Carg12208-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12208-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RanBP2-type domain-containing protein
Location	Carg_Chr11: 2707374 .. 2709599 (-)
Sequence length	1634
RNA-Seq Expression	Carg12208-RA
Synteny	Carg12208-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGTTGTCAATTTGTTTGGATGGTCCTTTTGCAGTTGTATCAGGGAAAATCTTTGGAGATATATGGACGTTGTACAGCAAATGAGCTTCCTATACAATATGTTACTTTTCTTAATATCTTATAAATCCACTACCATCTTTATTTCAGGATATAGAATACATCCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCACCGGTATGTTTCTGATTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGAGTGACTTCACCCCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATATGGGAGAGGTTTTGATAGCCCTGGACTTGCTCCTGGGCCATTTAGAGGGGAACGTAGTAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTGTAAGTACTCATCTAACACCACAATTTGATATATATATATATATATATATATATATATATATATATATATATATGACAATGGATTTGCTTCTTTTATATACAGACGAACATTTGTTGATACCCATGCCATTACACCTTTTTCTCATATGAACGAGAAATTCAACCATTGCATGGAATAGGATCCTTTTCTATTGATATGTCTTTTGGTTGGTTGAATTATTATTACTTTTTGTTTGGAGGAGTTGATGATTGTGTGTATTTTATTTTTATGTTTTTGAAAAATAGTTGAGGCTGCTTTTCTTGAAAGCATTTTTTCTTTCATATATATTGCTTTCATGGATTTCAAAAAAGAAAAAACATATTACCTTTATTTTATGTTGATCAGACTGAATGAAAAATGTCACGTCAGAAAAGCTCGTGTGTGCACCAAATCTTGTAAATGAATGATGGTTTTTTCAATTTCTTGCCCATTTGGCATGTGATCTGTACGAGGAATATTTTTATAATGCATAGCATGGTGTACTTTCTATCATTACATTGCTTCGTGGTGCATTTCTTTTTTCAAACCAGTTGTATTCTTATTCTTCATTAGATGTGACAACCTAAACTTTGGAAGACGAGAATTTTGTAACAAATGCAACAGACCCCGCACTGGAGCTGGTGGAAGACCTCGAAGAGGCCATGTTGGTGGTCCACCGTCCCTGCATTCTCCTCCTAGACGCTTTAGTGCCCACCCAATTGAACGTTCTCCTGGCAGGACTCCTAATGAATATAGGTCTCCTCTCCGTGCTTGGACCAGGGGTTGTTCCAGGGACATTGCAGCTGGTGGTCTGGCACCTCAGAGGTATGAAAACAGGTACCCAGACCTGCGGAGGGATCGGGTGGATTATCTAGAAGACAGCTTCAGAGGAAGATCCAAGTTCGACAGGCCAATTCTTTCCGATTGGCCCCTTAGAGACCATGAAAGAGATGAGTTCATCACCGAGAGGAAGGGATTCGAAAGAAGGCCACCATCCCCACCACTGCCGTTGCTTCCTCAACGTGGCCGCTGGGCACGTGATGTGAGAGAGAGGAGCCGCTCCCCAATTAGAGATCCAATTAGATCTCCATTGAGAGTCTCGCTTCGGTCTCCACGCGGCCTTCCACCAAAAGAGTTCCGTAGAGATGTGTTTGTCGAAAGGGAGCACATTTATAGGCGCGGCCTTGGACAAGAGCGCGATGGAGGTCCATTTTAGCGTTGAAAATTGAGCAGCACCCCGTAATCTGTGTTTACAGCCTTGGAAAGAGGATGTTAAGAAGAGCCTGCTTAATTTTTTCCTGACAGGCCCTGTGTGTCGAAACCTGCTATTGGGGTCCTCTATCTTCTGCCTCGTGTATTTCGTATTTCGTATTTCTTCTTATTATTGTATGGTGTAGTTAGTTGTTGACAGCCTTCAAACATATTGAAGTAAATGCCTTCCATATATACGGTGTATCTTTGGTTTATTGGTCAGGCTGTAGTTTGGATTTTGCTACTTGGAGGGAGCCACCTCTGTTTGGTTCTTTTTCAGTGATCGGATCAGACAGAGAAGATCTACAAATTTTGAGGACAGTTGCTTGCTTTTCACGCAGTGTTCGTTAGATAACACGATCTTACATGAACCTTGACGTTTATTAACTAATACGTTTCTACACGAGCCTCGACTTTATTTTTGCTAAGAAATATTTTATCAAGGTCAATTACTTATATACTGTAATAATAAGGTTGAAATAACAAGAAAGTCAACAAAAAAAATTA

