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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CTTACGTCGTTTCCCCACCGTGTGGTCGGCGAAGCTATACGCCGTCAAGTTCTTTCCCAACACCGTCAAACCCCACAGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCATAAGAACAATAAAACCCCTCCCCCCTTCATCGTCCCTTTTTCAACATCATCCCCTTCGATTCTTTACTGCTATCTCTCAAAACTTCTTCCCTTAATTCATCACCAAAAATCCACAATCAGAATCGCAATCTTGTCGACTTTGATCCTTAAATCTCCGGTAAGAATCGAATCCCCCCTGTTCATACTCTGTTCTGTTCTCATTTCTCGCCTCTTTGTTGTTGATTCATGAGGTTTTGGAAGTGTTTATGAGATCGGGAATTGATCTTTTTTTGTTTCGTTTTGTCGCATCTTGTTTGAATCAAGCAAAGAGCTTATGCCATTCTTGTTTGTTTGTTTGATCACAGGTTGATTTTTGTTCTTCTTTTGTGTGA mRNA sequence CTTACGTCGTTTCCCCACCGTGTGGTCGGCGAAGCTATACGCCGTCAAGTTCTTTCCCAACACCGTCAAACCCCACAGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCATAAGAACAATAAAACCCCTCCCCCCTTCATCGTCCCTTTTTCAACATCATCCCCTTCGATTCTTTACTGCTATCTCTCAAAACTTCTTCCCTTAATTCATCACCAAAAATCCACAATCAGAATCGCAATCTTGTCGACTTTGATCCTTAAATCTCCGGTTGATTTTTGTTCTTCTTTTGTGTGA Coding sequence (CDS) CTTACGTCGTTTCCCCACCGTGTGGTCGGCGAAGCTATACGCCGTCAAGTTCTTTCCCAACACCGTCAAACCCCACAGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCATAAGAACAATAAAACCCCTCCCCCCTTCATCGTCCCTTTTTCAACATCATCCCCTTCGATTCTTTACTGCTATCTCTCAAAACTTCTTCCCTTAATTCATCACCAAAAATCCACAATCAGAATCGCAATCTTGTCGACTTTGATCCTTAAATCTCCGGTTGATTTTTGTTCTTCTTTTGTGTGA Protein sequence LTSFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPSILYCYLSKLLPLIHHQKSTIRIAILSTLILKSPVDFCSSFV
Homology
BLAST of Carg05656-RA vs. NCBI nr
Match: KAG7015226.1 (hypothetical protein SDJN02_22859, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 198.0 bits (502), Expect = 3.9e-47 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query: 1 LTSFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPSIL 60
LTSFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPSIL
Sbjct: 1 LTSFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPSIL 60
Query: 61 YCYLSKLLPLIHHQKSTIRIAILSTLILKSPVDFCSSFV 100
YCYLSKLLPLIHHQKSTIRIAILSTLILKSPVDFCSSFV
Sbjct: 61 YCYLSKLLPLIHHQKSTIRIAILSTLILKSPVDFCSSFV 99
BLAST of Carg05656-RA vs. NCBI nr
Match: KAE8650678.1 (hypothetical protein Csa_010607, partial [Cucumis sativus]) HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10 Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 0
Query: 3 SFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPS 59
SFPHRVVGE RRQVLS R +P+YNNDL +VTV S +NNKTP PFI FS +PS
Sbjct: 20 SFPHRVVGEVFRRQVLSNLRHSPRYNNDLLSVTVNSRQNNKTPLPFISIFSNINPS 75
BLAST of Carg05656-RA vs. ExPASy TrEMBL
Match: A0A0A0LBC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G405520 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 8.3e-11 Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 0
Query: 3 SFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPS 59
SFPHRVVGE RRQVLS R +P+YNNDL +VTV S +NNKTP PFI FS +PS
Sbjct: 20 SFPHRVVGEVFRRQVLSNLRHSPRYNNDLLSVTVNSRQNNKTPLPFISIFSNINPS 75
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7015226.1 | 3.9e-47 | 100.00 | hypothetical protein SDJN02_22859, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAE8650678.1 | 1.7e-10 | 67.86 | hypothetical protein Csa_010607, partial [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LBC3 | 8.3e-11 | 67.86 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G405520 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg05656 | Carg05656 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg05656-RA:1 | Carg05656-RA:1 | exon |
| Carg05656-RA:2 | Carg05656-RA:2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg05656-RA:cds | Carg05656-RA:cds | CDS |
| Carg05656-RA:cds | Carg05656-RA:cds_2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg05656-RA | Carg05656-RA-protein | polypeptide |
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