Carg13962-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13962-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transmembrane protein, putative
Location	Carg_Chr08: 4222075 .. 4222281 (+)
Sequence length	207
RNA-Seq Expression	Carg13962-RA
Synteny	Carg13962-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAAAACCAACTGTTGCGTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCGATGAAAGCTGCAGGTGGTGCAAAGATAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGAGGATCAAAACAGGAGCAGAAGGATGATTCTAAACAACACTCTCCACAATGA

mRNA sequence

ATGGCAGTAAAACCAACTGTTGCGTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCGATGAAAGCTGCAGGTGGTGCAAAGATAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGAGGATCAAAACAGGAGCAGAAGGATGATTCTAAACAACACTCTCCACAATGA

Coding sequence (CDS)

ATGGCAGTAAAACCAACTGTTGCGTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCGATGAAAGCTGCAGGTGGTGCAAAGATAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGAGGATCAAAACAGGAGCAGAAGGATGATTCTAAACAACACTCTCCACAATGA

Protein sequence

MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKDDSKQHSPQ

Homology

[Close]

BLAST of Carg13962-RA vs. NCBI nr
Match: KAG7025867.1 (hypothetical protein SDJN02_12365, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60

Query: 61 DSKQHSPQ 69
          DSKQHSPQ
Sbjct: 61 DSKQHSPQ 68

[Close]

BLAST of Carg13962-RA vs. NCBI nr
Match: KAG6593524.1 (hypothetical protein SDJN03_13000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD
Sbjct: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84

Query: 61 DSKQHSPQ 69
          DSKQHSPQ
Sbjct: 85 DSKQHSPQ 92

[Close]

BLAST of Carg13962-RA vs. NCBI nr
Match: XP_038900241.1 (uncharacterized protein LOC120087330 [Benincasa hispida] >XP_038900242.1 uncharacterized protein LOC120087330 [Benincasa hispida] >XP_038900243.1 uncharacterized protein LOC120087330 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 8.4e-17
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALA GSKQ+QK+
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GSKQDQKE 60

Query: 61 DSKQHSPQ 69
          DS +HSP+
Sbjct: 61 DSNKHSPK 67

[Close]

BLAST of Carg13962-RA vs. NCBI nr
Match: KAA0059427.1 (hypothetical protein E6C27_scaffold242G001540 [Cucumis melo var. makuwa] >TYK03898.1 hypothetical protein E5676_scaffold347G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 4.2e-16
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALA G+KQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GTKQDQKD 60

Query: 61 DSKQHSPQ 69
          DSK HSP+
Sbjct: 61 DSK-HSPK 66

[Close]

BLAST of Carg13962-RA vs. NCBI nr
Match: KAE8646513.1 (hypothetical protein Csa_016818 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.2e-16
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALA G+KQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GTKQDQKD 60

Query: 61 DSKQHSPQ 69
          DSK HSP+
Sbjct: 61 DSK-HSPK 66

[Close]

BLAST of Carg13962-RA vs. ExPASy TrEMBL
Match: A0A5A7UXR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00940 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALA G+KQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GTKQDQKD 60

Query: 61 DSKQHSPQ 69
          DSK HSP+
Sbjct: 61 DSK-HSPK 66

[Close]

BLAST of Carg13962-RA vs. ExPASy TrEMBL
Match: E5GCB3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-16
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MAVKPTVALRAVLVGGIAAFAK+AGAMKAAGGAK+GAATAAMTAAATAALA G+KQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKLAGAMKAAGGAKLGAATAAMTAAATAALA-GTKQDQKD 60

Query: 61 DSKQHSPQ 69
          DSK HSP+
Sbjct: 61 DSK-HSPK 66

[Close]

BLAST of Carg13962-RA vs. ExPASy TrEMBL
Match: A0A6J1JXL7 (uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGG K+GAATAAMTAAATAALA GSKQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA-GSKQDQKD 60

Query: 61 DSKQHSPQ 69
          DSK H P+
Sbjct: 61 DSK-HPPK 66

[Close]

BLAST of Carg13962-RA vs. ExPASy TrEMBL
Match: A0A6J1CPT9 (uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013620 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          M VKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALA GSKQ+QKD
Sbjct: 1  MEVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GSKQDQKD 60

Query: 61 DSKQHSPQ 69
          DSK H P+
Sbjct: 61 DSK-HPPK 66

[Close]

BLAST of Carg13962-RA vs. ExPASy TrEMBL
Match: A0A6J1GSG6 (uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC111456569 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG K+GAATAAMTAAATAALA GSKQ+QKD
Sbjct: 1  MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA-GSKQDQKD 60

Query: 61 DSKQHSPQ 69
          DSK H P+
Sbjct: 61 DSK-HPPK 66

[Close]

BLAST of Carg13962-RA vs. TAIR 10
Match: AT3G13845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-15
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60
          M+VKPTVALR +LVGG+A FAK+A AMKAAGG K+GAA  AMT AATAA++GGSKQ+QK 
Sbjct: 1  MSVKPTVALRGILVGGVAIFAKVAAAMKAAGGVKLGAAATAMTVAATAAVSGGSKQDQKQ 60

Query: 61 DSKQHSP 68
          D+ +  P
Sbjct: 61 DASKAPP 67

The following BLAST results are available for this feature:

BLAST of Carg13962-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025867.1	2.5e-21	100.00	hypothetical protein SDJN02_12365, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6593524.1	2.5e-21	100.00	hypothetical protein SDJN03_13000, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038900241.1	8.4e-17	89.71	uncharacterized protein LOC120087330 [Benincasa hispida] >XP_038900242.1 unchara...	[more]
KAA0059427.1	4.2e-16	91.18	hypothetical protein E6C27_scaffold242G001540 [Cucumis melo var. makuwa] >TYK038...	[more]
KAE8646513.1	4.2e-16	91.18	hypothetical protein Csa_016818 [Cucumis sativus]	[more]

BLAST of Carg13962-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13962-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXR8	2.0e-16	91.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB3	3.4e-16	89.71	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1JXL7	1.0e-15	89.71	uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760...	[more]
A0A6J1CPT9	1.3e-15	89.71	uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1GSG6	1.3e-15	88.24	uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC1114565...	[more]

BLAST of Carg13962-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13845.1	2.2e-15	68.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36755	PROTEIN, PUTATIVE-RELATED	coord: 1..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13962	Carg13962	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13962-RA:1	Carg13962-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13962-RA:cds	Carg13962-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13962-RA	Carg13962-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane