Carg09886 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09886
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 2697823 .. 2698332 (-)
RNA-Seq ExpressionCarg09886
SyntenyCarg09886
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTTGTGGGTCCATCTGAAATTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGTATGAAGATCATTATTATGGTCATTATGAATCACCATCATCCGCGCGGGGAATCGTTAAAGGAGACATCCCATCTGCTTTGCACTTGCAGGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGGTACTCAATACGGAGCTCTCTCTAATGTCTTTGTTTCTGTTTATTCCAATTACTTTGAACCGTTTTCCCATGGTTAATTCGAATGCTCTGAAGCCCCAACCTGTAATTTCCTCAATGATTGACTTCAAGATATCTAATTCTTATTCTGGGTATTGGTTTTCGATCTCTGTGAATTTGTGATTCAGTTTGTTCTAGGGCTGGGCAAGAAGATAA

mRNA sequence

ATGAATCTTGTGGGTCCATCTGAAATTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGTATGAAGATCATTATTATGGTCATTATGAATCACCATCATCCGCGCGGGGAATCGTTAAAGGAGACATCCCATCTGCTTTGCACTTGCAGGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGGGCTGGGCAAGAAGATAA

Coding sequence (CDS)

ATGAATCTTGTGGGTCCATCTGAAATTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGTATGAAGATCATTATTATGGTCATTATGAATCACCATCATCCGCGCGGGGAATCGTTAAAGGAGACATCCCATCTGCTTTGCACTTGCAGGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGGGCTGGGCAAGAAGATAA

Protein sequence

MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGSMKIIIMVIMNHHHPRGESLKETSHLLCTCRPFFNIFIVLCINIDQHLQKNRVRIFPRLQGWARR
Homology
[Close]
BLAST of Carg09886 vs. NCBI nr
Match: KAG7023550.1 (hypothetical protein SDJN02_14576, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 2.4e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGSMKIIIMVIMNHHHPRGESLK 60
           MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGSMKIIIMVIMNHHHPRGESLK
Sbjct: 1   MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGSMKIIIMVIMNHHHPRGESLK 60

Query: 61  ETSHLLCTCRPFFNIFIVLCINIDQHLQKNRVRIFPRLQGWARR 105
           ETSHLLCTCRPFFNIFIVLCINIDQHLQKNRVRIFPRLQGWARR
Sbjct: 61  ETSHLLCTCRPFFNIFIVLCINIDQHLQKNRVRIFPRLQGWARR 104

[Close]
BLAST of Carg09886 vs. NCBI nr
Match: KAG6589879.1 (hypothetical protein SDJN03_15302, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 6.0e-14
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 1  MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGS 41
          MNLVGPSE HPLSPKQTSPFPDRFTDEARPQMERRGKWGS
Sbjct: 1  MNLVGPSEFHPLSPKQTSPFPDRFTDEARPQMERRGKWGS 40

The following BLAST results are available for this feature:
BLAST of Carg09886 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023550.12.4e-55100.00hypothetical protein SDJN02_14576, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6589879.16.0e-1497.50hypothetical protein SDJN03_15302, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg09886 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09886 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09886 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09886-RACarg09886-RAmRNA