Carg10794-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10794-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S3
LocationCarg_Chr05: 12054113 .. 12056338 (+)
Sequence length939
RNA-Seq ExpressionCarg10794-RA
SyntenyCarg10794-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCCAGATGAGTAAGAAGAGAAAGGTTAGTCCACGAAATTTCTTAATTTGTACTTCTTTCCTCACCATCTCTACAACGATTTATCCGTTCTGCTATGTATTCATTGTGTTTTATGTTCGATTTTGTTTCAGTTTGTGGCCGATGGAGTGTTTTTCGCCGAGCTAAACGAGGTTTTGACCAGGGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTCACTCCAATGCGCACTGAGATCATCATCCGAGCCACCCGCACCCAAAACGTTCTCGGTTAGTTTACCTTGGTTTTGAAATTCAGTTGATTAAACAACCTGATTTCTTCGTTCACTGGATTTAATGTCTTATTAACATTCATCAATCTTACGTTCATAATTTTATTCGAATTTTTTGTTGGTTATTTAGGAGAAAAAGGTAGGAGGATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTCTATGCCGAGAAAGTTAACAATAGAGGGCTTTGTGCTATTGCCCAAGCCGAGTCTCTTCGTTATAAGCTTCTTGGTGGCCTTGCTGTGCGGAGGTACTTTTTCGTTTTCCTTCGCATAACCACTTATAGCATTTTTATTATTGTTTTGTGGATTTGTCTTGGAAATGGAAATATGATTTATGATTAGGAAAGAATAAAGATCACAGATTCCTTATTTTCTTGCTCACAGCTCTGATATATGGTTCTAACAATCTCATTTATGGGATGACTTCGTTTTAGTTTCATAAAAGATGGGTTTGTCCTTGATGTTTTCTTATGTCATCTACAAAGCAGATTGGTGTTTTGGTACCAATCTTGTGTCGGAAGGTGACAATATAAATTGTACTCTTCCGTTTGATAATCATTGTGGAATCATTTTGTTTCACACTGTAACCTTAGGGAGGAGACATGCTTCTGCCTCCATATTTTCCTCAAACTTTTTCCTCCATATTTTCTGAATCTAGAATGGAAAATTCACAATACGTTGAATTAGTAAAATTAATACAGTTTATTATATATTAGCGTAATTTACACATGCCAACCTCATATTTTTGAAGAATAGGCAAATTAATAATATATTTTTAAAATATTTATGTGGGACTCTGAGATTTGTGTGCTCTCCTGGAGGTGTGAATCAATAGTTTGAGCCTTGCCACTAGGCTGAAGCCTTGAATTGGCTGTTCTTTAACTGAATGTTTGGTTTGTATACTTTTCATTTTTCGTGTGTATATTATTACCTACTAGGTAATGTTGCTACTAAGACCTGCCCCTTTTATTCGTTGTGGTAAAACATTGAAGTTGATTGATTTTGGGCCTATGATGCTATTTTATATCTTTTGACTGATCTATTAATAGTGACAGTTTCAGAGTGACACTATATTACTATTAGCCAATCTGCTGCATGCTTATTTATGTTCTTTTTCCATCAGGGCATGCTATGGTGTTCTGAGATTCGTCATGGAAAGTGGAGCAAAGGGTTGCGAGGTTAGCTTGTAGCTCAATCCATTGTTATCACTATGTGAAAAGTTTGTATAAGGGATGTTAACATGTAATGCTCAACATGCAAACAGGTTATTGTCAGTGGAAAACTGAGAGCACAGCGTGCAAAGTCTATGAAGTTTAAAGATGGATATATGATATCTTCGGGTCAACCAGTGAGAGATTATATTGACTCAGCTGTTAGGCACGTTCTTCTCAGACAGGTTAGCTTTTGAGAGTTCATAAGAAACAGGTGCTTACATGTTATTACATCTGTCATTTGGCTTAATGTTGTTTTGTTTTTGGGTCAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGTCCCTACCACCCCTCTTCCTGATGTTGTCGTAATCCATTCTCCCAAGGAGGAAGAAGAAATCGTCCATAGACCAGCAGCAGCAGCAGCAGTTTTGACCACTGATATTGAGGTTCCAGTAGTAGTAGCAGCTTGAGAGGCTCTTTTTTTTCTTCTAGATATTTATTCATGGAATCAACCATCATCATTTTTGTATTTTCTGTCCCAAGATTTCGTTTCATGTCTCATTGATCTGTTGGTTTGAGCCTCCTGACTGCCCAACTTTCTTTTGGATAATCAAACAAAATGCATATGGAGAACAGTTTTTTATGATCCCTTAGCCTTTTTATATATTATTAGCTTTTG