mRNA sequence

ATGGCAATGGTTGTCAATTTGTTTGGATGGTCCTTTTGCAGTTGTATCAGGGAAAATCTTTGGAGATATATGGACGTTGTACAGCAAATGAGCTTCCTATACAATATGTTACTTTTCTTAATATCTTATAAATCCACTACCATCTTTATTTCAGGATATAGAATACATCCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCACCGGTATGTTTCTGATTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGAGTGACTTCACCCCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATATGGGAGAGGTTTTGATAGCCCTGGACTTGCTCCTGGGCCATTTAGAGGGGAACGTAGTAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACCTAAACTTTGGAAGACGAGAATTTTGTAACAAATGCAACAGACCCCGCACTGGAGCTGGTGGAAGACCTCGAAGAGGCCATGTTGGTGGTCCACCGTCCCTGCATTCTCCTCCTAGACGCTTTAGTGCCCACCCAATTGAACGTTCTCCTGGCAGGACTCCTAATGAATATAGGTCTCCTCTCCGTGCTTGGACCAGGGGTTGTTCCAGGGACATTGCAGCTGGTGGTCTGGCACCTCAGAGGTATGAAAACAGGTACCCAGACCTGCGGAGGGATCGGGTGGATTATCTAGAAGACAGCTTCAGAGGAAGATCCAAGTTCGACAGGCCAATTCTTTCCGATTGGCCCCTTAGAGACCATGAAAGAGATGAGTTCATCACCGAGAGGAAGGGATTCGAAAGAAGGCCACCATCCCCACCACTGCCGTTGCTTCCTCAACGTGGCCGCTGGGCACGTGATGTGAGAGAGAGGAGCCGCTCCCCAATTAGAGATCCAATTAGATCTCCATTGAGAGTCTCGCTTCGGTCTCCACGCGGCCTTCCACCAAAAGAGTTCCGTAGAGATGTGTTTGTCGAAAGGGAGCACATTTATAGGCGCGGCCTTGGACAAGAGCGCGATGGAGGTCCATTTTAGCGTTGAAAATTGAGCAGCACCCCGTAATCTGTGTTTACAGCCTTGGAAAGAGGATGTTAAGAAGAGCCTGCTTAATTTTTTCCTGACAGGCCCTGTGTGTCGAAACCTGCTATTGGGGTCCTCTATCTTCTGCCTCGTGTATTTCGTATTTCGTATTTCTTCTTATTATTGTATGGTGTAGTTAGTTGTTGACAGCCTTCAAACATATTGAAGTAAATGCCTTCCATATATACGGTGTATCTTTGGTTTATTGGTCAGGCTGTAGTTTGGATTTTGCTACTTGGAGGGAGCCACCTCTGTTTGGTTCTTTTTCAGTGATCGGATCAGACAGAGAAGATCTACAAATTTTGAGGACAGTTGCTTGCTTTTCACGCAGTGTTCGTTAGATAACACGATCTTACATGAACCTTGACGTTTATTAACTAATACGTTTCTACACGAGCCTCGACTTTATTTTTGCTAAGAAATATTTTATCAAGGTCAATTACTTATATACTGTAATAATAAGGTTGAAATAACAAGAAAGTCAACAAAAAAAATTA

Coding sequence (CDS)

ATGGCAATGGTTGTCAATTTGTTTGGATGGTCCTTTTGCAGTTGTATCAGGGAAAATCTTTGGAGATATATGGACGTTGTACAGCAAATGAGCTTCCTATACAATATGTTACTTTTCTTAATATCTTATAAATCCACTACCATCTTTATTTCAGGATATAGAATACATCCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCACCGGTATGTTTCTGATTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGAGTGACTTCACCCCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATATGGGAGAGGTTTTGATAGCCCTGGACTTGCTCCTGGGCCATTTAGAGGGGAACGTAGTAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACCTAAACTTTGGAAGACGAGAATTTTGTAACAAATGCAACAGACCCCGCACTGGAGCTGGTGGAAGACCTCGAAGAGGCCATGTTGGTGGTCCACCGTCCCTGCATTCTCCTCCTAGACGCTTTAGTGCCCACCCAATTGAACGTTCTCCTGGCAGGACTCCTAATGAATATAGGTCTCCTCTCCGTGCTTGGACCAGGGGTTGTTCCAGGGACATTGCAGCTGGTGGTCTGGCACCTCAGAGGTATGAAAACAGGTACCCAGACCTGCGGAGGGATCGGGTGGATTATCTAGAAGACAGCTTCAGAGGAAGATCCAAGTTCGACAGGCCAATTCTTTCCGATTGGCCCCTTAGAGACCATGAAAGAGATGAGTTCATCACCGAGAGGAAGGGATTCGAAAGAAGGCCACCATCCCCACCACTGCCGTTGCTTCCTCAACGTGGCCGCTGGGCACGTGATGTGAGAGAGAGGAGCCGCTCCCCAATTAGAGATCCAATTAGATCTCCATTGAGAGTCTCGCTTCGGTCTCCACGCGGCCTTCCACCAAAAGAGTTCCGTAGAGATGTGTTTGTCGAAAGGGAGCACATTTATAGGCGCGGCCTTGGACAAGAGCGCGATGGAGGTCCATTTTAG

Protein sequence

MAMVVNLFGWSFCSCIRENLWRYMDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSASPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYPDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPSPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIYRRGLGQERDGGPF

Homology

[Close]

