Carg11205-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11205-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 5329173 .. 5330124 (-)
Sequence length300
RNA-Seq ExpressionCarg11205-RA
SyntenyCarg11205-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCTGAGTTTTATCGCATGAAAAGTCATGCGAAAGTGCGGTTCTGAGAATGCGCTCTTGAACTGATTTCTAAGGATTGCACTTCCTAGACACATATATTTGGAGGGACTTGACCTATCTTTTCACTTAGTCGACGAAGCGGGGGAACAGCCTATACATTCATCACCTCACAAATACGATTGGATAGGAAATTCTTCACCGTGCGAGTGTTCTCACACAATCTATATTAGGTGTGACTAGTAAATGACCACCCTCTGACACATGACAAGCTCATTCTCTTAATTTTAGAGTTCGGGACTGAGTTCCTGGTGCCATGCACCATCGCGCGTAAACCTTCACTTGACCCGAGAGGAGGGCTAAGTTAATACCTATCTGAATTTGAGCGCACTCCATTTCCAAAATAACGAGGTAATATGTTTATTTAAGTAGCTAAATATCACGTGGGTAGTTCCCTGAGTGTTACCATATATAAAACAAGATCTTAATTATTGAGGGTAAAACGAGACTTTACTCAGAAATACGTCTGCTGTAGTTACGAATAACGTGAAGCGGAATCGACTTGTATTTGAAAACCATGGACATAAGGGGCGTTGTCCAACGGTGCATAAGAGTAGTTCATAAAGCATTCAAGGAACTATAGAATATCCAGTATAACGACGCTATCATTTAATTGTGACATGGACCTGCACAAGCACAAGGTGTAGCACTGGACGTGCAAATCTGCTTCGCAGTTCGAACTGGCAACACTTTCTTGGGATCATTGATGTGAGATTTCTTCACGACCCTTCTTGCATTCTCTTCAAATTCCTAGCTATTCTGATAAACTTCTATGAACTTTTTTCCCCCCAGGTGGGTCGATTTTGCAAGATGGACCGGGATTCAAAGAACGAGAGAGTAGAGCGAGAAAAAAAAAAAAACGACACCCTTGTTCGAGAGATTATCCAACAA

mRNA sequence

ATGCCTTCTGAGTTTTATCGCATGAAAAGTCATGCGAAAGTGCGCACAAGGTGTAGCACTGGACGTGCAAATCTGCTTCGCAGTTCGAACTGGCAACACTTTCTTGGGATCATTGATGTGAGATTTCTTCACGACCCTTCTTGCATTCTCTTCAAATTCCTAGCTATTCTGATAAACTTCTATGAACTTTTTTCCCCCCAGGTGGGTCGATTTTGCAAGATGGACCGGGATTCAAAGAACGAGAGAGTAGAGCGAGAAAAAAAAAAAAACGACACCCTTGTTCGAGAGATTATCCAACAA

Coding sequence (CDS)

ATGCCTTCTGAGTTTTATCGCATGAAAAGTCATGCGAAAGTGCGCACAAGGTGTAGCACTGGACGTGCAAATCTGCTTCGCAGTTCGAACTGGCAACACTTTCTTGGGATCATTGATGTGAGATTTCTTCACGACCCTTCTTGCATTCTCTTCAAATTCCTAGCTATTCTGATAAACTTCTATGAACTTTTTTCCCCCCAGGTGGGTCGATTTTGCAAGATGGACCGGGATTCAAAGAACGAGAGAGTAGAGCGAGAAAAAAAAAAAAACGACACCCTTGTTCGAGAGATTATCCAACAA

Protein sequence

MPSEFYRMKSHAKVRTRCSTGRANLLRSSNWQHFLGIIDVRFLHDPSCILFKFLAILINFYELFSPQVGRFCKMDRDSKNERVEREKKKNDTLVREIIQQ
Homology
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BLAST of Carg11205-RA vs. NCBI nr
Match: KAG7018066.1 (hypothetical protein SDJN02_19932, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MPSEFYRMKSHAKVRTRCSTGRANLLRSSNWQHFLGIIDVRFLHDPSCILFKFLAILINF 60
           MPSEFYRMKSHAKVRTRCSTGRANLLRSSNWQHFLGIIDVRFLHDPSCILFKFLAILINF
Sbjct: 1   MPSEFYRMKSHAKVRTRCSTGRANLLRSSNWQHFLGIIDVRFLHDPSCILFKFLAILINF 60

Query: 61  YELFSPQVGRFCKMDRDSKNERVEREKKKNDTLVREIIQQ 101
           YELFSPQVGRFCKMDRDSKNERVEREKKKNDTLVREIIQQ
Sbjct: 61  YELFSPQVGRFCKMDRDSKNERVEREKKKNDTLVREIIQQ 100

The following BLAST results are available for this feature:
BLAST of Carg11205-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018066.11.2e-48100.00hypothetical protein SDJN02_19932, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg11205-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11205-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11205-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..96

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg11205Carg11205gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg11205-RA:1Carg11205-RA:1exon
Carg11205-RA:2Carg11205-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg11205-RA:cdsCarg11205-RA:cds_2CDS
Carg11205-RA:cdsCarg11205-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg11205-RACarg11205-RA-proteinpolypeptide