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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAATCTTGTGGGTCCATCTGAAATTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGTATGAAGATCATTATTATGGTCATTATGAATCACCATCATCCGCGCGGGGAATCGTTAAAGGAGACATCCCATCTGCTTTGCACTTGCAGGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGGTACTCAATACGGAGCTCTCTCTAATGTCTTTGTTTCTGTTTATTCCAATTACTTTGAACCGTTTTCCCATGGTTAATTCGAATGCTCTGAAGCCCCAACCTGTAATTTCCTCAATGATTGACTTCAAGATATCTAATTCTTATTCTGGGTATTGGTTTTCGATCTCTGTGAATTTGTGATTCAGTTTGTTCTAGGGCTGGGCAAGAAGATAA mRNA sequence ATGAATCTTGTGGGTCCATCTGAAATTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGTATGAAGATCATTATTATGGTCATTATGAATCACCATCATCCGCGCGGGGAATCGTTAAAGGAGACATCCCATCTGCTTTGCACTTGCAGGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGGGCTGGGCAAGAAGATAA Coding sequence (CDS) ATGAATCTTGTGGGTCCATCTGAAATTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGTATGAAGATCATTATTATGGTCATTATGAATCACCATCATCCGCGCGGGGAATCGTTAAAGGAGACATCCCATCTGCTTTGCACTTGCAGGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGGGCTGGGCAAGAAGATAA Protein sequence MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGSMKIIIMVIMNHHHPRGESLKETSHLLCTCRPFFNIFIVLCINIDQHLQKNRVRIFPRLQGWARR
Homology
BLAST of Carg09886-RA vs. NCBI nr
Match: KAG7023550.1 (hypothetical protein SDJN02_14576, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 225.3 bits (573), Expect = 2.4e-55 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 Query: 1 MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGSMKIIIMVIMNHHHPRGESLK 60 MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGSMKIIIMVIMNHHHPRGESLK Sbjct: 1 MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGSMKIIIMVIMNHHHPRGESLK 60
Query: 61 ETSHLLCTCRPFFNIFIVLCINIDQHLQKNRVRIFPRLQGWARR 105 ETSHLLCTCRPFFNIFIVLCINIDQHLQKNRVRIFPRLQGWARR Sbjct: 61 ETSHLLCTCRPFFNIFIVLCINIDQHLQKNRVRIFPRLQGWARR 104
BLAST of Carg09886-RA vs. NCBI nr
Match: KAG6589879.1 (hypothetical protein SDJN03_15302, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 87.8 bits (216), Expect = 6.0e-14 Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 0 Query: 1 MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGS 41 MNLVGPSE HPLSPKQTSPFPDRFTDEARPQMERRGKWGS Sbjct: 1 MNLVGPSEFHPLSPKQTSPFPDRFTDEARPQMERRGKWGS 40
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7023550.1 | 2.4e-55 | 100.00 | hypothetical protein SDJN02_14576, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6589879.1 | 6.0e-14 | 97.50 | hypothetical protein SDJN03_15302, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..33 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
Carg09886 | Carg09886 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Carg09886-RA:2 | Carg09886-RA:2 | exon |
Carg09886-RA:1 | Carg09886-RA:1 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Carg09886-RA:cds | Carg09886-RA:cds_2 | CDS |
Carg09886-RA:cds | Carg09886-RA:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Carg09886-RA | Carg09886-RA-protein | polypeptide |
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