BLAST of Carg12208-RA vs. NCBI nr
Match: KAG7021861.1 (hypothetical protein SDJN02_15589, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 763.8 bits (1971), Expect = 6.5e-217
Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 0


Query: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSA 60
           MAMVVNLFGWSFCSCIRENLWRYMDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSA
Sbjct: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSA 60

Query: 61  SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSP 120
           SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSP
Sbjct: 61  SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSP 120

Query: 121 GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH 180
           GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH
Sbjct: 121 GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH 180

Query: 181 VGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYP 240
           VGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYP
Sbjct: 181 VGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYP 240

Query: 241 DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPSPPLPLLPQR 300
           DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPSPPLPLLPQR
Sbjct: 241 DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPSPPLPLLPQR 300

Query: 301 GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIYRRGLGQERDG 360
           GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIYRRGLGQERDG
Sbjct: 301 GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIYRRGLGQERDG 360

Query: 361 GPF 364
           GPF
Sbjct: 361 GPF 363

[Close]

BLAST of Carg12208-RA vs. NCBI nr
Match: XP_023004075.1 (uncharacterized protein LOC111497489 isoform X2 [Cucurbita maxima] >XP_023004084.1 uncharacterized protein LOC111497489 isoform X2 [Cucurbita maxima] >XP_023004092.1 uncharacterized protein LOC111497489 isoform X2 [Cucurbita maxima] >XP_023004100.1 uncharacterized protein LOC111497489 isoform X2 [Cucurbita maxima])

HSP 1 Score: 741.5 bits (1913), Expect = 3.5e-210
Identity = 353/363 (97.25%), Postives = 356/363 (98.07%), Query Frame = 0


Query: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSA 60
           MAMVVNLFGWSFCSCIRENLWRYMDVV Q+SFLYNMLLFLISYKSTTIFISGYRIH GSA
Sbjct: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVHQISFLYNMLLFLISYKSTTIFISGYRIHAGSA 60

Query: 61  SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSP 120
           SPTRHRDD RYVSDFDRSGDLMRGREFGGRSDHGRYR TSPHYSRRISGGRPYGRGFDSP
Sbjct: 61  SPTRHRDDQRYVSDFDRSGDLMRGREFGGRSDHGRYRETSPHYSRRISGGRPYGRGFDSP 120

Query: 121 GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH 180
           GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH
Sbjct: 121 GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH 180

Query: 181 VGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYP 240
           VGGPPSLHSPPRRF+AHPIERSPGRTPNEYRSP RAWTRGCSRDIAAGGLAPQRYENRY 
Sbjct: 181 VGGPPSLHSPPRRFTAHPIERSPGRTPNEYRSPPRAWTRGCSRDIAAGGLAPQRYENRYS 240

Query: 241 DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPSPPLPLLPQR 300
           DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFI ERKGFERRPPSPPLPLLPQR
Sbjct: 241 DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFIPERKGFERRPPSPPLPLLPQR 300

Query: 301 GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIYRRGLGQERDG 360
           GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPK+FRRDVFVEREHIYRRGLGQERDG
Sbjct: 301 GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKDFRRDVFVEREHIYRRGLGQERDG 360

Query: 361 GPF 364
           GPF
Sbjct: 361 GPF 363

[Close]

BLAST of Carg12208-RA vs. NCBI nr
Match: XP_023529922.1 (uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023529923.1 uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023529924.1 uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023529925.1 uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023529926.1 uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023529927.1 uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023529928.1 uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023529929.1 uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 734.6 bits (1895), Expect = 4.2e-208
Identity = 350/363 (96.42%), Postives = 355/363 (97.80%), Query Frame = 0


Query: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSA 60
           MAMVVNLFGWSFCSCIRENLWRYMDVV Q+SFLYNMLLFLISYKSTTIFISGYRIH GSA
Sbjct: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVHQISFLYNMLLFLISYKSTTIFISGYRIHAGSA 60

Query: 61  SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSP 120
           SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYR TSPHYSRRISGGRPYGRGFDSP
Sbjct: 61  SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRETSPHYSRRISGGRPYGRGFDSP 120

Query: 121 GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH 180
           GLAPGPFRGERSNNPNV PRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRG 
Sbjct: 121 GLAPGPFRGERSNNPNVCPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGP 180

Query: 181 VGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYP 240
           VGGPPSLHSPPRRF+AHPIERSPGRTPNEYRSP RAWTRGCSRDIAAGGLAPQRYENRY 
Sbjct: 181 VGGPPSLHSPPRRFTAHPIERSPGRTPNEYRSPPRAWTRGCSRDIAAGGLAPQRYENRYS 240

Query: 241 DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPSPPLPLLPQR 300
           DLRRDRVDYLEDSFRGRSKFDRPILSDWPLR+HERDEFITERKGFERRP SPPLPLLPQR
Sbjct: 241 DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRNHERDEFITERKGFERRPASPPLPLLPQR 300

Query: 301 GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIYRRGLGQERDG 360
           GRWARDVRERSRSPIRDPIRSPLR+SLRSPRGLPPK+FRRDVFVEREHIYRRGLGQERDG
Sbjct: 301 GRWARDVRERSRSPIRDPIRSPLRISLRSPRGLPPKDFRRDVFVEREHIYRRGLGQERDG 360

