Carg05130-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05130-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Signaling peptide TAXIMIN 2
Location	Carg_Chr07: 3078020 .. 3078606 (-)
Sequence length	498
RNA-Seq Expression	Carg05130-RA
Synteny	Carg05130-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAAAACGAACGAACGAACCGGCGTGGAATCTCCGTCAACGCTTCAAAATCAAAGAAAAGTCGCCGCTTACCATATGCAACGCGCACGAAGCTTCCCAAAACTACCCCACGACTATTCCAATTCCCAGATCCATTGGGCACCATCTTGAAGGGCAGAGAAGTCAATCCATTCACCAAAGTGCGCGGCGGCGGTGGTGGGGGGCTGCAGTTGTGCGAAGAAAGTCTATAAATCTCGACATTGAATCTGAGTAAGCGAGGAAGAAAGACACAAAGATGGGCGATTGCAGGCCATTAGGGTTCTTGCTGGGGCTGCCATTTGCGTTGGTTGCGTTGGTTTTATCTGTTGTTGGGGCCGTAATTTGGATCATCGGGTGAGTTCTTCTTTATCACTTGGTTTGTTGCTTATTCTGAACTGATGAATTTGACAAGAACTGAAGCGATGGCGCTGTTTTTGTTGCAGATCTGTGCTGAGTTGCCTCTGCCCATGTTGCGTGTGCTGTGCGGGGCTTGCGAATCTGGCGATGGGGCTTATCAAGCTGCCGGTGAAGGTGCTCCGATGGTTCACTCACCAAATACCCTGTTAG

mRNA sequence

AAATTAAAACGAACGAACGAACCGGCGTGGAATCTCCGTCAACGCTTCAAAATCAAAGAAAAGTCGCCGCTTACCATATGCAACGCGCACGAAGCTTCCCAAAACTACCCCACGACTATTCCAATTCCCAGATCCATTGGGCACCATCTTGAAGGGCAGAGAAGTCAATCCATTCACCAAAGTGCGCGGCGGCGGTGGTGGGGGGCTGCAGTTGTGCGAAGAAAGTCTATAAATCTCGACATTGAATCTGAGTAAGCGAGGAAGAAAGACACAAAGATGGGCGATTGCAGGCCATTAGGGTTCTTGCTGGGGCTGCCATTTGCGTTGGTTGCGTTGGTTTTATCTGTTGTTGGGGCCGTAATTTGGATCATCGGATCTGTGCTGAGTTGCCTCTGCCCATGTTGCGTGTGCTGTGCGGGGCTTGCGAATCTGGCGATGGGGCTTATCAAGCTGCCGGTGAAGGTGCTCCGATGGTTCACTCACCAAATACCCTGTTAG

Coding sequence (CDS)

ATGGGCGATTGCAGGCCATTAGGGTTCTTGCTGGGGCTGCCATTTGCGTTGGTTGCGTTGGTTTTATCTGTTGTTGGGGCCGTAATTTGGATCATCGGATCTGTGCTGAGTTGCCTCTGCCCATGTTGCGTGTGCTGTGCGGGGCTTGCGAATCTGGCGATGGGGCTTATCAAGCTGCCGGTGAAGGTGCTCCGATGGTTCACTCACCAAATACCCTGTTAG

Protein sequence

MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLPVKVLRWFTHQIPC

Homology

[Close]

BLAST of Carg05130-RA vs. NCBI nr
Match: XP_022947063.1 (uncharacterized protein LOC111451049 [Cucurbita moschata] >XP_022971146.1 uncharacterized protein LOC111469907 [Cucurbita maxima] >XP_023533943.1 uncharacterized protein LOC111795637 [Cucurbita pepo subsp. pepo] >KAG6604889.1 Signaling peptide TAXIMIN 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026972.1 hypothetical protein SDJN02_10980 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 9.0e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. NCBI nr
Match: XP_022140637.1 (uncharacterized protein LOC111011246 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 7.6e-32
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCC+CCAGLAN+A+GL+KLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCICCAGLANMAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. NCBI nr
Match: XP_038902116.1 (signaling peptide TAXIMIN 2 [Benincasa hispida])

HSP 1 Score: 142.1 bits (357), Expect = 1.9e-30
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFALVALVLSV+GAVIWIIGSVLSCLCPCCVC AG+ANLA+GL+KLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVIGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          +KVLRWFTHQIPC
Sbjct: 61 IKVLRWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. NCBI nr
Match: XP_012088216.1 (signaling peptide TAXIMIN 2 [Jatropha curcas] >KDP24081.1 hypothetical protein JCGZ_25738 [Jatropha curcas])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 65/73 (89.04%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFAL+ALVLSVVGAV+WIIG++LSCLCPCCVCCAGLANLA+ LIKLP
Sbjct: 1  MGDCRPLGFLLGLPFALIALVLSVVGAVVWIIGTILSCLCPCCVCCAGLANLAVDLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          +KVL+WFTHQIPC
Sbjct: 61 IKVLKWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. NCBI nr
Match: XP_008455953.1 (PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo] >XP_031736938.1 signaling peptide TAXIMIN 2 [Cucumis sativus] >KGN63199.1 hypothetical protein Csa_022433 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFALVALVLS+VGAVIWIIGSVLSCLCPCCVC AG+ANLA+GL+KLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSLVGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-29
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFL+GLPFALVALVL++VGAVIWIIG+VLSCLCPCC C A LAN A+ LIKLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          +KVLRWFTH IPC
Sbjct: 61 IKVLRWFTHSIPC 73

