Carg15542-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15542-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 10714657 .. 10715614 (-)
Sequence length231
RNA-Seq ExpressionCarg15542-RA
SyntenyCarg15542-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTGTTGAGGTTTTTCAGGGTTTGTGATTCAGCTTCCACATTAAAGTTTATGTGCAAATGCAATATGCAAGGAAGGTGAGAAAGGGGGACTTGGATTTGGCAGATGTAAATGTTGATTTGGGTGTGTGTTCTAATTGTATGAGTGAGTTTTTTTCTCCAATTCTGATTTTTCTATCTCATTTGTGGAATCAATTAGCCCATTGTGTAATGCATTTGTCAAATTAGTTTGCTAAATTAGCAGCTTATCTTCTTATTCCTTTGTGTTTTTGAGTTCACGATTGCAGGTCGAGATCGAACCATCGAGTTCTCAAATAGACATTGGTGCCGTATCCATTGAGCTATGCTTAAATCGACAAGCCAGCATCTATGGTTAGTTCTACTTAGCTGCCTTCCATTCTCGCTCTATATAGGAAACTTCTTCAACTGTAAAGGAAAAGGAATCCGATCCCGGCTTTGCTTGAAGCATGCGAAGGAACGAGGTTTGTCTTTGAAGCAAGTTCATTCAGTGCATAAATCGTTTGCGAGTGTAGTTGACTAGTAGTCTCATTAGGCTAAATGCTCTGTATCCTTTGTGGTAATCATTCTAATTCCCTTGCTAGTGGAACTATGACTCCTGCTCGGTAAACTATGCTCGCTGCCTATCGGGTCTCGTCTCAAGCTGTGGTATGGACGGAGTTTCCTGCCTTCGTTACAAATCCAGACAAAAAAGGGTAGCTAGTGCCCTTAATTGAATGACTTGAAACACTTATTTGTAAGAAGTACTATTGAATTGGTTGTAACTACACCTACTCTTAGTCTAGTATTGACCTCGGCTTTTTAGGGATTCCCTAAAACCTGAGCGTCTTATATTTTTTACTCGGGCCTTAGTTATTAATTGATGTTTTAAATAGGTGAGCTCGTAGAGGCAATCAAAGCCAACCCTTTAGACCTACAATATTGCAATATGGAATGA

mRNA sequence

ATGGGATTTGTTGAGGTCGAGATCGAACCATCGAGTTCTCAAATAGACATTGGTGCCGTATCCATTGAGCTATGCTTAAATCGACAAGCCAGCATCTATGGAAACTTCTTCAACTGTAAAGGAAAAGGAATCCGATCCCGGCTTTGCTTGAAGCATGCGAAGGAACGAGGTGAGCTCGTAGAGGCAATCAAAGCCAACCCTTTAGACCTACAATATTGCAATATGGAATGA

Coding sequence (CDS)

ATGGGATTTGTTGAGGTCGAGATCGAACCATCGAGTTCTCAAATAGACATTGGTGCCGTATCCATTGAGCTATGCTTAAATCGACAAGCCAGCATCTATGGAAACTTCTTCAACTGTAAAGGAAAAGGAATCCGATCCCGGCTTTGCTTGAAGCATGCGAAGGAACGAGGTGAGCTCGTAGAGGCAATCAAAGCCAACCCTTTAGACCTACAATATTGCAATATGGAATGA

Protein sequence

MGFVEVEIEPSSSQIDIGAVSIELCLNRQASIYGNFFNCKGKGIRSRLCLKHAKERGELVEAIKANPLDLQYCNME
Homology
[Close]
BLAST of Carg15542-RA vs. NCBI nr
Match: KAG7022645.1 (hypothetical protein SDJN02_16379, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 4.5e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MGFVEVEIEPSSSQIDIGAVSIELCLNRQASIYGNFFNCKGKGIRSRLCLKHAKERGELV 60
          MGFVEVEIEPSSSQIDIGAVSIELCLNRQASIYGNFFNCKGKGIRSRLCLKHAKERGELV
Sbjct: 1  MGFVEVEIEPSSSQIDIGAVSIELCLNRQASIYGNFFNCKGKGIRSRLCLKHAKERGELV 60

Query: 61 EAIKANPLDLQYCNME 77
          EAIKANPLDLQYCNME
Sbjct: 61 EAIKANPLDLQYCNME 76

The following BLAST results are available for this feature:
BLAST of Carg15542-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022645.14.5e-35100.00hypothetical protein SDJN02_16379, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15542-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15542-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15542-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg15542Carg15542gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15542-RA:1Carg15542-RA:1exon
Carg15542-RA:2Carg15542-RA:2exon
Carg15542-RA:3Carg15542-RA:3exon
Carg15542-RA:4Carg15542-RA:4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15542-RA:cdsCarg15542-RA:cds_4CDS
Carg15542-RA:cdsCarg15542-RA:cds_3CDS
Carg15542-RA:cdsCarg15542-RA:cds_2CDS
Carg15542-RA:cdsCarg15542-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg15542-RACarg15542-RA-proteinpolypeptide