEDFSGG EGD+G  
Sbjct: 61  DQRLSVKEGYKRGSRIEENKDASDSDDDDDDEDADEDDDDEDDANDEDFSGG-EGDEGEE 120

Query: 121 --DPEDDPEANGDGGAGGDDDNGDEDDDDDNGDDDDEDE--EEEEDEDDEDDEEETPQPP 176
             DPEDDP  NG GG      + DEDDDD+ GD+DDEDE  E+EE++DDE+D+++  QPP
Sbjct: 121 EADPEDDPVTNGGGG------SDDEDDDDEEGDNDDEDEDNEDEEEDDDEEDDDDVRQPP 167

The following BLAST results are available for this feature:

BLAST of Carg17476-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021218.1	5.8e-73	100.00	hypothetical protein SDJN02_17906, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6586370.1	1.1e-68	100.00	hypothetical protein SDJN03_19103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938180.1	2.1e-67	98.29	prostatic spermine-binding protein-like [Cucurbita moschata]	[more]
XP_023522765.1	1.8e-66	97.71	prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965978.1	4.2e-63	94.86	prostatic spermine-binding protein-like [Cucurbita maxima]	[more]

BLAST of Carg17476-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17476-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIZ1	1.0e-67	98.29	prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HQJ4	2.0e-63	94.86	prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111465...	[more]
A0A6J1KGN6	6.7e-51	81.14	prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493...	[more]
A0A1S3C539	3.3e-50	81.14	phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3...	[more]
A0A6J1G306	7.5e-50	81.14	mitotic apparatus protein p62-like OS=Cucurbita moschata OX=3662 GN=LOC111450321...	[more]

BLAST of Carg17476-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G11910.1	6.5e-06	42.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G11910.2	6.5e-06	42.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..182
None	No IPR available	PANTHER	PTHR35711	EXPRESSED PROTEIN	coord: 1..175

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17476	Carg17476	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17476-RA:1	Carg17476-RA:1	exon
Carg17476-RA:2	Carg17476-RA:2	exon
Carg17476-RA:3	Carg17476-RA:3	exon
Carg17476-RA:4	Carg17476-RA:4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17476-RA:five_prime_utr	Carg17476-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17476-RA:cds	Carg17476-RA:cds	CDS
Carg17476-RA:cds	Carg17476-RA:cds_2	CDS
Carg17476-RA:cds	Carg17476-RA:cds_3	CDS
Carg17476-RA:cds	Carg17476-RA:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17476-RA	Carg17476-RA-protein	polypeptide