Query: 361 GPF 364
           GPF
Sbjct: 361 GPF 363

[Close]

BLAST of Carg12208-RA vs. NCBI nr
Match: KAG6587971.1 (hypothetical protein SDJN03_16536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 658.3 bits (1697), Expect = 3.9e-185
Identity = 311/317 (98.11%), Postives = 313/317 (98.74%), Query Frame = 0


Query: 47  TIFISGYRIHPGSASPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRR 106
           +I + GYRIHPGSASPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRR
Sbjct: 70  SICLDGYRIHPGSASPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRR 129

Query: 107 ISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCN 166
           ISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCN
Sbjct: 130 ISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCN 189

Query: 167 RPRTGAGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIA 226
           RPRTGAGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSP RAWTRGCSRDIA
Sbjct: 190 RPRTGAGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPPRAWTRGCSRDIA 249

Query: 227 AGGLAPQRYENRYPDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFE 286
           AGGLAPQRYENRY DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFE
Sbjct: 250 AGGLAPQRYENRYSDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFE 309

Query: 287 RRPPSPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVER 346
           RRPPSPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVER
Sbjct: 310 RRPPSPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVER 369

Query: 347 EHIYRRGLGQERDGGPF 364
           EHIYRRGLGQERDGGPF
Sbjct: 370 EHIYRRGLGQERDGGPF 386

[Close]

BLAST of Carg12208-RA vs. NCBI nr
Match: XP_023004109.1 (uncharacterized protein LOC111497489 isoform X3 [Cucurbita maxima])

HSP 1 Score: 644.0 bits (1660), Expect = 7.5e-181
Identity = 304/313 (97.12%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 51  SGYRIHPGSASPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGG 110
           +GYRIH GSASPTRHRDD RYVSDFDRSGDLMRGREFGGRSDHGRYR TSPHYSRRISGG
Sbjct: 45  AGYRIHAGSASPTRHRDDQRYVSDFDRSGDLMRGREFGGRSDHGRYRETSPHYSRRISGG 104

Query: 111 RPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRT 170
           RPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRT
Sbjct: 105 RPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRT 164

Query: 171 GAGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGL 230
           GAGGRPRRGHVGGPPSLHSPPRRF+AHPIERSPGRTPNEYRSP RAWTRGCSRDIAAGGL
Sbjct: 165 GAGGRPRRGHVGGPPSLHSPPRRFTAHPIERSPGRTPNEYRSPPRAWTRGCSRDIAAGGL 224

Query: 231 APQRYENRYPDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPP 290
           APQRYENRY DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFI ERKGFERRPP
Sbjct: 225 APQRYENRYSDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFIPERKGFERRPP 284

Query: 291 SPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIY 350
           SPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPK+FRRDVFVEREHIY
Sbjct: 285 SPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKDFRRDVFVEREHIY 344

Query: 351 RRGLGQERDGGPF 364
           RRGLGQERDGGPF
Sbjct: 345 RRGLGQERDGGPF 357

[Close]

BLAST of Carg12208-RA vs. ExPASy Swiss-Prot
Match: P56959 (RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-06
Identity = 38/115 (33.04%), Postives = 50/115 (43.48%), Query Frame = 0


Query: 80  DLMRGREFGGRSDHGRYRVTSPHYSRRISGGR-------PYGRGFDSPGLAPGPFRG--- 139
           D   G+EF G      +      ++R    GR       P GRG    G + G  RG   
Sbjct: 345 DWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFP 404

Query: 140 ERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPR-TGAGGRPRRGHVGG 184
                   + R GDW C +P C+N+NF  R  CN+C  P+  G GG P   H+GG
Sbjct: 405 SGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGG 459

[Close]

BLAST of Carg12208-RA vs. ExPASy Swiss-Prot
Match: Q28009 (RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-06
Identity = 53/178 (29.78%), Postives = 72/178 (40.45%), Query Frame = 0


Query: 80  DLMRGREFGGRSDHGRYRVTSPHYSRRISGGR-------PYGRGFDSPGLAPGPFRG--- 139
           D   G+EF G      +      ++R    GR       P GRG    G + G  RG   
Sbjct: 339 DWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFP 398

Query: 140 ERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPR-TGAGGRPRRGHVGGPPSLH 199
                   + R GDW C +P C+N+NF  R  CN+C  P+  G GG P   H+GG    +
Sbjct: 399 SGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGN---Y 458

Query: 200 SPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYPDLRRDR 247
              RR      +R   R     R   R    G  R    GG  P + ++R  + R+DR
Sbjct: 459 GDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDR----GGFGPGKMDSR-GEHRQDR 508

[Close]

BLAST of Carg12208-RA vs. ExPASy Swiss-Prot
Match: P35637 (RNA-binding protein FUS OS=Homo sapiens OX=9606 GN=FUS PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-06
Identity = 53/178 (29.78%), Postives = 72/178 (40.45%), Query Frame = 0