[Close]

BLAST of Carg05130-RA vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-22
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 2  GDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLPV 61
          GDCRPLGFLLGLPFA ++L+LS++G +IWI+G +LSC+CPCC+C   L  +A+GLIK P+
Sbjct: 4  GDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPI 63

Query: 62 KVLRWFTHQIPC 74
           V+ WF  +IPC
Sbjct: 64 HVMEWFMSKIPC 75

[Close]

BLAST of Carg05130-RA vs. ExPASy TrEMBL
Match: A0A6J1I2I0 (uncharacterized protein LOC111469907 OS=Cucurbita maxima OX=3661 GN=LOC111469907 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.3e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. ExPASy TrEMBL
Match: A0A6J1G5K6 (uncharacterized protein LOC111451049 OS=Cucurbita moschata OX=3662 GN=LOC111451049 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.3e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. ExPASy TrEMBL
Match: A0A6J1CHL1 (uncharacterized protein LOC111011246 OS=Momordica charantia OX=3673 GN=LOC111011246 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCC+CCAGLAN+A+GL+KLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCICCAGLANMAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. ExPASy TrEMBL
Match: A0A067JJD4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25738 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 65/73 (89.04%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFAL+ALVLSVVGAV+WIIG++LSCLCPCCVCCAGLANLA+ LIKLP
Sbjct: 1  MGDCRPLGFLLGLPFALIALVLSVVGAVVWIIGTILSCLCPCCVCCAGLANLAVDLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          +KVL+WFTHQIPC
Sbjct: 61 IKVLKWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. ExPASy TrEMBL
Match: A0A0A0LQ97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408940 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFLLGLPFALVALVLS+VGAVIWIIGSVLSCLCPCCVC AG+ANLA+GL+KLP
Sbjct: 1  MGDCRPLGFLLGLPFALVALVLSLVGAVIWIIGSVLSCLCPCCVCFAGIANLAVGLVKLP 60

Query: 61 VKVLRWFTHQIPC 74
          VKVLRWFTHQIPC
Sbjct: 61 VKVLRWFTHQIPC 73

[Close]

BLAST of Carg05130-RA vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-30
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLP 60
          MGDCRPLGFL+GLPFALVALVL++VGAVIWIIG+VLSCLCPCC C A LAN A+ LIKLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLP 60

Query: 61 VKVLRWFTHQIPC 74
          +KVLRWFTH IPC
Sbjct: 61 IKVLRWFTHSIPC 73

[Close]

BLAST of Carg05130-RA vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-23
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 2  GDCRPLGFLLGLPFALVALVLSVVGAVIWIIGSVLSCLCPCCVCCAGLANLAMGLIKLPV 61
          GDCRPLGFLLGLPFA ++L+LS++G +IWI+G +LSC+CPCC+C   L  +A+GLIK P+
Sbjct: 4  GDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPI 63

Query: 62 KVLRWFTHQIPC 74
           V+ WF  +IPC
Sbjct: 64 HVMEWFMSKIPC 75

The following BLAST results are available for this feature:

BLAST of Carg05130-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947063.1	9.0e-33	100.00	uncharacterized protein LOC111451049 [Cucurbita moschata] >XP_022971146.1 unchar...	[more]
XP_022140637.1	7.6e-32	94.52	uncharacterized protein LOC111011246 [Momordica charantia]	[more]
XP_038902116.1	1.9e-30	91.78	signaling peptide TAXIMIN 2 [Benincasa hispida]	[more]
XP_012088216.1	2.4e-30	89.04	signaling peptide TAXIMIN 2 [Jatropha curcas] >KDP24081.1 hypothetical protein J...	[more]
XP_008455953.1	2.4e-30	93.15	PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo] >XP_031736938.1 s...	[more]

BLAST of Carg05130-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G309	2.1e-29	83.56	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]
O82275	4.3e-22	61.11	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]

BLAST of Carg05130-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2I0	4.3e-33	100.00	uncharacterized protein LOC111469907 OS=Cucurbita maxima OX=3661 GN=LOC111469907...	[more]
A0A6J1G5K6	4.3e-33	100.00	uncharacterized protein LOC111451049 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1CHL1	3.7e-32	94.52	uncharacterized protein LOC111011246 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A067JJD4	1.2e-30	89.04	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25738 PE=4 SV=1	[more]
A0A0A0LQ97	1.2e-30	93.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408940 PE=4 SV=1	[more]

BLAST of Carg05130-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20562.1	1.5e-30	83.56	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT2G31090.1	3.1e-23	61.11	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..73
None	No IPR available	PANTHER	PTHR33834:SF11	SUBFAMILY NOT NAMED	coord: 1..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05130	Carg05130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05130-RA:2	Carg05130-RA:2	exon
Carg05130-RA:1	Carg05130-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05130-RA:cds	Carg05130-RA:cds_2	CDS
Carg05130-RA:cds	Carg05130-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05130-RA:five_prime_utr	Carg05130-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05130-RA	Carg05130-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane