Carg12263-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12263-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Helicase ATP-binding domain-containing protein
Location	Carg_Chr11: 2981803 .. 2983986 (+)
Sequence length	873
RNA-Seq Expression	Carg12263-RA
Synteny	Carg12263-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATTATCATTTGGATTGAGGTAAATGCCAATTGTGCAGTTGTTGACTTAGGAGCAGGACTGGATTGGCTTTGTTGACCTAGAGTTAGCGCTGGTTAGGGTTCGTGACGAAGGCGGTGGTTTAGTCTACGGCTATTTGGCTGTGGCTTCTTCAATTTTGGTTGCGAGCCGTGAACCACCTGATCACGGAGTAGGCGATGGCGATCAAGAAGTTAGCTAGAGTTTTGATGAAATCTCGGGAAGATGGCTTGTCTCTACCCACTCGGGATGATCCATCCATTGACGATTCCCGTCCCATCGACAGCCAAGGTAATCAATCAATTCTCTCTGAAGTTTCTCTTCTAGTAGAAATCTTTACTGGATTCATTCTTTGAACTAATTTCTCATACTTCTTTCTTTTTGTTGTACTTTTGCCCTAATTCGGTGTTTGATTGACAGCGCAAGAGGAGATGGTTCGTTCCTTCGAAAGGGCAAATGATCAACAGAGTCTTTTATGGAGGGTATCGTTTGACTGTATATTCATCTACGGATTTTTCCTAATTTTTCTGTATTCGAAGAAAATTTTGGATTCTCGTGTCTGATTGTTTTCTTCTCTGTGCCTGACTGTTCATCAGACTGTGTTTGCGGCATTTCTTTTTTGCTTCGCGATTTTCCTTCTTTACTCGATCATTCAGCAGGTTTCATCTCCATGGGAACTGGTATGCTACTTTCTCTGAGAATCTTATCCTGCCCTGTACTGTTCCTCTTCAGACGGTGTTCATATTTTGCAGTAGTTTGAAAGAACTTAACTCCAGTTTAATTGTTCTACTTCTATATGCTTTAGTGACGGACACATTACTTGCAAAGGATACATTAAACTTATGGAGTTTGCATTATACTGATGTTTCTTTTTTCTCTTCTGCAGCGTTATCATGCTTACTTTATGGAGGATGTTAGCTCATGGATGATCATAGCTGCAGGTTCTTTTTTACAAATTTCTCCTTTATTTTACACTCATTATTGCATGTTTGATTCTCACTCCATCAATTTGCTTCAAATGTTGAAGATAATTTCACGGCGAAGTTTCTTTTATTTTTTAAAACCATAACATTTCTTGAACAAAATGGAAACACAAAAAAGCCCCCCCCCCCTCCCCCCCCCCCATATCCAAATATTGCAATGGCCAAGTTCACTTCCGTGTTCTATTGAGCTGTAGTCATGTTTTTAAGTTATATACTGTGATGCTCTGTTGAGATCTTTGCTTGCTAATATCAACAATTGAAATTCTACAGATTGGGTTGCTATTTTAGCATGTTCATTTTCGATCATTGGGATTGTTAGCAAGTCAAATTACCACAGGCGATGGCTATGGTGCTCGTTCTTCATTGGCTTCCTACTCTCAGTTTTCTGGTTATACTTTATGATTAGGTATGGTGGGAAAACTCTCGAATCATTTTTTTTCCCCCCAAAGTTATGCTCCTGAATGAAGATTTACATACTGACCTATAGTGTATGTCTGACTTGTCTATTAAAATCTCTTATTTACCTCGTTTGTTGATGGATGCAAATGGCCTTGTTTTTGGTTCTTTTGCCCATTTTCCTAGAGAGCAGTATGTTGTGAATGGCGAATTGTACCAACTTCGTATGTCTAGTCCATGTATGTAAGAAGAAAATTTCATTGCTGAAATGTACAGTAGCAGGAAAGAGAGGTTTTCACTACCATGGCAGGTTGAGATACAACCTTACACAAGGGTATTCGACTTGTAATAACAGAAGAGAGGATAGAATAAGCAAAGTACAGCGTAGTCATAATGCACAAATAGTAGTAGTCATATAGTGCCTCTTCCAACGAATTCTTTCTTTTTGATCATTTTTCATACCTGTTGGTATGCCCTTGTAAGGGTGATCTTAAGCTTGTTATTTTGATGATAATAAATTTACAGTTTATAATGTTTGTATGGATTGCAGTTTGCCTAGGTTTCGATGGGATGTTATCTGGCGTCCTTTTGGTCCTCTCAGGTAGTTTTTGAAAAATGAAAAAGATTACGACTTTGACATGAACTTTCGAACTCACTATGTGCTCATACGCTTCTGTTGATTGCAGCGGGGCTGGAATCTGTTTGTATGTGGATCATTTGCTGGCCGAATCATCCGAGGAAATACGAAAACTTAGAGGCTATATGTATTCTTATAAAGCTAACTGA