mRNA sequence

ATGGCGACCCAGATGAGTAAGAAGAGAAAGTTTGTGGCCGATGGAGTGTTTTTCGCCGAGCTAAACGAGGTTTTGACCAGGGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTCACTCCAATGCGCACTGAGATCATCATCCGAGCCACCCGCACCCAAAACGTTCTCGGAGAAAAAGGTAGGAGGATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTCTATGCCGAGAAAGTTAACAATAGAGGGCTTTGTGCTATTGCCCAAGCCGAGTCTCTTCGTTATAAGCTTCTTGGTGGCCTTGCTGTGCGGAGGGCATGCTATGGTGTTCTGAGATTCGTCATGGAAAGTGGAGCAAAGGGTTGCGAGGTTATTGTCAGTGGAAAACTGAGAGCACAGCGTGCAAAGTCTATGAAGTTTAAAGATGGATATATGATATCTTCGGGTCAACCAGTGAGAGATTATATTGACTCAGCTGTTAGGCACGTTCTTCTCAGACAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGTCCCTACCACCCCTCTTCCTGATGTTGTCGTAATCCATTCTCCCAAGGAGGAAGAAGAAATCGTCCATAGACCAGCAGCAGCAGCAGCAGTTTTGACCACTGATATTGAGGTTCCAGTAGTAGTAGCAGCTTGAGAGGCTCTTTTTTTTCTTCTAGATATTTATTCATGGAATCAACCATCATCATTTTTGTATTTTCTGTCCCAAGATTTCGTTTCATGTCTCATTGATCTGTTGGTTTGAGCCTCCTGACTGCCCAACTTTCTTTTGGATAATCAAACAAAATGCATATGGAGAACAGTTTTTTATGATCCCTTAGCCTTTTTATATATTATTAGCTTTTG

Coding sequence (CDS)

ATGGCGACCCAGATGAGTAAGAAGAGAAAGTTTGTGGCCGATGGAGTGTTTTTCGCCGAGCTAAACGAGGTTTTGACCAGGGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTCACTCCAATGCGCACTGAGATCATCATCCGAGCCACCCGCACCCAAAACGTTCTCGGAGAAAAAGGTAGGAGGATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTCTATGCCGAGAAAGTTAACAATAGAGGGCTTTGTGCTATTGCCCAAGCCGAGTCTCTTCGTTATAAGCTTCTTGGTGGCCTTGCTGTGCGGAGGGCATGCTATGGTGTTCTGAGATTCGTCATGGAAAGTGGAGCAAAGGGTTGCGAGGTTATTGTCAGTGGAAAACTGAGAGCACAGCGTGCAAAGTCTATGAAGTTTAAAGATGGATATATGATATCTTCGGGTCAACCAGTGAGAGATTATATTGACTCAGCTGTTAGGCACGTTCTTCTCAGACAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGTCCCTACCACCCCTCTTCCTGA

Protein sequence

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPYHPSS
Homology
[Close]
BLAST of Carg10794-RA vs. NCBI nr
Match: KAG7030498.1 (40S ribosomal protein S3-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHPSS 206
           VLGIKVKIMLDWDPKGKQGPYHPSS
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPYHPSS 205

[Close]
BLAST of Carg10794-RA vs. NCBI nr
Match: XP_022946744.1 (40S ribosomal protein S3-2-like [Cucurbita moschata])

HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. NCBI nr
Match: XP_038890738.1 (40S ribosomal protein S3-2 [Benincasa hispida])

HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. NCBI nr
Match: XP_022938091.1 (40S ribosomal protein S3-2-like [Cucurbita moschata])

HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. NCBI nr
Match: KAG6586486.1 (40S ribosomal protein S3-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy Swiss-Prot
Match: Q9FJA6 (40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.1e-102
Identity = 188/203 (92.61%), Postives = 198/203 (97.54%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLG+KVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy Swiss-Prot
Match: Q9SIP7 (40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 5.3e-102
Identity = 188/203 (92.61%), Postives = 196/203 (96.55%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDP GK GP  P
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy Swiss-Prot
Match: Q9M339 (40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.6e-101
Identity = 187/203 (92.12%), Postives = 195/203 (96.06%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVK+MLDWDPKG  GP  P
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy Swiss-Prot
Match: P02350 (40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2)

HSP 1 Score: 340.5 bits (872), Expect = 1.3e-92
Identity = 175/203 (86.21%), Postives = 182/203 (89.66%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIML WDP GK GP  P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy Swiss-Prot
Match: P47835 (40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.3e-92
Identity = 175/203 (86.21%), Postives = 182/203 (89.66%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA QMSKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLG
Sbjct: 1   MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIML WDP GK GP  P
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy TrEMBL
Match: A0A6J1HP95 (40S ribosomal protein S3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465403 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy TrEMBL
Match: A0A0A0LHQ6 (KH type-2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000230 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy TrEMBL
Match: A0A6J1G4R4 (40S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111450719 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy TrEMBL
Match: A0A6J1FC65 (40S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444280 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. ExPASy TrEMBL
Match: A0A1S3CAV4 (40S ribosomal protein S3-2 OS=Cucumis melo OX=3656 GN=LOC103498727 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPTTP 203

[Close]
BLAST of Carg10794-RA vs. TAIR 10
Match: AT5G35530.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 374.0 bits (959), Expect = 7.6e-104
Identity = 188/203 (92.61%), Postives = 198/203 (97.54%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLG+KVKIMLDWDPKGKQGP  P
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTP 203

[Close]
BLAST of Carg10794-RA vs. TAIR 10
Match: AT2G31610.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 371.7 bits (953), Expect = 3.8e-103
Identity = 188/203 (92.61%), Postives = 196/203 (96.55%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVKIMLDWDP GK GP  P
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTP 203

[Close]
BLAST of Carg10794-RA vs. TAIR 10
Match: AT3G53870.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-102
Identity = 187/203 (92.12%), Postives = 195/203 (96.06%), Query Frame = 0 

Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
           EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 180
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 181 VLGIKVKIMLDWDPKGKQGPYHP 204
           VLGIKVK+MLDWDPKG  GP  P
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTP 203

The following BLAST results are available for this feature:
BLAST of Carg10794-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030498.11.3e-108100.0040S ribosomal protein S3-3, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022946744.12.2e-10599.0140S ribosomal protein S3-2-like [Cucurbita moschata][more]
XP_038890738.12.2e-10599.0140S ribosomal protein S3-2 [Benincasa hispida][more]
XP_022938091.12.2e-10599.0140S ribosomal protein S3-2-like [Cucurbita moschata][more]
KAG6586486.12.2e-10599.0140S ribosomal protein S3-1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg10794-RA vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJA61.1e-10292.6140S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1[more]
Q9SIP75.3e-10292.6140S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1[more]
Q9M3391.6e-10192.1240S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1[more]
P023501.3e-9286.2140S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2[more]
P478351.3e-9286.2140S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1[more]
BLAST of Carg10794-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HP951.1e-10599.0140S ribosomal protein S3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465403 PE=3... [more]
A0A0A0LHQ61.1e-10599.01KH type-2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000230 P... [more]
A0A6J1G4R41.1e-10599.0140S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111450719 PE... [more]
A0A6J1FC651.1e-10599.0140S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444280 PE... [more]
A0A1S3CAV41.1e-10599.0140S ribosomal protein S3-2 OS=Cucumis melo OX=3656 GN=LOC103498727 PE=3 SV=1[more]
BLAST of Carg10794-RA vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G35530.17.6e-10492.61Ribosomal protein S3 family protein [more]
AT2G31610.13.8e-10392.61Ribosomal protein S3 family protein [more]
AT3G53870.11.1e-10292.12Ribosomal protein S3 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 1..91
e-value: 1.3E-48
score: 164.8
IPR004044K Homology domain, type 2PFAMPF07650KH_2coord: 20..93
e-value: 7.8E-13
score: 48.1
IPR004044K Homology domain, type 2PROSITEPS50823KH_TYPE_2coord: 21..92
score: 11.333969
IPR036419Ribosomal protein S3, C-terminal domain superfamilyGENE3D3.30.1140.32coord: 93..205
e-value: 9.5E-59
score: 198.9
IPR036419Ribosomal protein S3, C-terminal domain superfamilySUPERFAMILY54821Ribosomal protein S3 C-terminal domaincoord: 93..191
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 106..188
e-value: 1.7E-25
score: 89.4
IPR005703Ribosomal protein S3, eukaryotic/archaealTIGRFAMTIGR01008TIGR01008coord: 8..191
e-value: 3.0E-70
score: 233.9
NoneNo IPR availablePANTHERPTHR11760:SF5240S RIBOSOMAL PROTEIN S3-RELATEDcoord: 3..203
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 3..203
NoneNo IPR availableCDDcd0241340S_S3_KHcoord: 15..95
e-value: 4.50846E-52
score: 160.466
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 147..183
IPR009019K homology domain superfamily, prokaryotic typeSUPERFAMILY54814Prokaryotic type KH domain (KH-domain type II)coord: 10..99

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg10794Carg10794gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg10794-RA:1Carg10794-RA:1exon
Carg10794-RA:2Carg10794-RA:2exon
Carg10794-RA:3Carg10794-RA:3exon
Carg10794-RA:4Carg10794-RA:4exon
Carg10794-RA:5Carg10794-RA:5exon
Carg10794-RA:6Carg10794-RA:6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg10794-RA:cdsCarg10794-RA:cdsCDS
Carg10794-RA:cdsCarg10794-RA:cds_2CDS
Carg10794-RA:cdsCarg10794-RA:cds_3CDS
Carg10794-RA:cdsCarg10794-RA:cds_4CDS
Carg10794-RA:cdsCarg10794-RA:cds_5CDS
Carg10794-RA:cdsCarg10794-RA:cds_6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg10794-RA:three_prime_utrCarg10794-RA:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg10794-RACarg10794-RA-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome