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Carg17476 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAATGAAGAGCCCTAATCGGACCAAAGCCTAGGGTTTACCCCAACTGGACTTAAACCCAACTCTTCTCCCAAATCTCAGAAAAGCCACTCACCTTCTCTCTCTCTGTGAATCACTGCCAGGCCCATCTCTCTTTCACTCTCTCTGCGAGCTTCCTTCTCTCTTTCTTTCGTGCTAGTGCCTCTTTCTCTTCACTTTTGAGCTTATTGTTGCGGCAATGGAGTTGGGCGGCGTGGGCTTCGTCGACAGAACCATGTGGGTTCGCTCTGTTTTGGAAGCAATCGCGGTGGAGACTGTTTTCACCACTGCGAGCTCCCTAGCTTGCCTTCTGGCGGCGGTAAACCCTCATTTTCATATTACTCATTGATGGGGTTTTAGTTTTTTTTTTTTATGGATTCTACTGATTTTAGTCATTGTTCTTACTTCTAGGAGCTTAAGTTTCTCTGCCCTTTGGATTTTCTTGTGCTGTTGTTTTCTTTATTGGTGTTTGTAGGTCAAGAGTTTTCGCTTTCTTACTTCTGGTTTTACTCTAACTTGTTTGTTTTCTTCTCCGGTTATGGTGTTTCCATTACTAACAACAGGGTTTCTCTGTCATTGTTCTTTATTGGGTGCTGCTACATACGTGAAATTTTAGCTGAAAATGATGAACATTGACCTGTTTTGAAGCTAAGTGTTTGTTTTAGTGATAAATGTGGATGGAGGGCATGGTTTTTTTCTCACGTTTTGGTGACATTTTGGCCAAGAACAAGACATCTCTGTCAGGATTTTGCCATTATATAGTTAAATTATACTATATTGGATACATGAGATCCCACGTTGGTTGTAAAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCTCTAGTATATGCGTTTTAAAACTGTGAGGCTGATAGCAATACATAACAGGCCAAAGTGGACAATATTTGCTAACGGTGGGCTTGAGATGTTACAAATGGTATCAGAGCTAGACATTAGACGGTGTGCTAGCAAGGATGTTGGCTCCCCAAGGGGGTGGATTGTGAGATCCCACATCGGTCGGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCCCCTAATAGATGCGTTTTAATATCGTAAGGCTGACGACGATTGATATCTAATCTTGTTCATTTCAAATGCTTTTTGTTCATCAAGCTATAGCTATCCTTTGCACTTCGGTGGTTCTTGCTGGAAGTTGATTTTCACTTCATTAGAATTTATTGTCTAATCAACTCCTGCTTTCTAATTTCTTCTGGGTATTTTCCTTTTTGGCTCCTTGACTCGAGGAAGTTCAAATGCACTTGTTTTGTTACTCTCAAGTTCTTCCTGTCCCGACATCTCACTGAATCGATCGACTCGTTACAGAACGGGACAGCAAATCTCACACGAATTCCATAATTTTGGTGACTATTGATTTCAAGTTACTTACATTCTCACTTTGTCCTACAATTTTTGTGACTCTATTGCATAATAGACGTTTGTTGGCATTCCAACCTTCCTTCTCCTTTTCGGGCCCACCCGAAAGAGAATCCAGTGTTTTTTTAGTCGTGAATATCTGAATAGGACAAACCGTCCCGTGGTTTGCTTCGGACCAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTAATTATCCATATACGAGATCTTTCAATGGAGAAGATCCGTCAACTTAAGACGAAGAGAAGGGTTTATCTATTTTATTTAGTTATTCCGTTAAACCAATGATTTGCCTTGACAAGCCATATCGGGTTAGACGTTTCAGTCAAGCCATAACTGGAAGTGTTGTTTTTGAATCCGATGCTTTGCTTCGAATCTTCTTTGAAGTTTATTATTTGGTGTGGAATTTCTTGATCTTTTTTAGGACAATTCCGACAATAAGAAACAACTTGCTTCAGACTTTAATTCAGTTTGTTCTTCAGACAGGAGCTCTGTTAAACGATGCCAATGCTCTACCAGGATTTGCTGCAATTGAGGAAATGTAATGAAATTTAATGTCATTTATGTGTTTTCACTTTAAATAAGTTTAGGTTGGTTCTGAGATTACTGGCCTTTTCTCCTCTTCTAGGTTCCCTTTTGCCGAACTTCACCGAAAGAAACGCCCCGACCAGGAAAACAAAGATGGCAGTGAAACCGAGGACGATGATGAAGATGACGACGACGATGACGCGAATGATCAGGATGACGATGACGATGACGAAGATTTCTCCGGAGGTGAAGAAGGAGATGATGGTGATCCAGAGGATGACCCTGAAGCAAATGGCGATGGAGGAGCTGGAGGTGATGATGACAATGGAGATGAAGACGACGACGACGACAATGGAGACGATGACGATGAGGATGAGGAAGAGGAAGAAGATGAGGACGATGAAGATGACGAGGAGGAAACGCCTCAGCCACCCACCAAGAAGAGGAAGTGAGGATGTCCATTGGCGCTCCCCATTTTCGAGTTTCGAGTTTCGAGTTTCG AAATGAAGAGCCCTAATCGGACCAAAGCCTAGGGTTTACCCCAACTGGACTTAAACCCAACTCTTCTCCCAAATCTCAGAAAAGCCACTCACCTTCTCTCTCTCTGTGAATCACTGCCAGGCCCATCTCTCTTTCACTCTCTCTGCGAGCTTCCTTCTCTCTTTCTTTCGTGCTAGTGCCTCTTTCTCTTCACTTTTGAGCTTATTGTTGCGGCAATGGAGTTGGGCGGCGTGGGCTTCGTCGACAGAACCATGTGGGTTCGCTCTGTTTTGGAAGCAATCGCGGTGGAGACTGTTTTCACCACTGCGAGCTCCCTAGCTTGCCTTCTGGCGGCGACAGGAGCTCTGTTAAACGATGCCAATGCTCTACCAGGATTTGCTGCAATTGAGGAAATGTTCCCTTTTGCCGAACTTCACCGAAAGAAACGCCCCGACCAGGAAAACAAAGATGGCAGTGAAACCGAGGACGATGATGAAGATGACGACGACGATGACGCGAATGATCAGGATGACGATGACGATGACGAAGATTTCTCCGGAGGTGAAGAAGGAGATGATGGTGATCCAGAGGATGACCCTGAAGCAAATGGCGATGGAGGAGCTGGAGGTGATGATGACAATGGAGATGAAGACGACGACGACGACAATGGAGACGATGACGATGAGGATGAGGAAGAGGAAGAAGATGAGGACGATGAAGATGACGAGGAGGAAACGCCTCAGCCACCCACCAAGAAGAGGAATTTCGAGTTTCGAGTTTCG ATGGAGTTGGGCGGCGTGGGCTTCGTCGACAGAACCATGTGGGTTCGCTCTGTTTTGGAAGCAATCGCGGTGGAGACTGTTTTCACCACTGCGAGCTCCCTAGCTTGCCTTCTGGCGGCGACAGGAGCTCTGTTAAACGATGCCAATGCTCTACCAGGATTTGCTGCAATTGAGGAAATGTTCCCTTTTGCCGAACTTCACCGAAAGAAACGCCCCGACCAGGAAAACAAAGATGGCAGTGAAACCGAGGACGATGATGAAGATGACGACGACGATGACGCGAATGATCAGGATGACGATGACGATGACGAAGATTTCTCCGGAGGTGAAGAAGGAGATGATGGTGATCCAGAGGATGACCCTGAAGCAAATGGCGATGGAGGAGCTGGAGGTGATGATGACAATGGAGATGAAGACGACGACGACGACAATGGAGACGATGACGATGAGGATGAGGAAGAGGAAGAAGATGAGGACGATGAAGATGACGAGGAGGAAACGCCTCAGCCACCCACCAAGAAGAGGAATTTCGAGTTTCGAGTTTCG MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEMFPFAELHRKKRPDQENKDGSETEDDDEDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDDPEANGDGGAGGDDDNGDEDDDDDNGDDDDEDEEEEEDEDDEDDEEETPQPPTKKRNFEFRVS Homology
