Carg16553 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16553
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 13107934 .. 13108318 (+)
RNA-Seq ExpressionCarg16553
SyntenyCarg16553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTACAGTTGCATCCCAACCGCTGTTCCCGCGCTTTCACAGAACAGGCATTGAAAACCTGCGCTAAGATTAGCTCATCAATCTGCGTTTTCCATTCGGATTTCTACGCCTTCCTTTCCGTAGTTCCGTCATAATCGATTCTTCTCCCAACTAATCAGGTTTTGATTGACTGGTCTCCGGCTTCCATTTCCCACACCATTTTCCTTTTCCGGCCACCGTCGATCAAAACCTGCCCATTTCCGCCCGTTCTCGTACGTCTACCTTCCTCAATCTTACGCTCAACCAGGTTTCACTCCCTTTTCTCTTTAATCTCCCTTTTATTTGGAAATCACGCTTTTATTTAAGCTGTGATTGTGAATTTTGTTTGAATCGCAGGCGTAG

mRNA sequence

ATGGCCGTACAGTTGCATCCCAACCGCTGTTCCCGCGCTTTCACAGAACAGGCATTGAAAACCTGCGCTAAGATTAGCTCATCAATCTGCGTTTTCCATTCGGATTTCTACGCCTTCCTTTCCGTTTTGATTGACTGGTCTCCGGCTTCCATTTCCCACACCATTTTCCTTTTCCGGCCACCGTCGATCAAAACCTGCCCATTTCCGCCCGTTCTCGCGTAG

Coding sequence (CDS)

ATGGCCGTACAGTTGCATCCCAACCGCTGTTCCCGCGCTTTCACAGAACAGGCATTGAAAACCTGCGCTAAGATTAGCTCATCAATCTGCGTTTTCCATTCGGATTTCTACGCCTTCCTTTCCGTTTTGATTGACTGGTCTCCGGCTTCCATTTCCCACACCATTTTCCTTTTCCGGCCACCGTCGATCAAAACCTGCCCATTTCCGCCCGTTCTCGCGTAG

Protein sequence

MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRPPSIKTCPFPPVLA
Homology
[Close]
BLAST of Carg16553 vs. NCBI nr
Match: KAG7018799.1 (hypothetical protein SDJN02_20672, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 2.4e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRP 60
          MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRP
Sbjct: 1  MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRP 60

Query: 61 PSIKTCPFPPVLA 74
          PSIKTCPFPPVLA
Sbjct: 61 PSIKTCPFPPVLA 73

[Close]
BLAST of Carg16553 vs. NCBI nr
Match: KAG6582395.1 (hypothetical protein SDJN03_22397, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 9.9e-24
Identity = 61/72 (84.72%), Postives = 61/72 (84.72%), Query Frame = 0 

Query: 1  MAVQLHPNRCSRAFTEQALKTCAKISSSICVFHSDFYAFLSVLIDWSPASISHTIFLFRP 60
          MAVQLHPNRCSRAFTEQALKTCAKISSSIC           VLIDWSPASISHTIFLFRP
Sbjct: 1  MAVQLHPNRCSRAFTEQALKTCAKISSSIC-----------VLIDWSPASISHTIFLFRP 60

Query: 61 PSIKTCPFPPVL 73
          PSIKTCPFPPVL
Sbjct: 61 PSIKTCPFPPVL 61

The following BLAST results are available for this feature:
BLAST of Carg16553 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018799.12.4e-33100.00hypothetical protein SDJN02_20672, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6582395.19.9e-2484.72hypothetical protein SDJN03_22397, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg16553 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16553 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16553 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16553-RACarg16553-RAmRNA