Carg15542 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15542
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 10714657 .. 10715614 (-)
RNA-Seq ExpressionCarg15542
SyntenyCarg15542
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTGTTGAGGTTTTTCAGGGTTTGTGATTCAGCTTCCACATTAAAGTTTATGTGCAAATGCAATATGCAAGGAAGGTGAGAAAGGGGGACTTGGATTTGGCAGATGTAAATGTTGATTTGGGTGTGTGTTCTAATTGTATGAGTGAGTTTTTTTCTCCAATTCTGATTTTTCTATCTCATTTGTGGAATCAATTAGCCCATTGTGTAATGCATTTGTCAAATTAGTTTGCTAAATTAGCAGCTTATCTTCTTATTCCTTTGTGTTTTTGAGTTCACGATTGCAGGTCGAGATCGAACCATCGAGTTCTCAAATAGACATTGGTGCCGTATCCATTGAGCTATGCTTAAATCGACAAGCCAGCATCTATGGTTAGTTCTACTTAGCTGCCTTCCATTCTCGCTCTATATAGGAAACTTCTTCAACTGTAAAGGAAAAGGAATCCGATCCCGGCTTTGCTTGAAGCATGCGAAGGAACGAGGTTTGTCTTTGAAGCAAGTTCATTCAGTGCATAAATCGTTTGCGAGTGTAGTTGACTAGTAGTCTCATTAGGCTAAATGCTCTGTATCCTTTGTGGTAATCATTCTAATTCCCTTGCTAGTGGAACTATGACTCCTGCTCGGTAAACTATGCTCGCTGCCTATCGGGTCTCGTCTCAAGCTGTGGTATGGACGGAGTTTCCTGCCTTCGTTACAAATCCAGACAAAAAAGGGTAGCTAGTGCCCTTAATTGAATGACTTGAAACACTTATTTGTAAGAAGTACTATTGAATTGGTTGTAACTACACCTACTCTTAGTCTAGTATTGACCTCGGCTTTTTAGGGATTCCCTAAAACCTGAGCGTCTTATATTTTTTACTCGGGCCTTAGTTATTAATTGATGTTTTAAATAGGTGAGCTCGTAGAGGCAATCAAAGCCAACCCTTTAGACCTACAATATTGCAATATGGAATGA

mRNA sequence

ATGGGATTTGTTGAGGTCGAGATCGAACCATCGAGTTCTCAAATAGACATTGGTGCCGTATCCATTGAGCTATGCTTAAATCGACAAGCCAGCATCTATGGAAACTTCTTCAACTGTAAAGGAAAAGGAATCCGATCCCGGCTTTGCTTGAAGCATGCGAAGGAACGAGGTGAGCTCGTAGAGGCAATCAAAGCCAACCCTTTAGACCTACAATATTGCAATATGGAATGA

Coding sequence (CDS)

ATGGGATTTGTTGAGGTCGAGATCGAACCATCGAGTTCTCAAATAGACATTGGTGCCGTATCCATTGAGCTATGCTTAAATCGACAAGCCAGCATCTATGGAAACTTCTTCAACTGTAAAGGAAAAGGAATCCGATCCCGGCTTTGCTTGAAGCATGCGAAGGAACGAGGTGAGCTCGTAGAGGCAATCAAAGCCAACCCTTTAGACCTACAATATTGCAATATGGAATGA

Protein sequence

MGFVEVEIEPSSSQIDIGAVSIELCLNRQASIYGNFFNCKGKGIRSRLCLKHAKERGELVEAIKANPLDLQYCNME
Homology
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BLAST of Carg15542 vs. NCBI nr
Match: KAG7022645.1 (hypothetical protein SDJN02_16379, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 4.5e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MGFVEVEIEPSSSQIDIGAVSIELCLNRQASIYGNFFNCKGKGIRSRLCLKHAKERGELV 60
          MGFVEVEIEPSSSQIDIGAVSIELCLNRQASIYGNFFNCKGKGIRSRLCLKHAKERGELV
Sbjct: 1  MGFVEVEIEPSSSQIDIGAVSIELCLNRQASIYGNFFNCKGKGIRSRLCLKHAKERGELV 60

Query: 61 EAIKANPLDLQYCNME 77
          EAIKANPLDLQYCNME
Sbjct: 61 EAIKANPLDLQYCNME 76

The following BLAST results are available for this feature:
BLAST of Carg15542 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022645.14.5e-35100.00hypothetical protein SDJN02_16379, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15542 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15542 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15542 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15542-RACarg15542-RAmRNA