Carg04999-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04999-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Squamosa promoter-binding-like protein 16
Location	Carg_Chr08: 927995 .. 930717 (+)
Sequence length	1201
RNA-Seq Expression	Carg04999-RA
Synteny	Carg04999-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTTTTCTCTCTTTACTCAACAGATTTTCCCCTTCTCTCCCACCAAAATCCCATGGATTTGGGTCTCTAAACAATACAATTCTCAACACTTCCAAAATACCCATTTCCAACTACATTATCCACTCTTCCCAATTTCTCATTCTAATTTCTTCCTTCTTTTGCTTTCTCTAACTCTTCATCCGCCCAAATCCCAAATCCGATTCCCTTTTGGTTTTTGAACCCGTTTCTCATCCTTCTGTTTCTTCAGTTCTTCCTCTTTCAGCTTCCTCAGGTTGAAGTTGGAGCTTCACTCGTGAGTTTCTTCTAATTTATTGCTGTTTTTTGTTTGTTTTTGTATGAATGCAATTTGTAGGGATTGAAATTAGTTTGTCATGATTTGATGATGCTGCAGAATTGGGTTTCTGTTGGAATTTTCTGTTGTTCTGGATTTTAATCTTGGTGATGATGAGCTACTTTCGTTATACTTTTTACAAAATTTGAGCATAGATCTTAGAGAATTGTGACTGAAGTGGATAGTTCATGTTGATGGGCCATATTCCTCGTCTTTTGCAGCCTAAAATTTGATCTAGTTGAGGAAATTTTGACAGTACTGATTGTATTACTTGTTTGTGTTGTATTTGCTTAAGCTTGAGTTGTATCCTTCCTATTGCTGCTCAATCGTTCATCGTTCATCGTTCATCGTTCATCGTTCATCGTCTGGTTTCTTACTCTTATTGAGGGAAATTTGTATTGGGAATCGGTGTTGTTTAGAGAAAAGGAAAACGTTCAAAAAATTGTAAAGTATAGAAGGAAACTGAGAGTGTGTTGGAGTAGAGGAAGTTGGTTGATGTATTTGAGACTCAGGGGCATTGGTCATATGGGTGAAGGATCAATGGATGACATCGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCGTCGTCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGGTGTGTTGGAATGTTTAGAACATCATATGCTGTAATTTTCTTCATTGATTCAGCCTTCTTATGGTTTTCTTTTCTGATCATTAGAATTCAAGTTATGCAGATGGGGTATACTTTTAGGCTGTTCGTTTTTTTCTGTGTTAGCGGTGGGTTTGGGCTGTTACAAAGGTATCAGAACCAGTCACCGGGCGATGTACCAATGAGGACGTTGGGTCCCCAAGGGGATGGATCGTGAACTCCCACATCGGTTGGAGAGGAGAACGAAGCATTCCTTATAAGGGTGTAGAAACCTTTCCCTAGTAGACGTGTTTTAAAACTGTGAGACTGACGGCAATACGAAATAGGCCAAAGCGGACAACATCTGCTAGCGGTGGGATTGAGCTATTACAAATGGTATCAAAGCTAGACACTGAGGGGTGTGCTAGCGAGGACGTTGGGCTCCCAATGGGGGTAGATTGTGAGATCTCACATTGGTTGGAGAGGGGAACGAAATATTCCTTATGAGTGTGAAAACCTTTTCCTAGTAGACGCGCTTTAAAATCGTGAGGCTGAGGGTGATACGTAACGGGCTAAAGTAGACACTATCTACTAGCGGTGGGCTTGGGTTGTTACAGTGGGTGGGATAAGCTCTCTTCTTTTACTCTATTTCACTACCTCGAGTTTGTGCTTGCATTTGTTTTCTGCTGTAACATGTTCAAGGCGTGCTCGTATCTTTACTCCTCGGACCCCGGACGCGGATGGCGGATTCCCATAATCTATTTGCTTTTTACCAGATAGTTGAATAAGTATTGGAAGCAAAGCTTTGTGGGACTTGCATTTTATATGTTTCTTTTACTTCTTACCTTTGTCTGGTTGGTTCTGTTCTTGGTATTCATTTCAGTTCAATTACACATGTTCTTGTAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTTCGTTATATTAATTTAGGCATTCTCTTCCACGCTTGCATGTTTCGTCATCGAATGACTTGCTTGTACAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTACTGGCAATGATTTGAGCTCATCTTGGATCGGAATGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACATTGCTGACAGAAGAAAAAGTATGTTTCCCGGGCTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTTGTCCATAGCGACGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA

mRNA sequence

TTTGTTTTCTCTCTTTACTCAACAGATTTTCCCCTTCTCTCCCACCAAAATCCCATGGATTTGGGTCTCTAAACAATACAATTCTCAACACTTCCAAAATACCCATTTCCAACTACATTATCCACTCTTCCCAATTTCTCATTCTAATTTCTTCCTTCTTTTGCTTTCTCTAACTCTTCATCCGCCCAAATCCCAAATCCGATTCCCTTTTGGTTTTTGAACCCGTTTCTCATCCTTCTGTTTCTTCAGTTCTTCCTCTTTCAGCTTCCTCAGGTTGAAGTTGGAGCTTCACTCGGGCATTGGTCATATGGGTGAAGGATCAATGGATGACATCGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCGTCGTCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTACTGGCAATGATTTGAGCTCATCTTGGATCGGAATGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACATTGCTGACAGAAGAAAAAGTATGTTTCCCGGGCTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTTGTCCATAGCGACGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA

Coding sequence (CDS)

ATGGGTGAAGGATCAATGGATGACATCGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCGTCGTCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTACTGGCAATGATTTGAGCTCATCTTGGATCGGAATGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACATTGCTGACAGAAGAAAAAGTATGTTTCCCGGGCTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTTGTCCATAGCGACGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA

Protein sequence

MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADRRKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF

Homology

[Close]

BLAST of Carg04999-RA vs. NCBI nr
Match: XP_022959623.1 (squamosa promoter-binding-like protein 16 isoform X2 [Cucurbita moschata] >KAG7025369.1 Squamosa promoter-binding-like protein 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 608.6 bits (1568), Expect = 2.9e-170
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR
Sbjct: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF
Sbjct: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 297

[Close]

BLAST of Carg04999-RA vs. NCBI nr
Match: XP_022959621.1 (squamosa promoter-binding-like protein 16 isoform X1 [Cucurbita moschata] >XP_022959622.1 squamosa promoter-binding-like protein 16 isoform X1 [Cucurbita moschata])

HSP 1 Score: 608.6 bits (1568), Expect = 2.9e-170
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 11  MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 70

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 71  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 130

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR
Sbjct: 131 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 190

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 191 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 250

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF
Sbjct: 251 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 307

[Close]

BLAST of Carg04999-RA vs. NCBI nr
Match: KAG6592958.1 (putative DNA primase large subunit, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 602.4 bits (1552), Expect = 2.1e-168
Identity = 296/297 (99.66%), Postives = 296/297 (99.66%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDDIEGTRVTLIESL SSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 600 MGEGSMDDIEGTRVTLIESL-SSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 659

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 660 RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 719

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR
Sbjct: 720 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 779

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 780 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 839

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF
Sbjct: 840 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 895

[Close]

BLAST of Carg04999-RA vs. NCBI nr
Match: XP_023513759.1 (squamosa promoter-binding-like protein 16 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513760.1 squamosa promoter-binding-like protein 16 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513761.1 squamosa promoter-binding-like protein 16 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584.7 bits (1506), Expect = 4.4e-163
Identity = 285/297 (95.96%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDD+EGTRVTLIES SSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 11  MGEGSMDDMEGTRVTLIES-SSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 70

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 71  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 130

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           TI LNAGRFLYSNQGPRFLPFGNQLLS  NDLSSSW+G IKPEHNDALCSSNSQLD ADR
Sbjct: 131 TIMLNAGRFLYSNQGPRFLPFGNQLLSASNDLSSSWVGTIKPEHNDALCSSNSQLDDADR 190

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKV+GNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 191 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVMGNGCALSLLSTPVEAGEINNLTSMV 250