Query: 80  DLMRGREFGGRSDHGRYRVTSPHYSRRISGGR-------PYGRGFDSPGLAPGPFRG--- 139
           D   G+EF G      +      ++R    GR       P GRG    G + G  RG   
Sbjct: 352 DWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFP 411

Query: 140 ERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPR-TGAGGRPRRGHVGGPPSLH 199
                   + R GDW C +P C+N+NF  R  CN+C  P+  G GG P   H+GG    +
Sbjct: 412 SGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGN---Y 471

Query: 200 SPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYPDLRRDR 247
              RR      +R   R     R   R    G  R    GG  P + ++R  + R+DR
Sbjct: 472 GDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDR----GGFGPGKMDSR-GEHRQDR 521

[Close]

BLAST of Carg12208-RA vs. ExPASy Swiss-Prot
Match: Q92804 (TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.7e-06
Identity = 36/104 (34.62%), Postives = 45/104 (43.27%), Query Frame = 0


Query: 80  DLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRP 139
           D   G+EF G      +    P + R   GG   GR         G F+G   +     P
Sbjct: 301 DWFDGKEFHGNIIKVSFATRRPEFMR--GGGSGGGRRGRGGYRGRGGFQGRGGD-----P 360

Query: 140 RDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGHVGG 184
           + GDW C +P C N+NF RR  CN+CN PR     RP  G   G
Sbjct: 361 KSGDWVCPNPSCGNMNFARRNSCNQCNEPRP-EDSRPSGGDFRG 396

[Close]

BLAST of Carg12208-RA vs. ExPASy TrEMBL
Match: A0A6J1KTN3 (uncharacterized protein LOC111497489 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497489 PE=4 SV=1)

HSP 1 Score: 741.5 bits (1913), Expect = 1.7e-210
Identity = 353/363 (97.25%), Postives = 356/363 (98.07%), Query Frame = 0


Query: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSA 60
           MAMVVNLFGWSFCSCIRENLWRYMDVV Q+SFLYNMLLFLISYKSTTIFISGYRIH GSA
Sbjct: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVHQISFLYNMLLFLISYKSTTIFISGYRIHAGSA 60

Query: 61  SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSP 120
           SPTRHRDD RYVSDFDRSGDLMRGREFGGRSDHGRYR TSPHYSRRISGGRPYGRGFDSP
Sbjct: 61  SPTRHRDDQRYVSDFDRSGDLMRGREFGGRSDHGRYRETSPHYSRRISGGRPYGRGFDSP 120

Query: 121 GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH 180
           GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH
Sbjct: 121 GLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGH 180

Query: 181 VGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYP 240
           VGGPPSLHSPPRRF+AHPIERSPGRTPNEYRSP RAWTRGCSRDIAAGGLAPQRYENRY 
Sbjct: 181 VGGPPSLHSPPRRFTAHPIERSPGRTPNEYRSPPRAWTRGCSRDIAAGGLAPQRYENRYS 240

Query: 241 DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPSPPLPLLPQR 300
           DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFI ERKGFERRPPSPPLPLLPQR
Sbjct: 241 DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFIPERKGFERRPPSPPLPLLPQR 300

Query: 301 GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIYRRGLGQERDG 360
           GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPK+FRRDVFVEREHIYRRGLGQERDG
Sbjct: 301 GRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKDFRRDVFVEREHIYRRGLGQERDG 360

Query: 361 GPF 364
           GPF
Sbjct: 361 GPF 363

[Close]

BLAST of Carg12208-RA vs. ExPASy TrEMBL
Match: A0A6J1KVA4 (uncharacterized protein LOC111497489 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497489 PE=4 SV=1)

HSP 1 Score: 644.0 bits (1660), Expect = 3.6e-181
Identity = 304/313 (97.12%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 51  SGYRIHPGSASPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGG 110
           +GYRIH GSASPTRHRDD RYVSDFDRSGDLMRGREFGGRSDHGRYR TSPHYSRRISGG
Sbjct: 45  AGYRIHAGSASPTRHRDDQRYVSDFDRSGDLMRGREFGGRSDHGRYRETSPHYSRRISGG 104

Query: 111 RPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRT 170
           RPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRT
Sbjct: 105 RPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRT 164

Query: 171 GAGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGL 230
           GAGGRPRRGHVGGPPSLHSPPRRF+AHPIERSPGRTPNEYRSP RAWTRGCSRDIAAGGL
Sbjct: 165 GAGGRPRRGHVGGPPSLHSPPRRFTAHPIERSPGRTPNEYRSPPRAWTRGCSRDIAAGGL 224

Query: 231 APQRYENRYPDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPP 290
           APQRYENRY DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFI ERKGFERRPP
Sbjct: 225 APQRYENRYSDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFIPERKGFERRPP 284

Query: 291 SPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIY 350
           SPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPK+FRRDVFVEREHIY
Sbjct: 285 SPPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKDFRRDVFVEREHIY 344

Query: 351 RRGLGQERDGGPF 364
           RRGLGQERDGGPF
Sbjct: 345 RRGLGQERDGGPF 357

[Close]