BLAST of Carg17476 vs. NCBI nr
Match: KAG7021218.1 (hypothetical protein SDJN02_17906, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 284.6 bits (727), Expect = 5.8e-73 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Carg17476 vs. NCBI nr
Match: KAG6586370.1 (hypothetical protein SDJN03_19103, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of Carg17476 vs. NCBI nr
Match: XP_022938180.1 (prostatic spermine-binding protein-like [Cucurbita moschata]) HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67 Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 0
BLAST of Carg17476 vs. NCBI nr
Match: XP_023522765.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 263.1 bits (671), Expect = 1.8e-66 Identity = 171/175 (97.71%), Postives = 173/175 (98.86%), Query Frame = 0
BLAST of Carg17476 vs. NCBI nr
Match: XP_022965978.1 (prostatic spermine-binding protein-like [Cucurbita maxima]) HSP 1 Score: 251.9 bits (642), Expect = 4.2e-63 Identity = 166/175 (94.86%), Postives = 170/175 (97.14%), Query Frame = 0
BLAST of Carg17476 vs. ExPASy TrEMBL
Match: A0A6J1FIZ1 (prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111444342 PE=4 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67 Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 0
BLAST of Carg17476 vs. ExPASy TrEMBL
Match: A0A6J1HQJ4 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111465698 PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 2.0e-63 Identity = 166/175 (94.86%), Postives = 170/175 (97.14%), Query Frame = 0
BLAST of Carg17476 vs. ExPASy TrEMBL
Match: A0A6J1KGN6 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493719 PE=4 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 6.7e-51 Identity = 142/175 (81.14%), Postives = 164/175 (93.71%), Query Frame = 0
BLAST of Carg17476 vs. ExPASy TrEMBL
Match: A0A1S3C539 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496993 PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 3.3e-50 Identity = 142/175 (81.14%), Postives = 160/175 (91.43%), Query Frame = 0
BLAST of Carg17476 vs. ExPASy TrEMBL
Match: A0A6J1G306 (mitotic apparatus protein p62-like OS=Cucurbita moschata OX=3662 GN=LOC111450321 PE=4 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 7.5e-50 Identity = 142/175 (81.14%), Postives = 163/175 (93.14%), Query Frame = 0
BLAST of Carg17476 vs. TAIR 10
Match: AT2G11910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to 31060 proteins in 1576 species: Archae - 765; Bacteria - 32670; Metazoa - 21164; Fungi - 12252; Plants - 4238; Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 6.5e-06 Identity = 79/184 (42.93%), Postives = 114/184 (61.96%), Query Frame = 0
BLAST of Carg17476 vs. TAIR 10
Match: AT2G11910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to 31060 proteins in 1576 species: Archae - 765; Bacteria - 32670; Metazoa - 21164; Fungi - 12252; Plants - 4238; Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 6.5e-06 Identity = 79/184 (42.93%), Postives = 114/184 (61.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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