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHF+H+DGLGFESDLVSPRL SDGSSDANIRCYSMFEDGPDGSSIDLFRF
Sbjct: 251 QSNLIPSSHFIHNDGLGFESDLVSPRLASDGSSDANIRCYSMFEDGPDGSSIDLFRF 306

[Close]

BLAST of Carg04999-RA vs. NCBI nr
Match: XP_023513762.1 (squamosa promoter-binding-like protein 16 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584.7 bits (1506), Expect = 4.4e-163
Identity = 285/297 (95.96%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDD+EGTRVTLIES SSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 1   MGEGSMDDMEGTRVTLIES-SSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           TI LNAGRFLYSNQGPRFLPFGNQLLS  NDLSSSW+G IKPEHNDALCSSNSQLD ADR
Sbjct: 121 TIMLNAGRFLYSNQGPRFLPFGNQLLSASNDLSSSWVGTIKPEHNDALCSSNSQLDDADR 180

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKV+GNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVMGNGCALSLLSTPVEAGEINNLTSMV 240

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHF+H+DGLGFESDLVSPRL SDGSSDANIRCYSMFEDGPDGSSIDLFRF
Sbjct: 241 QSNLIPSSHFIHNDGLGFESDLVSPRLASDGSSDANIRCYSMFEDGPDGSSIDLFRF 296

[Close]

BLAST of Carg04999-RA vs. ExPASy Swiss-Prot
Match: Q6YZE8 (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL16 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-41
Identity = 98/202 (48.51%), Postives = 116/202 (57.43%), Query Frame = 0


Query: 10  EGTRVTLIESLSSSSSRLTKRSR--TPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEF 69
           +G       + +++SS   KR R        Q PSC VDGC  DLSKCRDYHRRHKVCE 
Sbjct: 83  KGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEA 142

Query: 70  HSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAG 129
           HSKTP V + GRE RFCQQCSRFH L EFD+ KRSCRKRLDGHNRRRRKPQP    +N+ 
Sbjct: 143 HSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQPD--PMNSA 202

Query: 130 RFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADRRKSMFPG 189
            +L S QG RF PF            +SW GMIK E +         L I+ R++     
Sbjct: 203 SYLASQQGARFSPFATP------RPEASWTGMIKTEESPYYTHHQIPLGISSRQQHFVGS 262

Query: 190 LSGCDYKEKQPPFLNVGSNNVG 210
            S      ++ PFL  G  + G
Sbjct: 263 TSD---GGRRFPFLQEGEISFG 273

[Close]

BLAST of Carg04999-RA vs. ExPASy Swiss-Prot
Match: Q49I57 (Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.3e-39
Identity = 112/278 (40.29%), Postives = 137/278 (49.28%), Query Frame = 0


Query: 39  QVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDD 98
           Q PSC VDGC +DL KCRDYHRRHKVCE HSKTP V + GRE RFCQQCSRFH L EFD 
Sbjct: 101 QCPSCAVDGCRADLGKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDA 160

Query: 99  RKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSW-I 158
            KRSCRKRLDGHNRRRRKPQP T+   +  F+ S QG RF PF +        L +SW  
Sbjct: 161 DKRSCRKRLDGHNRRRRKPQPDTMA--SASFIASQQGTRFSPFAHP------RLEASWPP 220

Query: 159 GMIKPE-------HNDALCSSNSQLDIADRRKSMFPGLSGCD----YKEKQPPFLNVG-- 218
           G++K E       H   L SS+S       R+  F  L         + ++ PFL  G  
Sbjct: 221 GVMKTEESPYHITHQIPLGSSSSS------RQQHFVALGAATPAYAKEGRRFPFLQEGEI 280

Query: 219 ----------------------------SNNVG--------NVQKVVGNGCALSLLSTPV 267
                                       S+  G         + +V+ + CALSLLS P 
Sbjct: 281 SFATGVVLEPPAAAPACQPLLRTGAPSESSGAGGSKMFSDQGLARVLDSDCALSLLSAPA 340

[Close]

BLAST of Carg04999-RA vs. ExPASy Swiss-Prot
Match: Q49I55 (Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.3e-39
Identity = 112/278 (40.29%), Postives = 137/278 (49.28%), Query Frame = 0


