Carg08933-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08933-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 9562860 .. 9563567 (-)
Sequence length198
RNA-Seq ExpressionCarg08933-RA
SyntenyCarg08933-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAAGGTGGACAATATCATACCTTTTGGGGAAAGAGCTTATGCTCAAAGTGCCTTTTGGGTAAGCCCAAGAGCTAATGCACAAACTGGACAATATCATACCTTTTGGGAAAGTCCAAGAACTTATGCTCAAAGTGGACGATATCATACCATTGACGAGGCTTTTTGGGGAAGCCTAATATCATAACATTGATGAGGCCTTTTGAGAAGTCAAAGAACTTATGTTTAAAGTAGATGATATCATACTGGAGAATCATGTTCATCTAACCATTACATTCTCAATTATATATTTAAATGAGTTGAAATATAATAAAGCTTCTGAATTGAAAAAATTCACATTTTTTTACTTTTTAAAATTTATTTGTTCCATGAACTTGAACCTCAAAAAGGTTAAAATAACTAAATAAAAAATAAAAATGGGAATGTGAGCAGTTTAGTGAACAATAATTATAAACATATAATTCACATTGCAAGTAAATAAAATAAAATAATAATAATAATAATAATAATAAAAAAACTTATGGTCATCTATCAATTCCACGTATTCATGCTGGGCTTGTTTTCCCGCCAGGTTACCGTACTTTCTACTGGCCCAAGGGCTCAGACAAAGGAGAGAGAGGCCCAAATGAAGCCAGCCGACTCATTTGCCGGTCCTCTTTACCATCCTCCTCGACGTGAGAGCTGTGCAATTTTCAGCGATCGTTAA

mRNA sequence

ATGCTCAAGGTGGACAATATCATACCTTTTGGGGAAAGAGCTTATGCTCAAAGTGCCTTTTGGGTTACCGTACTTTCTACTGGCCCAAGGGCTCAGACAAAGGAGAGAGAGGCCCAAATGAAGCCAGCCGACTCATTTGCCGGTCCTCTTTACCATCCTCCTCGACGTGAGAGCTGTGCAATTTTCAGCGATCGTTAA

Coding sequence (CDS)

ATGCTCAAGGTGGACAATATCATACCTTTTGGGGAAAGAGCTTATGCTCAAAGTGCCTTTTGGGTTACCGTACTTTCTACTGGCCCAAGGGCTCAGACAAAGGAGAGAGAGGCCCAAATGAAGCCAGCCGACTCATTTGCCGGTCCTCTTTACCATCCTCCTCGACGTGAGAGCTGTGCAATTTTCAGCGATCGTTAA

Protein sequence

MLKVDNIIPFGERAYAQSAFWVTVLSTGPRAQTKEREAQMKPADSFAGPLYHPPRRESCAIFSDR
Homology
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BLAST of Carg08933-RA vs. NCBI nr
Match: KAG7036284.1 (hypothetical protein SDJN02_03087, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 4.1e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MLKVDNIIPFGERAYAQSAFWVTVLSTGPRAQTKEREAQMKPADSFAGPLYHPPRRESCA 60
          MLKVDNIIPFGERAYAQSAFWVTVLSTGPRAQTKEREAQMKPADSFAGPLYHPPRRESCA
Sbjct: 1  MLKVDNIIPFGERAYAQSAFWVTVLSTGPRAQTKEREAQMKPADSFAGPLYHPPRRESCA 60

Query: 61 IFSDR 66
          IFSDR
Sbjct: 61 IFSDR 65

The following BLAST results are available for this feature:
BLAST of Carg08933-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036284.14.1e-29100.00hypothetical protein SDJN02_03087, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg08933-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08933-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08933-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..52

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg08933Carg08933gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg08933-RA:1Carg08933-RA:1exon
Carg08933-RA:2Carg08933-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg08933-RA:cdsCarg08933-RA:cds_2CDS
Carg08933-RA:cdsCarg08933-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg08933-RACarg08933-RA-proteinpolypeptide