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Carg15891-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTTAAAGAGATGAAATTAGGGTTTTTGGCGCAGCCGTATCTCTCTCGATAGTTTTTCTTCCTCTGGAGCTGCTCTGAGCTTCCCAACTGGTCTAACCATGGCTGTCGGGTAACTCTTCGTCTCCATTTCTTTTGTCACCTCCTTTCCGTTTGTACTCTTTTCACTGATGCTACTGTTTTTCTTCTTATATTTGCAGAAAGAACAAGAGGATTTCGAAAGGAAAGAAGGGAGGCAAGAAGAAGACGTAAGTATTCTGTCTCTTTCCTTTGAATTTTCTCATATCAGATCTAGGTGTCTAATGTTGTCAAGTTTTAGTTTTTCAATTAGTCTGTAATGGTTATTAGTGCTCAATCGTTGTATATATTAATTTGGTTTCGTTCCTCCGGGGATCCTTTAGTGTCGACCCATTTGCCAAGAAGGATTGGTACGATATCAAGGCACCTTCTGTGTTCAATGTCAAGAACGTCGGGAAGACTCTCGTTACTCGCACTCAGGGTACCAAGGTAGATTCGGCACTTTAATCGCTCTCCTTCATTCATACTTTATTAAGTTTTCTCCATCTACGTTTGCCCTAGTTTGCTTTCGTTGCGTGGAAGCATTTTTCTTATTATGGAGAGGTTACTGTAATTTCTGGTATAGAAAGTAGCCCGACACTACAGGCACTTAAAAGGAGTAGGCCCCGTAATGTAGAGTATACTGAAGAAAATATAAATTTACATACTTGAAGTGTTTGCCTAATATTCTAACCAAACAGTTTTTTCTTGCTCGACTGCGTTGATTGCGAAAATGGAATTATTTTATTCAGCTGTTATTTGGTATGGAATCTTCAGTAATATTGAAACTACATTTACTGTGTTAACTCTCAAAGCTCTTTAGGTATATAATTGTGGTTTTTGTGCAAGACCAGTAATTTCTGGTGATGTAGTGGTAGTTGAAGTCACTCGTTTGTAGATTAGGAGATGCATTTATTGTTCTAAAGTATAAATTTTAGTGAAACATGTTTGTACTTGTAGATTTCTGTAGCAATTATTTGTTTTTCAGCTTTGTGCATTTTCTTCTTGTTTGTATCTTTTTAAATACTTATAATTCTTGTTCCAACAGATTGCCTCTGAGGGACTTAAACACCGTGTGTTTGAGGTATCCTTGGCTGACCTTCAGGATGACGAGGAGCACGCCTACCGAAAGATTAGATTGAGAGCCGAAGATGTTCAAGGAAGGAATGTTCTGACTAATTTCTGGGTACGATTGGTTCTTTTATATTTTTGGAATGGATATGAAAATGTTTAAATGGTACTAATTTTTTAGTTTTCTGCAGTAGTGGTATTTTTTTTCCATTTCAAGCAGTCCTTGTGAATTTTTAGAACTCATAAAACTCCATTGTTAAACAGGGAATGAATTTTACTACTGATAAATTGAGGTCATTGGTAAGGAAGTGGCATACGTTGATTGAAGCTCATGTGGATGTTAAGACCACAGACAGCTATACTCTGAGGATGTTCTGCATTGGATTTACCAAGAGACGCCCAAACCAGGTTAAAAGGACCTGTTATGCACAATCCAGTCAGATTAGACAGGTGACTACTGAATACATGTTATCTAATGTCTTAAGAAAGTTTTACTGATGTCTGAAATATCTATGATTAGTTTACTGTGGAAAATGATGAGTTCAGAAATTATGGATGAAAAAATGCGCGGTGTGGATAACTATTTTTCTTAAACAAGGGCGGCATGTATGGAAGCTTTACTTGTTCTATGTGCGTTATATGTGGCTGAGACTTGTTCATTGTCATTGATAATATTCTTTCCAGATTCTCGAAGACTGTTTTCTTTAATAGCTTAGATACAATAAAATCATCTACTAAGAATGGATTTTGTTAATCTTTACTGTGATGATGGTCTATTATTATGTTTTGTTCTACCTGACGTTTGGTACTTGGATCTATTGGTTTTCTTATTCCCATTACAACAAGATCTTGATTTTCTATTATTTTACACTACTCTCTTGTATCAAACATTTAGTTATACAGTATAAACTAAGAGTTGTTCCACATCACTTGAGTTGAACTATTCTCTATGCAGCTTTTGCTATGTTTCTGTTTTCTCACTTGGAATGAAAATATGCTTGTGCATTGAGCCTGGTTTTTAAGGATATGGGAATGAGATCTTCATGATTAACCAGGCAGATCTGTTACTATTTGTAAACTATAGTTTTTTATTGCAGATTCGCCGAAAGATGAGGGAGATCATGGTAAACCAGGCAACGTCTTGTGATCTGAAAGAGTTGGTTCGTAAGTTTATTCCTGAATCAATTGGAAAAGAAATCGAGAAGGCAACATCTAGCATATACCCTCTACAAAATGTTTTCATTCGGAAGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTATATTGCTATTTACCTGCTCATTAAACCTGCTGGTTTCCCTCAATCTTACCTTCCATTTTCACTCCTTAATTGAAAGATTCATGATCAAGTGTCACTTGAGGTCGTGAAACTTGTTGCAATAGTTTTTATCATTATGACCAATCCTTTCTTTTACTATGTCTAGGTTCATGGCGATTATTCAGAAGATGTTGGCGTGAAGGTAGATAGGCCTGCCGATGAAGTTGTCGAGGAGGCCACCGAAGTTGTTGGGGCTTGAAAATGGATTCTTGAATCAACTTTCTCATATTTACGAATGAACTGTGGCTTTTTGTTTTAGTTATAGTTGTATTACGCTTTCTGCTAAGTTGAGAAATCAGAGATAATCAGCGATTTTGACTATGAAAAATACTTGCTGCTTTTAAGTTGAGTATTATTCCTTGGAACTATTTG TATTTAAAGAGATGAAATTAGGGTTTTTGGCGCAGCCGTATCTCTCTCGATAGTTTTTCTTCCTCTGGAGCTGCTCTGAGCTTCCCAACTGGTCTAACCATGGCTGTCGGAAAGAACAAGAGGATTTCGAAAGGAAAGAAGGGAGGCAAGAAGAAGACTGTCGACCCATTTGCCAAGAAGGATTGGTACGATATCAAGGCACCTTCTGTGTTCAATGTCAAGAACGTCGGGAAGACTCTCGTTACTCGCACTCAGGGTACCAAGATTGCCTCTGAGGGACTTAAACACCGTGTGTTTGAGGTATCCTTGGCTGACCTTCAGGATGACGAGGAGCACGCCTACCGAAAGATTAGATTGAGAGCCGAAGATGTTCAAGGAAGGAATGTTCTGACTAATTTCTGGGGAATGAATTTTACTACTGATAAATTGAGGTCATTGGTAAGGAAGTGGCATACGTTGATTGAAGCTCATGTGGATGTTAAGACCACAGACAGCTATACTCTGAGGATGTTCTGCATTGGATTTACCAAGAGACGCCCAAACCAGGTTAAAAGGACCTGTTATGCACAATCCAGTCAGATTAGACAGATTCGCCGAAAGATGAGGGAGATCATGGTAAACCAGGCAACGTCTTGTGATCTGAAAGAGTTGGTTCGTAAGTTTATTCCTGAATCAATTGGAAAAGAAATCGAGAAGGCAACATCTAGCATATACCCTCTACAAAATGTTTTCATTCGGAAGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGGCGATTATTCAGAAGATGTTGGCGTGAAGGTAGATAGGCCTGCCGATGAAGTTGTCGAGGAGGCCACCGAAGTTGTTGGGGCTTGAAAATGGATTCTTGAATCAACTTTCTCATATTTACGAATGAACTGTGGCTTTTTGTTTTAGTTATAGTTGTATTACGCTTTCTGCTAAGTTGAGAAATCAGAGATAATCAGCGATTTTGACTATGAAAAATACTTGCTGCTTTTAAGTTGAGTATTATTCCTTGGAACTATTTG ATGGCTGTCGGAAAGAACAAGAGGATTTCGAAAGGAAAGAAGGGAGGCAAGAAGAAGACTGTCGACCCATTTGCCAAGAAGGATTGGTACGATATCAAGGCACCTTCTGTGTTCAATGTCAAGAACGTCGGGAAGACTCTCGTTACTCGCACTCAGGGTACCAAGATTGCCTCTGAGGGACTTAAACACCGTGTGTTTGAGGTATCCTTGGCTGACCTTCAGGATGACGAGGAGCACGCCTACCGAAAGATTAGATTGAGAGCCGAAGATGTTCAAGGAAGGAATGTTCTGACTAATTTCTGGGGAATGAATTTTACTACTGATAAATTGAGGTCATTGGTAAGGAAGTGGCATACGTTGATTGAAGCTCATGTGGATGTTAAGACCACAGACAGCTATACTCTGAGGATGTTCTGCATTGGATTTACCAAGAGACGCCCAAACCAGGTTAAAAGGACCTGTTATGCACAATCCAGTCAGATTAGACAGATTCGCCGAAAGATGAGGGAGATCATGGTAAACCAGGCAACGTCTTGTGATCTGAAAGAGTTGGTTCGTAAGTTTATTCCTGAATCAATTGGAAAAGAAATCGAGAAGGCAACATCTAGCATATACCCTCTACAAAATGTTTTCATTCGGAAGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGGCGATTATTCAGAAGATGTTGGCGTGAAGGTAGATAGGCCTGCCGATGAAGTTGTCGAGGAGGCCACCGAAGTTGTTGGGGCTTGA MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFNVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEVVEEATEVVGA Homology