mRNA sequence

TATTATTATCATTTGGATTGAGGTAAATGCCAATTGTGCAGTTGTTGACTTAGGAGCAGGACTGGATTGGCTTTGTTGACCTAGAGTTAGCGCTGGTTAGGGTTCGTGACGAAGGCGGTGGTTTAGTCTACGGCTATTTGGCTGTGGCTTCTTCAATTTTGGTTGCGAGCCGTGAACCACCTGATCACGGAGTAGGCGATGGCGATCAAGAAGTTAGCTAGAGTTTTGATGAAATCTCGGGAAGATGGCTTGTCTCTACCCACTCGGGATGATCCATCCATTGACGATTCCCGTCCCATCGACAGCCAAGCGCAAGAGGAGATGGTTCGTTCCTTCGAAAGGGCAAATGATCAACAGAGTCTTTTATGGAGGGTATCGTTTGACTGTATATTCATCTACGGATTTTTCCTAATTTTTCTGTATTCGAAGAAAATTTTGGATTCTCGTACTGTGTTTGCGGCATTTCTTTTTTGCTTCGCGATTTTCCTTCTTTACTCGATCATTCAGCAGGTTTCATCTCCATGGGAACTGCGTTATCATGCTTACTTTATGGAGGATGTTAGCTCATGGATGATCATAGCTGCAGATTGGGTTGCTATTTTAGCATGTTCATTTTCGATCATTGGGATTGTTAGCAAGTCAAATTACCACAGGCGATGGCTATGGTGCTCGTTCTTCATTGGCTTCCTACTCTCAGTTTTCTGGTTATACTTTATGATTAGTTTGCCTAGGTTTCGATGGGATGTTATCTGGCGTCCTTTTGGTCCTCTCAGCGGGGCTGGAATCTGTTTGTATGTGGATCATTTGCTGGCCGAATCATCCGAGGAAATACGAAAACTTAGAGGCTATATGTATTCTTATAAAGCTAACTGA

Coding sequence (CDS)

ATGGCGATCAAGAAGTTAGCTAGAGTTTTGATGAAATCTCGGGAAGATGGCTTGTCTCTACCCACTCGGGATGATCCATCCATTGACGATTCCCGTCCCATCGACAGCCAAGCGCAAGAGGAGATGGTTCGTTCCTTCGAAAGGGCAAATGATCAACAGAGTCTTTTATGGAGGGTATCGTTTGACTGTATATTCATCTACGGATTTTTCCTAATTTTTCTGTATTCGAAGAAAATTTTGGATTCTCGTACTGTGTTTGCGGCATTTCTTTTTTGCTTCGCGATTTTCCTTCTTTACTCGATCATTCAGCAGGTTTCATCTCCATGGGAACTGCGTTATCATGCTTACTTTATGGAGGATGTTAGCTCATGGATGATCATAGCTGCAGATTGGGTTGCTATTTTAGCATGTTCATTTTCGATCATTGGGATTGTTAGCAAGTCAAATTACCACAGGCGATGGCTATGGTGCTCGTTCTTCATTGGCTTCCTACTCTCAGTTTTCTGGTTATACTTTATGATTAGTTTGCCTAGGTTTCGATGGGATGTTATCTGGCGTCCTTTTGGTCCTCTCAGCGGGGCTGGAATCTGTTTGTATGTGGATCATTTGCTGGCCGAATCATCCGAGGAAATACGAAAACTTAGAGGCTATATGTATTCTTATAAAGCTAACTGA

Protein sequence

MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVSFDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMEDVSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFRWDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN

Homology

[Close]

BLAST of Carg12263-RA vs. NCBI nr
Match: KAG7021915.1 (hypothetical protein SDJN02_15643 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 449.5 bits (1155), Expect = 1.7e-122
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS
Sbjct: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
           FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED
Sbjct: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR
Sbjct: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 224

[Close]

BLAST of Carg12263-RA vs. NCBI nr
Match: KAG6588018.1 (hypothetical protein SDJN03_16583, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387.9 bits (995), Expect = 6.0e-104
Identity = 199/224 (88.84%), Postives = 199/224 (88.84%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW   
Sbjct: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR
Sbjct: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. NCBI nr
Match: XP_022927992.1 (uncharacterized protein LOC111434892 [Cucurbita moschata])

HSP 1 Score: 386.0 bits (990), Expect = 2.3e-103
Identity = 198/224 (88.39%), Postives = 198/224 (88.39%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW   
Sbjct: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFAAFLFCFAIFLLYSII QVSSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAAFLFCFAIFLLYSIIHQVSSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR
Sbjct: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. NCBI nr
Match: XP_023002535.1 (uncharacterized protein LOC111496345 [Cucurbita maxima])

HSP 1 Score: 384.4 bits (986), Expect = 6.6e-103
Identity = 197/224 (87.95%), Postives = 198/224 (88.39%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW   
Sbjct: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFAAFLFCFA+FLLYSIIQQVSSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAAFLFCFAVFLLYSIIQQVSSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR
Sbjct: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIWRPFG LSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWRPFGTLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. NCBI nr
Match: XP_023531869.1 (uncharacterized protein LOC111794002 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 7.3e-102
Identity = 196/224 (87.50%), Postives = 197/224 (87.95%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERA+DQQSLLW   
Sbjct: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERAHDQQSLLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFAAFLFCFAIFLLYSII QVSSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAAFLFCFAIFLLYSIIHQVSSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR
Sbjct: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIWRPFG LSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWRPFGTLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. ExPASy TrEMBL
Match: A0A6J1EIP3 (uncharacterized protein LOC111434892 OS=Cucurbita moschata OX=3662 GN=LOC111434892 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.1e-103
Identity = 198/224 (88.39%), Postives = 198/224 (88.39%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW   
Sbjct: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFAAFLFCFAIFLLYSII QVSSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAAFLFCFAIFLLYSIIHQVSSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR
Sbjct: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. ExPASy TrEMBL
Match: A0A6J1KP79 (uncharacterized protein LOC111496345 OS=Cucurbita maxima OX=3661 GN=LOC111496345 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.2e-103
Identity = 197/224 (87.95%), Postives = 198/224 (88.39%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW   
Sbjct: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFAAFLFCFA+FLLYSIIQQVSSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAAFLFCFAVFLLYSIIQQVSSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR
Sbjct: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIWRPFG LSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWRPFGTLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. ExPASy TrEMBL
Match: A0A5D3CE29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002660 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.4e-93
Identity = 176/224 (78.57%), Postives = 188/224 (83.93%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLAR+LMKSR+D +SLPTRDDPS DD RPID+Q QEEMVRSFERANDQQSLLW   
Sbjct: 1   MAIKKLARILMKSRDDEVSLPTRDDPSFDDYRPIDTQVQEEMVRSFERANDQQSLLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFA FLFC+A FLLYSI+QQ+SSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAVFLFCYAGFLLYSILQQISSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           V SWMIIAADWVAILAC+FSI+GIVSKS++HRRWLWCSFFIG LLSVFW YFM+SLPRFR
Sbjct: 121 VDSWMIIAADWVAILACTFSIVGIVSKSSHHRRWLWCSFFIGILLSVFWFYFMMSLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIW PFGPLSGAGICLYVDHLL ESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWLPFGPLSGAGICLYVDHLLTESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. ExPASy TrEMBL
Match: A0A1S3BQS5 (uncharacterized protein LOC103492288 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492288 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.4e-93
Identity = 176/224 (78.57%), Postives = 188/224 (83.93%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLAR+LMKSR+D +SLPTRDDPS DD RPID+Q QEEMVRSFERANDQQSLLW   
Sbjct: 1   MAIKKLARILMKSRDDEVSLPTRDDPSFDDYRPIDTQVQEEMVRSFERANDQQSLLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFA FLFC+A FLLYSI+QQ+SSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAVFLFCYAGFLLYSILQQISSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           V SWMIIAADWVAILAC+FSI+GIVSKS++HRRWLWCSFFIG LLSVFW YFM+SLPRFR
Sbjct: 121 VDSWMIIAADWVAILACTFSIVGIVSKSSHHRRWLWCSFFIGILLSVFWFYFMMSLPRFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIW PFGPLSGAGICLYVDHLL ESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWLPFGPLSGAGICLYVDHLLTESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. ExPASy TrEMBL
Match: A0A0A0LYS6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G580190 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.4e-92
Identity = 175/224 (78.12%), Postives = 186/224 (83.04%), Query Frame = 0


Query: 1   MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRVS 60
           MAIKKLAR+LMKSR+  +SLPTRDDPS DDSRPIDSQ QEEMVRS ERANDQQS+LW   
Sbjct: 1   MAIKKLARILMKSRDHDVSLPTRDDPSFDDSRPIDSQVQEEMVRSLERANDQQSVLW--- 60

Query: 61  FDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFMED 120
                                 RTVFA FLFC+A FLLYSI QQ+SSPWELRYHAYFMED
Sbjct: 61  ----------------------RTVFAVFLFCYAGFLLYSIRQQISSPWELRYHAYFMED 120

Query: 121 VSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPRFR 180
           V SWMIIAADWVAILAC+FSIIGIVSKS++HRRWLWCSFFIG LLSVFW YFM+SLP+FR
Sbjct: 121 VDSWMIIAADWVAILACTFSIIGIVSKSSHHRRWLWCSFFIGILLSVFWFYFMMSLPKFR 180

Query: 181 WDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 225
           WDVIW P GPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN
Sbjct: 181 WDVIWLPLGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKAN 199

[Close]

BLAST of Carg12263-RA vs. TAIR 10
Match: AT4G26240.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-64
Identity = 124/225 (55.11%), Postives = 150/225 (66.67%), Query Frame = 0


Query: 3   IKKLARVLMKSR----EDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWR 62
           +KKLAR   ++R    +D   LPT +D    DSRPID+Q QEE VR  E A+ QQSL W 
Sbjct: 1   MKKLARKWRRTRRDEDDDKFVLPTSEDV---DSRPIDTQEQEEYVRYLEEAHAQQSLQW- 60

Query: 63  VSFDCIFIYGFFLIFLYSKKILDSRTVFAAFLFCFAIFLLYSIIQQVSSPWELRYHAYFM 122
                                   R+VF   L CF  FL YSI QQ  SPWELRYHAYFM
Sbjct: 61  ------------------------RSVFVVLLICFGAFLFYSIFQQFMSPWELRYHAYFM 120

Query: 123 EDVSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLPR 182
           ED+ SWM+I+A+W+AI+ACS SI+G+  K N HRRW W S  +G  L++FWLY+++ LP+
Sbjct: 121 EDLKSWMVISAEWIAIMACSLSIVGLRDKKNDHRRWFWYSCVVGSALTIFWLYYLLRLPK 180

Query: 183 FRWDVIWRPFGPLSGAGICLYVDHLLAESSEEIRKLRGYMYSYKA 224
           FRWD IW PFGPL GAGICLYVDHLL ESSEE++KLR YMY+YKA
Sbjct: 181 FRWDAIWLPFGPLCGAGICLYVDHLLEESSEEVKKLRNYMYAYKA 197

The following BLAST results are available for this feature:

BLAST of Carg12263-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021915.1	1.7e-122	100.00	hypothetical protein SDJN02_15643 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588018.1	6.0e-104	88.84	hypothetical protein SDJN03_16583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022927992.1	2.3e-103	88.39	uncharacterized protein LOC111434892 [Cucurbita moschata]	[more]
XP_023002535.1	6.6e-103	87.95	uncharacterized protein LOC111496345 [Cucurbita maxima]	[more]
XP_023531869.1	7.3e-102	87.50	uncharacterized protein LOC111794002 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg12263-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12263-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIP3	1.1e-103	88.39	uncharacterized protein LOC111434892 OS=Cucurbita moschata OX=3662 GN=LOC1114348...	[more]
A0A6J1KP79	3.2e-103	87.95	uncharacterized protein LOC111496345 OS=Cucurbita maxima OX=3661 GN=LOC111496345...	[more]
A0A5D3CE29	1.4e-93	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BQS5	1.4e-93	78.57	uncharacterized protein LOC103492288 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LYS6	7.4e-92	78.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G580190 PE=4 SV=1	[more]

BLAST of Carg12263-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26240.1	1.7e-64	55.11	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36784	HISTONE-LYSINE N-METHYLTRANSFERASE	coord: 4..76 coord: 83..223

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12263	Carg12263	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12263-RA:1	Carg12263-RA:1	exon
Carg12263-RA:2	Carg12263-RA:2	exon
Carg12263-RA:3	Carg12263-RA:3	exon
Carg12263-RA:4	Carg12263-RA:4	exon
Carg12263-RA:5	Carg12263-RA:5	exon
Carg12263-RA:6	Carg12263-RA:6	exon
Carg12263-RA:7	Carg12263-RA:7	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12263-RA:five_prime_utr	Carg12263-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12263-RA:cds	Carg12263-RA:cds	CDS
Carg12263-RA:cds	Carg12263-RA:cds_2	CDS
Carg12263-RA:cds	Carg12263-RA:cds_3	CDS
Carg12263-RA:cds	Carg12263-RA:cds_4	CDS
Carg12263-RA:cds	Carg12263-RA:cds_5	CDS
Carg12263-RA:cds	Carg12263-RA:cds_6	CDS
Carg12263-RA:cds	Carg12263-RA:cds_7	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12263-RA	Carg12263-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane