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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGTATGCCCTCCTGGATGGTTTAGTAATAATAAGTACGTACAATTTCATTCTTTCTGTTACAGACAGCTGAATGAATGTACCGTTTTTTCCCCTTGGATATTATGTAAATTATGAAATAGCAAATTAATAATTATTATTTCGGATGAATAAAGAAATAAAGAGATTGCACTTGTATAAATATTTCTACCTTCGATTTATGAATTTTATGTTCAATAATTAAATACCAATTATTTTAGAAGAAGCAAAAACAAAATTTAAAAAAGAAAACCATAAATCTCTTTTTTTTTTAATTAATTAATTAGTTAATTATTAATTTTTTTTTTTCTCAAGGTCAATTACTTAAAAGAAAACCATTATTTTTTTAAGGTCAATTACTTAAAAGAAAAATATAAATCTCTTTTTTTTTTCTTTTTTTTTTAAAAATTAATTAATTAGTTAATTATTATTATTATTTCAAGTCAATTACTTATATTTGCTATGGATACAATGTTGAATGGCTTTGGTGCATTCCTTTACGACCCAAATATCGAACGAACTGCTACCGATGGCCAAACCCCTAGCAGGGTTCCCAAGAGCTATCTCATCTCGTCTGTTTTTTTAATCATTCCAACTCATGTAATCATCATAATTATAAGACTTCCGACTACTACGATATTAGGCGTAACTCTGTTAATTGAGACAAGTTTGTTAATTGAGACAAGTTTATTGCCCCAAACAAACTCTACGTAATAACACACATATCATCTATAATATATAAAAAGTCTAATTTTATATTTAAATATTTAAAATATATTATTTGTATTTAAATATAATTTTATATTTAAACATTTTATTTGTAGATAAAATTCTAGTATTTAAAATCAAATAAATTAAATTCTAATTTTCTTACTAAATTTGTAATATATATATAAAAAGTCTAGGTCAGCATGGCATATCTGAAAATATGGCTTCAACGCAGGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA mRNA sequence ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA Coding sequence (CDS) ATGGTCGGACTTTGGCTGACTACAACATTCAGAAGTCTACCCTCCGCCTTGTCCTCCACCTGCACGGTGGCTTTTAGGTGGCTCCGATATGTCGATGACTTCCTATTATTACTGGATTTGTGGTGTCTTCGGCATTTTCATAAGGCTATAGTCGAAAAAACCTTATCCGACCGGAGGAAACACGGTTCGGCCCGGTTTTTGATATATAGAAGACTTGCAGAAAGCTCTAACGGCGTCGTATTCGCCGCACCTCCGACTTCTTCTTCATTACTGTTTCGTTCGCGTTCTTTGTTCATTCTCCTCGGCGATCTTCAGTTCCCAAGCACCAATTTCTAA Protein sequence MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRKHGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF
Homology
BLAST of Carg05645-RA vs. NCBI nr
Match: KAG7015215.1 (hypothetical protein SDJN02_22848, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query: 1 MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK 60
MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK
Sbjct: 1 MVGLWLTTTFRSLPSALSSTCTVAFRWLRYVDDFLLLLDLWCLRHFHKAIVEKTLSDRRK 60
Query: 61 HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF 112
HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF
Sbjct: 61 HGSARFLIYRRLAESSNGVVFAAPPTSSSLLFRSRSLFILLGDLQFPSTNF 111
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7015215.1 | 1.3e-54 | 100.00 | hypothetical protein SDJN02_22848, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg05645 | Carg05645 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg05645-RA:1 | Carg05645-RA:1 | exon |
| Carg05645-RA:2 | Carg05645-RA:2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg05645-RA:cds | Carg05645-RA:cds_2 | CDS |
| Carg05645-RA:cds | Carg05645-RA:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg05645-RA | Carg05645-RA-protein | polypeptide |
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