Carg05656 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05656
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 3612519 .. 3613005 (+)
RNA-Seq ExpressionCarg05656
SyntenyCarg05656
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTACGTCGTTTCCCCACCGTGTGGTCGGCGAAGCTATACGCCGTCAAGTTCTTTCCCAACACCGTCAAACCCCACAGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCATAAGAACAATAAAACCCCTCCCCCCTTCATCGTCCCTTTTTCAACATCATCCCCTTCGATTCTTTACTGCTATCTCTCAAAACTTCTTCCCTTAATTCATCACCAAAAATCCACAATCAGAATCGCAATCTTGTCGACTTTGATCCTTAAATCTCCGGTAAGAATCGAATCCCCCCTGTTCATACTCTGTTCTGTTCTCATTTCTCGCCTCTTTGTTGTTGATTCATGAGGTTTTGGAAGTGTTTATGAGATCGGGAATTGATCTTTTTTTGTTTCGTTTTGTCGCATCTTGTTTGAATCAAGCAAAGAGCTTATGCCATTCTTGTTTGTTTGTTTGATCACAGGTTGATTTTTGTTCTTCTTTTGTGTGA

mRNA sequence

CTTACGTCGTTTCCCCACCGTGTGGTCGGCGAAGCTATACGCCGTCAAGTTCTTTCCCAACACCGTCAAACCCCACAGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCATAAGAACAATAAAACCCCTCCCCCCTTCATCGTCCCTTTTTCAACATCATCCCCTTCGATTCTTTACTGCTATCTCTCAAAACTTCTTCCCTTAATTCATCACCAAAAATCCACAATCAGAATCGCAATCTTGTCGACTTTGATCCTTAAATCTCCGGTTGATTTTTGTTCTTCTTTTGTGTGA

Coding sequence (CDS)

CTTACGTCGTTTCCCCACCGTGTGGTCGGCGAAGCTATACGCCGTCAAGTTCTTTCCCAACACCGTCAAACCCCACAGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCATAAGAACAATAAAACCCCTCCCCCCTTCATCGTCCCTTTTTCAACATCATCCCCTTCGATTCTTTACTGCTATCTCTCAAAACTTCTTCCCTTAATTCATCACCAAAAATCCACAATCAGAATCGCAATCTTGTCGACTTTGATCCTTAAATCTCCGGTTGATTTTTGTTCTTCTTTTGTGTGA

Protein sequence

LTSFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPSILYCYLSKLLPLIHHQKSTIRIAILSTLILKSPVDFCSSFV
Homology
[Close]
BLAST of Carg05656 vs. NCBI nr
Match: KAG7015226.1 (hypothetical protein SDJN02_22859, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.0 bits (502), Expect = 3.9e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   LTSFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPSIL 60
           LTSFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPSIL
Sbjct: 1   LTSFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPSIL 60

Query: 61  YCYLSKLLPLIHHQKSTIRIAILSTLILKSPVDFCSSFV 100
           YCYLSKLLPLIHHQKSTIRIAILSTLILKSPVDFCSSFV
Sbjct: 61  YCYLSKLLPLIHHQKSTIRIAILSTLILKSPVDFCSSFV 99

[Close]
BLAST of Carg05656 vs. NCBI nr
Match: KAE8650678.1 (hypothetical protein Csa_010607, partial [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 3  SFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPS 59
          SFPHRVVGE  RRQVLS  R +P+YNNDL +VTV S +NNKTP PFI  FS  +PS
Sbjct: 20 SFPHRVVGEVFRRQVLSNLRHSPRYNNDLLSVTVNSRQNNKTPLPFISIFSNINPS 75

[Close]
BLAST of Carg05656 vs. ExPASy TrEMBL
Match: A0A0A0LBC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G405520 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.3e-11
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 3  SFPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFSTSSPS 59
          SFPHRVVGE  RRQVLS  R +P+YNNDL +VTV S +NNKTP PFI  FS  +PS
Sbjct: 20 SFPHRVVGEVFRRQVLSNLRHSPRYNNDLLSVTVNSRQNNKTPLPFISIFSNINPS 75

The following BLAST results are available for this feature:
BLAST of Carg05656 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015226.13.9e-47100.00hypothetical protein SDJN02_22859, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8650678.11.7e-1067.86hypothetical protein Csa_010607, partial [Cucumis sativus][more]
BLAST of Carg05656 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05656 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBC38.3e-1167.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G405520 PE=4 SV=1[more]
BLAST of Carg05656 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05656-RACarg05656-RAmRNA