BLAST of Carg12208-RA vs. ExPASy TrEMBL
Match: A0A6J1KR28 (uncharacterized protein LOC111497489 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497489 PE=4 SV=1)

HSP 1 Score: 643.3 bits (1658), Expect = 6.2e-181
Identity = 304/312 (97.44%), Postives = 306/312 (98.08%), Query Frame = 0


Query: 52  GYRIHPGSASPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGR 111
           GYRIH GSASPTRHRDD RYVSDFDRSGDLMRGREFGGRSDHGRYR TSPHYSRRISGGR
Sbjct: 66  GYRIHAGSASPTRHRDDQRYVSDFDRSGDLMRGREFGGRSDHGRYRETSPHYSRRISGGR 125

Query: 112 PYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTG 171
           PYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTG
Sbjct: 126 PYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTG 185

Query: 172 AGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLA 231
           AGGRPRRGHVGGPPSLHSPPRRF+AHPIERSPGRTPNEYRSP RAWTRGCSRDIAAGGLA
Sbjct: 186 AGGRPRRGHVGGPPSLHSPPRRFTAHPIERSPGRTPNEYRSPPRAWTRGCSRDIAAGGLA 245

Query: 232 PQRYENRYPDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPS 291
           PQRYENRY DLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFI ERKGFERRPPS
Sbjct: 246 PQRYENRYSDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFIPERKGFERRPPS 305

Query: 292 PPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKEFRRDVFVEREHIYR 351
           PPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPK+FRRDVFVEREHIYR
Sbjct: 306 PPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVSLRSPRGLPPKDFRRDVFVEREHIYR 365

Query: 352 RGLGQERDGGPF 364
           RGLGQERDGGPF
Sbjct: 366 RGLGQERDGGPF 377

[Close]

BLAST of Carg12208-RA vs. ExPASy TrEMBL
Match: A0A6J1HBF9 (uncharacterized protein LOC111461847 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111461847 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 9.3e-161
Identity = 295/399 (73.93%), Postives = 313/399 (78.45%), Query Frame = 0


Query: 1   MAMVVNLFGWSFCSCIRENLWRYMDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSA 60
           MAMVV+ FGWSFCSCIRENLWRYM VV ++ FL NMLLFLISY+ T  FISGYR+H GS 
Sbjct: 1   MAMVVSFFGWSFCSCIRENLWRYMVVVLRVVFLCNMLLFLISYEPTPFFISGYRMHAGSV 60

Query: 61  SPTRHRDDHRYVSDFDRSGDLMRGREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSP 120
           SPTR RDDHRY+SDFD S  L RGREFGG  D GRYR TSPHYSRR+SGGRP+GRGFD P
Sbjct: 61  SPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGP 120

Query: 121 GLAPGPFRGERS-NNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRG 180
           G APGPFRGERS NNPNVRPRDGDWYCSDPLCDNLNF RREFCN CNRPRTGAGG PRRG
Sbjct: 121 GHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRG 180

Query: 181 HVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRY 240
              GPPSLHSPPRRF+AHPIERSPGRT NEYRSP R W R   R+IAAGGLAP RYE+RY
Sbjct: 181 GYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARDGPREIAAGGLAPPRYESRY 240

Query: 241 PD--LRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERRPPS------ 300
            D  LRRDRVDYLEDSFRGRSKFDR   SDW LRD+ RD+FI ERKGFERRP S      
Sbjct: 241 SDHHLRRDRVDYLEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGFERRPLSPKGFER 300

Query: 301 -------------------------PPLPLLPQRGRWARDVRERSRSPIRDPIRSPLRVS 360
                                    PPL LLPQRGRWARDVRERSRSPIR P+RSPLRV 
Sbjct: 301 RPLSPKGFERRPQSPKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVP 360

Query: 361 LRSP--RGLPPKEFRRDVFVEREHIYRRGLGQERDGGPF 364
           LRSP   GLPPK++RRDVFVERE   RRGLG++RDGGPF
Sbjct: 361 LRSPLSGGLPPKDYRRDVFVERERDDRRGLGRDRDGGPF 399

[Close]

BLAST of Carg12208-RA vs. ExPASy TrEMBL
Match: A0A1S4E3W3 (uncharacterized protein LOC103501026 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103501026 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.5e-145
Identity = 267/345 (77.39%), Postives = 290/345 (84.06%), Query Frame = 0


Query: 24  MDVVQQMSFLYNMLLFLISYKSTTIFISGYRIHPGSASPTRHRDDHRYVSDFDRSGDLMR 83
           M VV +M FL   L+FLISY+ TT FISGYRIH GS SP R RD HRY+S+F+ S  L R
Sbjct: 1   MVVVLRMIFL---LIFLISYEPTTFFISGYRIHAGSVSPARRRDVHRYISNFNHSDGLAR 60

Query: 84  GREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSPGLAPGPFRGERS-NNPNVRPRDG 143
           GREFGG  D  RYR TSPHY RR+ GGRP+GRG D P LAPGPFRGERS NNPNVRPRDG
Sbjct: 61  GREFGGGRDLDRYRDTSPHYGRRVGGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDG 120