BLAST of Carg15891-RA vs. NCBI nr
Match: XP_023000239.1 (40S ribosomal protein S3a-like [Cucurbita maxima] >XP_023514634.1 40S ribosomal protein S3a-like [Cucurbita pepo subsp. pepo] >KAG6593879.1 hypothetical protein SDJN03_13355, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026224.1 hypothetical protein SDJN02_12723 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 511.9 bits (1317), Expect = 3.2e-141 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of Carg15891-RA vs. NCBI nr
Match: XP_022930511.1 (40S ribosomal protein S3a-like [Cucurbita moschata]) HSP 1 Score: 509.2 bits (1310), Expect = 2.1e-140 Identity = 259/260 (99.62%), Postives = 259/260 (99.62%), Query Frame = 0
BLAST of Carg15891-RA vs. NCBI nr
Match: XP_023006746.1 (40S ribosomal protein S3a-like [Cucurbita maxima] >XP_023548740.1 40S ribosomal protein S3a-like [Cucurbita pepo subsp. pepo] >KAG6574967.1 hypothetical protein SDJN03_25606, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013536.1 hypothetical protein SDJN02_23702 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 507.7 bits (1306), Expect = 6.0e-140 Identity = 258/260 (99.23%), Postives = 259/260 (99.62%), Query Frame = 0
BLAST of Carg15891-RA vs. NCBI nr
Match: XP_022959011.1 (40S ribosomal protein S3a-like [Cucurbita moschata]) HSP 1 Score: 505.4 bits (1300), Expect = 3.0e-139 Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0
BLAST of Carg15891-RA vs. NCBI nr
Match: XP_022138569.1 (40S ribosomal protein S3a [Momordica charantia]) HSP 1 Score: 504.2 bits (1297), Expect = 6.7e-139 Identity = 256/260 (98.46%), Postives = 258/260 (99.23%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy Swiss-Prot
Match: Q8GTE3 (40S ribosomal protein S3a OS=Cicer arietinum OX=3827 PE=2 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 5.0e-129 Identity = 235/261 (90.04%), Postives = 248/261 (95.02%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy Swiss-Prot
Match: P33444 (40S ribosomal protein S3a OS=Catharanthus roseus OX=4058 GN=RPS3A PE=2 SV=4) HSP 1 Score: 459.5 bits (1181), Expect = 2.5e-128 Identity = 229/261 (87.74%), Postives = 249/261 (95.40%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy Swiss-Prot
