Carg05038-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05038-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr08: 1199436 .. 1204287 (+)
Sequence length	279
RNA-Seq Expression	Carg05038-RA
Synteny	Carg05038-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACCCATATTTTCAAAGGCCCCTTCTTCATCGTCTTCTTCATGTCCAGCCCACTACTCGCAGAGGTCGCATAGTCCCCCATTTTCAACTCCATCGAACCAACCTCGACGTTGGAGACTCAGTGTGACGGAAATTAGGGACAAATAGGGTTTCTCAACGATGCTTCATGGCTGACATTTGCAGGGACGTGCTGTGTTTTTGCCCAATTTTCATTCCATTTTAATTCACCCAACCATTTCCCTCGCACAAAACCCTAGGGCACACCAAGCTGAGGGAATCAACTCTCCGGGTTCTCCAATAATAGCCCTACTACCTTCCAATTTCATCACTCTCTTCGAAATTCAGGTGATTATTGTGTTTCTTGTTGCTTCCCGGTTCAATTTGTGAAACCCTAGAATTTTAAATTTGGGGATTTTCCTGGGGTGCAATGATTCTGTGTTATTCTACCTTAGGGGTTTTAATGGCCGCATGATTGTGTTTCGTATGTGTCATGCATTGTTATTGTGTGCATCGAGGTTAGTGTTGCAACCTTGTTGATTCATGATTAATAGCCATGGGCACGAAAATTTATCGTGCTTTGATGCATATGAATAGAAAATTTCGTCGAGTTTGTTCGAATGGTAGGTTTATTGTTTCTGAAGCTTCATTTTATCCGTCGTGGACACGCTCGTTTGGGAATTTACAAGACAATCAGTTGCAGCTGCCATGCTGTAGCGGGCACTGTAGCTGGTTTTCATATTTCACGTAACTCATGTCTTGCCTCCTAATAATTAATTTAATCTATTTAGTTAATTCACTTATTGTCTTTTAGTTGGTTCTTCTAATTCTTGTTTCTTAGAATTCTACCTTCGCCCAAATCATTTTGTGTTTGTGCATGCTCAGTACTGATATATTTTTACTTTTAGCTATTTAAATCCATGGTGTTGCGCTTAGAACAGCTCAGTCGTGTTTTGTTCTTTTGCTATGTGTGCGTTTCCTGTTAGAGGGTAGATATCTTAAGGTTCTGCCCAAATTAGACTTGGTAAAAGGATGGGACACATTGTTTTTTTTTTTGATAAGAAGAACGAGACACATTATAAATCTTGGAACTCAAATCTAAGTTGGTTAAGTACCCTTCTCTCTTCCATGGATTGACCTAGTGATCTTTAAGGCCAATTAAAAAGTGTAAATGGTTTAGGGGATGGGTTCAAACCTTGATTGGTACCTATCTCGGATTTATATTTTTCAAGTTTCCTTGGCAACTAAATGTAGAAAGTTAGGTGGTTGTCCTTTGACATTAGTTGAAGTGTGCTTAAGTTGGCATCGACACTTGTTGATATCTAGAATAGAGAAAAGGTACCTATTGGCTCTTTGAAGTTTTTGTGAAATCTATTTGATAATTTCGAGGGTGAAGTAGATTGCCAAAAACATATAGATGTCAGAGCACTTGGTCTAACATTACGAGCTTCAGCTTTAGAATATCTTTCAGTTCATTGATTGTCTGTATAGTGGATTGGAATTGAGTTTTTGGGATCAGAAGAAACTTTTTCAAGCAGAGTTTTATGTGATGGAAAATGAAGATGTTCTTCATAAGATGGTTGAGATCTTAAGAGACTAGTTATTTGTACAAGAATACAGTTCTTCGGCACTTGAAGATTTTCTTTGAATTGTGACTCAGCCAATATACCACTATGCATATGTTGCAGTGGTTGTTGGCATTTTTGTTCTTGGGCTGTTTCTGATAACCCGAGTAAGTGAAAAAGTTGTTAGAAAAGTTGAAAGTCTTTAGAGGCTTTTCTTTTGAGGATGGACAGAGGGAAGAAAGCAATCGTTTAATCCATTCCTTGCCTTGGTTAGCTGACAGGCTTGGAGAGGTCATTGCTGGTGCTATTATTCTTCTTCCCAACAGCATGCAAGCTTTTCCTGTGTTTGAGTCAAGCAAGAAAGCCACAGGTTTTTTGTTGAATTTTTTTTGCCCAGATTCTTCCTTAAAGCTATTTTTGACGCTTAATTCTGTGATGGGAGGTACATTGGAATTTTATAGCTGTTTGTTTGGTTGTAGATTGGAGTGTGCTTCTATATTAGTGTCTGGTGGTGGGGATTTTCTCTACCTTGGACCCTAAGTTTTTATTGTTGATATTTTTCTCTTTATACATCTCTTTCTAAAAATTGTTGGTTAACTTACCATTTTGGTCCATATACTTTGAATTTCAATCTATTTCAGTTTCTGTACTTTCAAATGTCCAAATTAAGTCACGTACTTTCAATAAAGCTTAAAATTGATCCCTATTGTTTGTTATTTGTTACTTTTCTAAAAAACTAGTCTCTGTTTACCTTCTCTCTATAAATTTTGGTAGTATGTTCACATTTTTGTCTTTTCCTACATAAAAATTATTATTATTATTTAACTGATTTTGGGTAACAATTAACTTCAAACTTATGATAGAGACTAGTTTTAAGATTTAATGAAAGTACAAAGACTACCGGAAGTTCGTAGACCAAAATGGTATTTTAACCAAAAATGTTGCATTATTTTCTTTCCGTAGAAAAAGATATTGGATTCTTTATGTCAATGTTCTACCACTTGTATGGAGGGAATGATACCTATAGGTTTTCTTTGTACAAGATGTGAAGATCTTCTTTGTTGGGATATGTAGTTTTGACTTTAACCACCAGTAGCGAAAGGAGCAAGCTGCAGATTGGGTTGGCCACTCATCTAGAATTTAAAGTATATAATATTCTTCTAATTTTTAGACAGTTGTTGTGGAATGAATTAGGTGATTGTCTCATGAGAACTATTGAATGTGTGCACTCACAAAGTGGTTTGGCACTCAGTCATAAACAAAAGAGTAGCTTTGTATGTATCAAGGATTGTAGTGTTACTTTTGTTAGGTGCTAAAATATCTTATTTGTTTTGTTTTAGTATAGGACACAAATGAATATTTTAGGTTGTTTTAGATCCCTTAAAGACACATGATAGATATTTTCTAATATTGAAAGATATGGTATTAATTTAAGGTGTTATAGGTTTTTCTTTCTTAGGAGCTTTGGATAGTTTTTGTACCAGCCATACATGATGTGGGTGTATAAACTATATTCCCTAGGCTGATTATATAACTCAGTCCCTAATGCTTGTTTCATTTTTTTAGTTTTGTTGCTAATCTTTTATAATTTCAATTTGATTTTTCATATCCTTGAAAATTTTCAAGCAAGTCCTGAACATTCCTTGTTTTAGTTGCTTTATTTTCTATAACAACGAGCAATTTTGTTTTCAAGCTGGATAAGTTACTGTTCCAGGTTACAAGGAGTGAGTAGGGTTCTGATATTACGGGCAAGTATAGTAGCATTTCTTTTGAGAAAGAAATGTAATTAATTTCAGTCACCAGTGGTGGGTTACAAAAAGGATCTTTAAATAGTGATTAGAGTAGAAAGGTGCATAATACAAGGTGCATAATACAATACCATTTTAATGGGCCCATTTGCTATAACAGCATGCAATTTCATGTTAGGTAAGTTACTATGTTCCAAGTAGTATGAAATGAGTAGGTTTACATTTTGGGAGAAAGTGGTAGGCTTATTTCATCAAATTTAGATAATTTTTTAAATTCAATTAAGGCAAAATATATGCTTTAGTATAAATTTGAGTTTTTTTTTTTTTTTTTAAAATTTTTAAATTAATCCCTATTGTTATTGAAGTTTCAATTTAGTATATTATGTTTTAACATTTTTCGATTCTATCCTTCCTATCAATGATTGTTAAGCTTTCATGACATGATACTTAGTGAATGGGCAAAAAGTTATACGAGTTCGGCTACTTTAGAATTCCTGCTTTAAATATATAACAAGTTGACATAATTTTGAATTAACTTCACTTTGCGGGTCTAATTCCTACTCTAAGTTTCTACCAACTCACTATGTACCATGCATGGGTTTATCATCCGCCAGTTTTAACATTCATTTATGACGAAGTTCTATGAAAAACTGTTGAACGTAAGGGACTAGATTGGAACTTTTTAGACAATGGGGACTAAATTTTAAAATATGCTTAAAACTTTGGGACTGATACAGATATTTAGCTAATTAATTCAATGTCATAAAATTAAATGTACTATGACGGCATATTTTCATTTTATCTGTGTATTTTAACGTTGTGTGTTAGTAAAAATTTGATTGAAAAAATCTATATATTGAACAATAAAATTGAATTTTTTAAAAGATTTGGTACTAAATTGAAAATAAGACCATCATAAGAGTTTTTTTGTTGTTGTTTTTCTTTTATTTTATTCTTTTAGCCTACTTATTTAGCAATCCTAGAAGTGATAGTGTGTCTTTTCCTATTTTTAGATGATGCTTCTGTGGTTTTATTTGCCTATGATTCTTCTTATTTACTCAAGGGAAAACAAGGAGGAGCTGTTGCATCGATTTTTGGGACAATTTGAGTTTAGTCCGATCTACACAACAGACATCTTTTTTTTTCTTTTTTTTTTTCCCTTGAATTCTACTGGTTTACAGGCTGAGATGATGTGGTGCTAGGAATGCTTGAGTACCTATATCATGAGCTGTATTTTTCATCCCAGGCTAATTGACAATGGTTTGCTCCACTGTATGTTGTGTGCTTTCATTTATATTGGAAGTATAGTTCAAGTTACAATGTGCCTGGATTTGAATAGTTTCATATGGTGGTTGATGTTGAACTTAGGAATATAACCATTTGAAACTTTAATTAGTTTCTGATTTTTGATTGTATTCTATTATGATTTTTGAAGTTTTTGTGTTTTACTGGTTTCGATGGATAATATTGATGAGAGGAAACTATTGTAGGTAATGATGCAGGAATGCATGGATGCTGCTGAAGCGCTGCTTTCATAG

mRNA sequence

ATGGATACCCATATTTTCAAAGGCCCCTTCTTCATCGTCTTCTTCATGTCCAGCCCACTACTCGCAGAGGGACGTGCTGTGTTTTTGCCCAATTTTCATTCCATTTTAATTCACCCAACCATTTCCCTCGCACAAAACCCTAGGGCACACCAAGCTGAGGGAATCAACTCTCCGGGTTCTCCAATAATAGCCCTACTACCTTCCAATTTCATCACTCTCTTCGAAATTCAGGTAATGATGCAGGAATGCATGGATGCTGCTGAAGCGCTGCTTTCATAG

Coding sequence (CDS)

ATGGATACCCATATTTTCAAAGGCCCCTTCTTCATCGTCTTCTTCATGTCCAGCCCACTACTCGCAGAGGGACGTGCTGTGTTTTTGCCCAATTTTCATTCCATTTTAATTCACCCAACCATTTCCCTCGCACAAAACCCTAGGGCACACCAAGCTGAGGGAATCAACTCTCCGGGTTCTCCAATAATAGCCCTACTACCTTCCAATTTCATCACTCTCTTCGAAATTCAGGTAATGATGCAGGAATGCATGGATGCTGCTGAAGCGCTGCTTTCATAG

Protein sequence

MDTHIFKGPFFIVFFMSSPLLAEGRAVFLPNFHSILIHPTISLAQNPRAHQAEGINSPGSPIIALLPSNFITLFEIQVMMQECMDAAEALLS

Homology

[Close]

BLAST of Carg05038-RA vs. NCBI nr
Match: KAG7025407.1 (hypothetical protein SDJN02_11902, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MDTHIFKGPFFIVFFMSSPLLAEGRAVFLPNFHSILIHPTISLAQNPRAHQAEGINSPGS 60
          MDTHIFKGPFFIVFFMSSPLLAEGRAVFLPNFHSILIHPTISLAQNPRAHQAEGINSPGS
Sbjct: 1  MDTHIFKGPFFIVFFMSSPLLAEGRAVFLPNFHSILIHPTISLAQNPRAHQAEGINSPGS 60

Query: 61 PIIALLPSNFITLFEIQVMMQECMDAAEALLS 93
          PIIALLPSNFITLFEIQVMMQECMDAAEALLS
Sbjct: 61 PIIALLPSNFITLFEIQVMMQECMDAAEALLS 92

[Close]

BLAST of Carg05038-RA vs. NCBI nr
Match: KGN44606.1 (hypothetical protein Csa_016766 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 57/94 (60.64%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1  MDTHIFKGPFFIVFFMSSPLLAEGRAVFLPNFHSILIHPT--ISLAQNPRAHQAEGINSP 60
          M+THIFKGP       + P    G    L  F S   + T   SLAQNPRAHQAEG NS 
Sbjct: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQF-SFHFNSTNFFSLAQNPRAHQAEGTNSL 60

Query: 61 GSPIIALLPSNFITLFEIQVMMQECMDAAEALLS 93
           SPIIA   SNF TL EIQVMMQECMDAAEALLS
Sbjct: 61 SSPIIAFPASNFFTLLEIQVMMQECMDAAEALLS 93

[Close]

BLAST of Carg05038-RA vs. ExPASy TrEMBL
Match: A0A0A0K9W9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G342000 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.5e-17
Identity = 57/94 (60.64%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1  MDTHIFKGPFFIVFFMSSPLLAEGRAVFLPNFHSILIHPT--ISLAQNPRAHQAEGINSP 60
          M+THIFKGP       + P    G    L  F S   + T   SLAQNPRAHQAEG NS 
Sbjct: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQF-SFHFNSTNFFSLAQNPRAHQAEGTNSL 60

Query: 61 GSPIIALLPSNFITLFEIQVMMQECMDAAEALLS 93
           SPIIA   SNF TL EIQVMMQECMDAAEALLS
Sbjct: 61 SSPIIAFPASNFFTLLEIQVMMQECMDAAEALLS 93

The following BLAST results are available for this feature:

BLAST of Carg05038-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025407.1	1.9e-43	100.00	hypothetical protein SDJN02_11902, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN44606.1	1.1e-16	60.64	hypothetical protein Csa_016766 [Cucumis sativus]	[more]

BLAST of Carg05038-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05038-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9W9	5.5e-17	60.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G342000 PE=4 SV=1	[more]

BLAST of Carg05038-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05038	Carg05038	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05038-RA:1	Carg05038-RA:1	exon
Carg05038-RA:2	Carg05038-RA:2	exon
Carg05038-RA:3	Carg05038-RA:3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05038-RA:cds	Carg05038-RA:cds	CDS
Carg05038-RA:cds	Carg05038-RA:cds_2	CDS
Carg05038-RA:cds	Carg05038-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05038-RA	Carg05038-RA-protein	polypeptide