Query: 144 DWYCSDPLCDNLNFGRREFCNKCNRPRTGAGGRPRRGHVGGPPSLHSPPRRFSAHPIERS 203
           DWYCSDPLCDNLNF RREFCN CNRPRTG GG PRRG+  GPPSLH+PPRRF+AHPIERS
Sbjct: 121 DWYCSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRGY-AGPPSLHTPPRRFAAHPIERS 180

Query: 204 PGRTPNEYRSPLRAWTRGCSRDIAAGGLAPQRYENRYPD-LRRDRVDYLEDSFRGRSKFD 263
           PGRT NEYRSP R+W R  SR++AAGGLAP RYE+RY D LRRDRVDYLEDSFRGRSKFD
Sbjct: 181 PGRTLNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDHLRRDRVDYLEDSFRGRSKFD 240

Query: 264 RPILS-DWPLRDHERDEFITERKGFERRPPSPPLPLLPQRGRWARDVRERSRSPIRDPIR 323
           RP+ S DW LRD+ RD+FITERKGFERRPPSPPLPLLPQRGRW+RDVRERSRSPIR PIR
Sbjct: 241 RPLPSADWALRDNGRDDFITERKGFERRPPSPPLPLLPQRGRWSRDVRERSRSPIRGPIR 300

Query: 324 SPLRVSLRSP--RGLPPKEFRRDVFVEREHIYRRGLGQERDGGPF 364
           SPLRV LRSP   GLPPK+FRRDVF ERE   RRGLG++R+GGPF
Sbjct: 301 SPLRVPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 341

[Close]

BLAST of Carg12208-RA vs. TAIR 10
Match: AT4G28990.1 (RNA-binding protein-related )

HSP 1 Score: 152.1 bits (383), Expect = 8.4e-37
Identity = 119/306 (38.89%), Postives = 150/306 (49.02%), Query Frame = 0


Query: 52  GYRIHPGSASPTRH-RDDHRYVSDFDRSGDLMRGREFGGRSD-HGRYRVTSPHYSRRISG 111
           G+R    S+SP R   +DH++ SD + SG   RGRE   R +  GR+R  SP  +R  +G
Sbjct: 64  GHRTRASSSSPGRRGYEDHKHGSDLNHSGVPPRGRELSSRREAPGRHRDYSPPLARGGAG 123

Query: 112 GRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPR 171
            RPY RG D P    G     R+N   V+PR+GDWYC DPLC NLNF RRE C KC R R
Sbjct: 124 ARPYRRGLDGPEPPHGRDGMSRNNISKVQPREGDWYCLDPLCRNLNFARRESCYKCKRHR 183

Query: 172 TGAGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGG 231
                 P    +  PP  HSP R F             N YRSP R W R          
Sbjct: 184 YAPANSPPLPRLLPPPMNHSPRRDF-------------NGYRSPPRGWPR---------D 243

Query: 232 LAPQRYEN-RYPDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERR 291
             P R+++  + D  RDR  Y +  +       R I SDW   +         +  ++RR
Sbjct: 244 YPPPRHDHPTWRDRERDRPHYSDHEYPP----SRRIASDWAHTEP------LPKPHYDRR 303

Query: 292 PPSPPLPLLPQRGRWARDVRERSRS-PIRDPIRSPLR----VSLRSPRGLPP--KEFRRD 348
           PP  P    P+ GRW R +RERSRS P+RD    PLR     SLR   G PP  +++RRD
Sbjct: 304 PPLSP----PRGGRWGRVLRERSRSPPLRDVPPPPLRDGPPPSLRG--GGPPLHRDYRRD 331

[Close]

BLAST of Carg12208-RA vs. TAIR 10
Match: AT4G28990.2 (RNA-binding protein-related )

HSP 1 Score: 152.1 bits (383), Expect = 8.4e-37
Identity = 119/306 (38.89%), Postives = 150/306 (49.02%), Query Frame = 0


Query: 52  GYRIHPGSASPTRH-RDDHRYVSDFDRSGDLMRGREFGGRSD-HGRYRVTSPHYSRRISG 111
           G+R    S+SP R   +DH++ SD + SG   RGRE   R +  GR+R  SP  +R  +G
Sbjct: 112 GHRTRASSSSPGRRGYEDHKHGSDLNHSGVPPRGRELSSRREAPGRHRDYSPPLARGGAG 171

Query: 112 GRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGDWYCSDPLCDNLNFGRREFCNKCNRPR 171
            RPY RG D P    G     R+N   V+PR+GDWYC DPLC NLNF RRE C KC R R
Sbjct: 172 ARPYRRGLDGPEPPHGRDGMSRNNISKVQPREGDWYCLDPLCRNLNFARRESCYKCKRHR 231

Query: 172 TGAGGRPRRGHVGGPPSLHSPPRRFSAHPIERSPGRTPNEYRSPLRAWTRGCSRDIAAGG 231
                 P    +  PP  HSP R F             N YRSP R W R          
Sbjct: 232 YAPANSPPLPRLLPPPMNHSPRRDF-------------NGYRSPPRGWPR---------D 291

