Carg08933 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08933
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 9562860 .. 9563567 (-)
RNA-Seq Expression	Carg08933
Synteny	Carg08933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAAGGTGGACAATATCATACCTTTTGGGGAAAGAGCTTATGCTCAAAGTGCCTTTTGGGTAAGCCCAAGAGCTAATGCACAAACTGGACAATATCATACCTTTTGGGAAAGTCCAAGAACTTATGCTCAAAGTGGACGATATCATACCATTGACGAGGCTTTTTGGGGAAGCCTAATATCATAACATTGATGAGGCCTTTTGAGAAGTCAAAGAACTTATGTTTAAAGTAGATGATATCATACTGGAGAATCATGTTCATCTAACCATTACATTCTCAATTATATATTTAAATGAGTTGAAATATAATAAAGCTTCTGAATTGAAAAAATTCACATTTTTTTACTTTTTAAAATTTATTTGTTCCATGAACTTGAACCTCAAAAAGGTTAAAATAACTAAATAAAAAATAAAAATGGGAATGTGAGCAGTTTAGTGAACAATAATTATAAACATATAATTCACATTGCAAGTAAATAAAATAAAATAATAATAATAATAATAATAATAAAAAAACTTATGGTCATCTATCAATTCCACGTATTCATGCTGGGCTTGTTTTCCCGCCAGGTTACCGTACTTTCTACTGGCCCAAGGGCTCAGACAAAGGAGAGAGAGGCCCAAATGAAGCCAGCCGACTCATTTGCCGGTCCTCTTTACCATCCTCCTCGACGTGAGAGCTGTGCAATTTTCAGCGATCGTTAA

mRNA sequence

ATGCTCAAGGTGGACAATATCATACCTTTTGGGGAAAGAGCTTATGCTCAAAGTGCCTTTTGGGTTACCGTACTTTCTACTGGCCCAAGGGCTCAGACAAAGGAGAGAGAGGCCCAAATGAAGCCAGCCGACTCATTTGCCGGTCCTCTTTACCATCCTCCTCGACGTGAGAGCTGTGCAATTTTCAGCGATCGTTAA

Coding sequence (CDS)

ATGCTCAAGGTGGACAATATCATACCTTTTGGGGAAAGAGCTTATGCTCAAAGTGCCTTTTGGGTTACCGTACTTTCTACTGGCCCAAGGGCTCAGACAAAGGAGAGAGAGGCCCAAATGAAGCCAGCCGACTCATTTGCCGGTCCTCTTTACCATCCTCCTCGACGTGAGAGCTGTGCAATTTTCAGCGATCGTTAA

Protein sequence

MLKVDNIIPFGERAYAQSAFWVTVLSTGPRAQTKEREAQMKPADSFAGPLYHPPRRESCAIFSDR

Homology

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BLAST of Carg08933 vs. NCBI nr
Match: KAG7036284.1 (hypothetical protein SDJN02_03087, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 4.1e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLKVDNIIPFGERAYAQSAFWVTVLSTGPRAQTKEREAQMKPADSFAGPLYHPPRRESCA 60
          MLKVDNIIPFGERAYAQSAFWVTVLSTGPRAQTKEREAQMKPADSFAGPLYHPPRRESCA
Sbjct: 1  MLKVDNIIPFGERAYAQSAFWVTVLSTGPRAQTKEREAQMKPADSFAGPLYHPPRRESCA 60

Query: 61 IFSDR 66
          IFSDR
Sbjct: 61 IFSDR 65

The following BLAST results are available for this feature:

BLAST of Carg08933 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036284.1	4.1e-29	100.00	hypothetical protein SDJN02_03087, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg08933 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08933 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08933 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08933-RA	Carg08933-RA	mRNA