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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCGTACAGTTGCATCCCAACCGCTGTTCCCGCGCTTTCACAGAACAGGCATTGAAAACCTGCGCTAAGATTAGCTCATCAATCTGCGTTTTCCATTCGGATTTCTACGCCTTCCTTTCCGTAGTTCCGTCATAATCGATTCTTCTCCCAACTAATCAGGTTTTGATTGACTGGTCTCCGGCTTCCATTTCCCACACCATTTTCCTTTTCCGGCCACCGTCGATCAAAACCTGCCCATTTCCGCCCGTTCTCGTACGTCTACCTTCCTCAATCTTACGCTCAACCAGGTTTCACTCCCTTTTCTCTTTAATCTCCCTTTTATTTGGAAATCACGCTTTTATTTAAGCTGTGATTGTGAATTTTGTTTGAATCGCAGGCGTAG mRNA sequence ATGGCCGTACAGTTGCATCCCAACCGCTGTTCCCGCGCTTTCACAGAACAGGCATTGAAAACCTGCGCTAAGATTAGCTCATCAATCTGCGTTTTCCATTCGGATTTCTACGCCTTCCTTTCCGTTTTGATTGACTGGTCTCCGGCTTCCATTTCCCACACCATTTTCCTTTTCCGGCCACCGTCGATCAAAACCTGCCCATTTCCGCCCGTTCTCGCGTAG Coding sequence (CDS) ATGGCCGTACAGTTGCATCCCAACCGCTGTTCCCGCGCTTTCACAGAACAGGCATTGAAAACCTGCGCTAAGATTAGCTCATCAATCTGCGTTTTCCATTCGGATTTCTACGCCTTCCTTTCCGTTTTGATTGACTGGTCTCCGGCTTCCATTTCCCACACCATTTTCCTTTTCCGGCCACCGTCGATCAAAACCTGCCCATTTCCGCCCGTTCTCGCGTAG Protein sequence MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRPPSIKTCPFPPVLA
Homology
BLAST of Carg16553-RA vs. NCBI nr
Match: KAG7018799.1 (hypothetical protein SDJN02_20672, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 151.8 bits (382), Expect = 2.4e-33 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 Query: 1 MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRP 60 MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRP Sbjct: 1 MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRP 60
Query: 61 PSIKTCPFPPVLA 74 PSIKTCPFPPVLA Sbjct: 61 PSIKTCPFPPVLA 73
BLAST of Carg16553-RA vs. NCBI nr
Match: KAG6582395.1 (hypothetical protein SDJN03_22397, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 119.8 bits (299), Expect = 9.9e-24 Identity = 61/72 (84.72%), Postives = 61/72 (84.72%), Query Frame = 0 Query: 1 MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRP 60 MAVQLHPNRCSRAFTEQALKTCAKISSSIC VLIDWSPASISHTIFLFRP Sbjct: 1 MAVQLHPNRCSRAFTEQALKTCAKISSSIC-----------VLIDWSPASISHTIFLFRP 60
Query: 61 PSIKTCPFPPVL 73 PSIKTCPFPPVL Sbjct: 61 PSIKTCPFPPVL 61
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7018799.1 | 2.4e-33 | 100.00 | hypothetical protein SDJN02_20672, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6582395.1 | 9.9e-24 | 84.72 | hypothetical protein SDJN03_22397, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
Carg16553 | Carg16553 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Carg16553-RA:1 | Carg16553-RA:1 | exon |
Carg16553-RA:2 | Carg16553-RA:2 | exon |
Carg16553-RA:3 | Carg16553-RA:3 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Carg16553-RA:cds | Carg16553-RA:cds | CDS |
Carg16553-RA:cds | Carg16553-RA:cds_2 | CDS |
Carg16553-RA:cds | Carg16553-RA:cds_3 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Carg16553-RA | Carg16553-RA-protein | polypeptide |
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