Match: P49198 (40S ribosomal protein S3a OS=Helianthus annuus OX=4232 GN=RPS3A PE=2 SV=2) HSP 1 Score: 458.4 bits (1178), Expect = 5.5e-128 Identity = 227/260 (87.31%), Postives = 248/260 (95.38%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy Swiss-Prot
Match: A5B4K1 (40S ribosomal protein S3a-1 OS=Vitis vinifera OX=29760 GN=GSVIVT00020038001 PE=3 SV=1) HSP 1 Score: 455.7 bits (1171), Expect = 3.6e-127 Identity = 230/261 (88.12%), Postives = 245/261 (93.87%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy Swiss-Prot
Match: Q285L8 (40S ribosomal protein S3a OS=Nicotiana tabacum OX=4097 GN=cyc07 PE=2 SV=1) HSP 1 Score: 453.4 bits (1165), Expect = 1.8e-126 Identity = 229/261 (87.74%), Postives = 246/261 (94.25%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy TrEMBL
Match: A0A6J1KJB0 (40S ribosomal protein S3a OS=Cucurbita maxima OX=3661 GN=LOC111494520 PE=3 SV=1) HSP 1 Score: 511.9 bits (1317), Expect = 1.5e-141 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy TrEMBL
Match: A0A6J1ER42 (40S ribosomal protein S3a OS=Cucurbita moschata OX=3662 GN=LOC111436943 PE=3 SV=1) HSP 1 Score: 509.2 bits (1310), Expect = 1.0e-140 Identity = 259/260 (99.62%), Postives = 259/260 (99.62%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy TrEMBL
Match: A0A6J1KYM2 (40S ribosomal protein S3a OS=Cucurbita maxima OX=3661 GN=LOC111499385 PE=3 SV=1) HSP 1 Score: 507.7 bits (1306), Expect = 2.9e-140 Identity = 258/260 (99.23%), Postives = 259/260 (99.62%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy TrEMBL
Match: A0A6J1H3P8 (40S ribosomal protein S3a OS=Cucurbita moschata OX=3662 GN=LOC111460131 PE=3 SV=1) HSP 1 Score: 505.4 bits (1300), Expect = 1.4e-139 Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0
BLAST of Carg15891-RA vs. ExPASy TrEMBL
Match: A0A6J1CAG4 (40S ribosomal protein S3a OS=Momordica charantia OX=3673 GN=LOC111009696 PE=3 SV=1) HSP 1 Score: 504.2 bits (1297), Expect = 3.2e-139 Identity = 256/260 (98.46%), Postives = 258/260 (99.23%), Query Frame = 0
BLAST of Carg15891-RA vs. TAIR 10
Match: AT3G04840.1 (Ribosomal protein S3Ae ) HSP 1 Score: 446.0 bits (1146), Expect = 2.0e-125 Identity = 225/262 (85.88%), Postives = 246/262 (93.89%), Query Frame = 0
BLAST of Carg15891-RA vs. TAIR 10
Match: AT4G34670.1 (Ribosomal protein S3Ae ) HSP 1 Score: 445.3 bits (1144), Expect = 3.4e-125 Identity = 226/262 (86.26%), Postives = 244/262 (93.13%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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