Query: 232 LAPQRYEN-RYPDLRRDRVDYLEDSFRGRSKFDRPILSDWPLRDHERDEFITERKGFERR 291
             P R+++  + D  RDR  Y +  +       R I SDW   +         +  ++RR
Sbjct: 292 YPPPRHDHPTWRDRERDRPHYSDHEYPP----SRRIASDWAHTEP------LPKPHYDRR 351

Query: 292 PPSPPLPLLPQRGRWARDVRERSRS-PIRDPIRSPLR----VSLRSPRGLPP--KEFRRD 348
           PP  P    P+ GRW R +RERSRS P+RD    PLR     SLR   G PP  +++RRD
Sbjct: 352 PPLSP----PRGGRWGRVLRERSRSPPLRDVPPPPLRDGPPPSLRG--GGPPLHRDYRRD 379

[Close]

BLAST of Carg12208-RA vs. TAIR 10
Match: AT5G58470.1 (TBP-associated factor 15B )

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 34/99 (34.34%), Postives = 39/99 (39.39%), Query Frame = 0


Query: 84  GREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGD 143
           G  +GGR  +G              GG    RG    G   G   G  S       RDGD
Sbjct: 44  GGSYGGRGGYG-------------GGGGRGNRGGGGGGYQGGDRGGRGSGGGG---RDGD 103

Query: 144 WYCSDPLCDNLNFGRREFCNKCNR---PRTGAGGRPRRG 180
           W C +P C N+NF RR  CNKC       T +G   R G
Sbjct: 104 WRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGG 126

[Close]

BLAST of Carg12208-RA vs. TAIR 10
Match: AT5G58470.2 (TBP-associated factor 15B )

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 34/99 (34.34%), Postives = 39/99 (39.39%), Query Frame = 0


Query: 84  GREFGGRSDHGRYRVTSPHYSRRISGGRPYGRGFDSPGLAPGPFRGERSNNPNVRPRDGD 143
           G  +GGR  +G              GG    RG    G   G   G  S       RDGD
Sbjct: 44  GGSYGGRGGYG-------------GGGGRGNRGGGGGGYQGGDRGGRGSGGGG---RDGD 103

Query: 144 WYCSDPLCDNLNFGRREFCNKCNR---PRTGAGGRPRRG 180
           W C +P C N+NF RR  CNKC       T +G   R G
Sbjct: 104 WRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGG 126

The following BLAST results are available for this feature:

BLAST of Carg12208-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021861.1	6.5e-217	100.00	hypothetical protein SDJN02_15589, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023004075.1	3.5e-210	97.25	uncharacterized protein LOC111497489 isoform X2 [Cucurbita maxima] >XP_023004084...	[more]
XP_023529922.1	4.2e-208	96.42	uncharacterized protein LOC111792626 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]
KAG6587971.1	3.9e-185	98.11	hypothetical protein SDJN03_16536, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023004109.1	7.5e-181	97.12	uncharacterized protein LOC111497489 isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg12208-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56959	2.0e-06	33.04	RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1	[more]
Q28009	3.3e-06	29.78	RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2	[more]
P35637	3.3e-06	29.78	RNA-binding protein FUS OS=Homo sapiens OX=9606 GN=FUS PE=1 SV=1	[more]
Q92804	5.7e-06	34.62	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 ...	[more]

BLAST of Carg12208-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTN3	1.7e-210	97.25	uncharacterized protein LOC111497489 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KVA4	3.6e-181	97.12	uncharacterized protein LOC111497489 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KR28	6.2e-181	97.44	uncharacterized protein LOC111497489 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HBF9	9.3e-161	73.93	uncharacterized protein LOC111461847 isoform X4 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S4E3W3	2.5e-145	77.39	uncharacterized protein LOC103501026 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg12208-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28990.1	8.4e-37	38.89	RNA-binding protein-related	[more]
AT4G28990.2	8.4e-37	38.89	RNA-binding protein-related	[more]
AT5G58470.1	3.2e-04	34.34	TBP-associated factor 15B	[more]
AT5G58470.2	3.2e-04	34.34	TBP-associated factor 15B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 142..168 e-value: 0.002 score: 27.4
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 144..165
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 140..171 score: 9.2807
None	No IPR available	GENE3D	4.10.1060.10		coord: 131..172 e-value: 4.3E-12 score: 47.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..212
None	No IPR available	PANTHER	PTHR23238:SF26	GH13594P-RELATED	coord: 50..317
IPR034870	TAF15/EWS/TLS family	PANTHER	PTHR23238	RNA BINDING PROTEIN	coord: 50..317
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 133..171

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12208	Carg12208	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12208-RA:2	Carg12208-RA:2	exon
Carg12208-RA:1	Carg12208-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12208-RA:three_prime_utr	Carg12208-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12208-RA:cds	Carg12208-RA:cds_2	CDS
Carg12208-RA:cds	Carg12208-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12208-RA	Carg12208-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003712	transcription coregulator activity