Query: 39  QVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDD 98
           Q PSC VDGC +DL KCRDYHRRHKVCE HSKTP V + GRE RFCQQCSRFH L EFD 
Sbjct: 100 QCPSCAVDGCRADLGKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDA 159

Query: 99  RKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSW-I 158
            KRSCRKRLDGHNRRRRKPQP T+   +  F+ S QG RF PF +        L +SW  
Sbjct: 160 DKRSCRKRLDGHNRRRRKPQPDTMA--SASFIASQQGTRFSPFAHP------RLEASWPP 219

Query: 159 GMIKPE-------HNDALCSSNSQLDIADRRKSMFPGLSGCD----YKEKQPPFLNVG-- 218
           G++K E       H   L SS+S       R+  F  L         + ++ PFL  G  
Sbjct: 220 GVMKTEESPYHITHQIPLGSSSSS------RQQHFVALGAATPAYAKEGRRFPFLQEGEI 279

Query: 219 ----------------------------SNNVG--------NVQKVVGNGCALSLLSTPV 267
                                       S+  G         + +V+ + CALSLLS P 
Sbjct: 280 SFATGVVLEPPAAAPACQPLLRTGAPSESSGAGGSKMFSDQGLARVLDSDCALSLLSAPA 339

[Close]

BLAST of Carg04999-RA vs. ExPASy Swiss-Prot
Match: Q0J0K1 (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL18 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.9e-38
Identity = 84/151 (55.63%), Postives = 96/151 (63.58%), Query Frame = 0


Query: 37  GPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEF 96
           G Q PSC VDGC +DLSK RDYHRRHKVCE HSKTP V + GRE RFCQQCSRFH L EF
Sbjct: 109 GGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEF 168

Query: 97  DDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSW 156
           D+ KRSCRKRLDGHNRRRRKPQ    ++++G F+ S QG RF  F      T      SW
Sbjct: 169 DEAKRSCRKRLDGHNRRRRKPQ--ADSMSSGSFMTSQQGTRFASF------TPPRPEPSW 228

Query: 157 IGMIKPEHNDALCSSNSQLDIADRRKSMFPG 188
            G+IK E        +    +   R+  F G
Sbjct: 229 PGIIKSEETPYYSHHHHPHPVMTSRQPHFVG 251

[Close]

BLAST of Carg04999-RA vs. ExPASy Swiss-Prot
Match: B9DI20 (Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana OX=3702 GN=SPL13A PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-37
Identity = 102/226 (45.13%), Postives = 131/226 (57.96%), Query Frame = 0


Query: 18  ESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTIC 77
           E   SSSS+ T+ +    N  Q+P C+VDGC SD S CR+YH+RHKVC+ HSKTP VTI 
Sbjct: 78  EGSRSSSSKRTRGNGVGTN--QMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTIN 137

Query: 78  GREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPR 137
           G +QRFCQQCSRFH+L EFD+ KRSCRKRLDGHNRRRRKPQP  I   A  F    QG +
Sbjct: 138 GHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPA-NFFTGFQGSK 197

Query: 138 FLPF--GNQLLSTGNDLSSSW----IGMIKPEHNDALCSSNSQLDIADRRKS--MFPGLS 197
            L F  G+ +  T + L+ SW    + +    +  +   S S +  +   K+  MFP  S
Sbjct: 198 LLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFPISS 257

Query: 198 GCDYKE---KQPPFL--NVGSNNVGNVQKVVG----NGCALSLLST 227
             +      KQ PFL     S      +++      + CALSLLS+
Sbjct: 258 SPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCALSLLSS 300

[Close]

BLAST of Carg04999-RA vs. ExPASy TrEMBL
Match: A0A6J1H521 (squamosa promoter-binding-like protein 16 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460645 PE=4 SV=1)

HSP 1 Score: 608.6 bits (1568), Expect = 1.4e-170
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 11  MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 70

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 71  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 130

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR
Sbjct: 131 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 190

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 191 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 250

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF
Sbjct: 251 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 307

[Close]

BLAST of Carg04999-RA vs. ExPASy TrEMBL
Match: A0A6J1H6H4 (squamosa promoter-binding-like protein 16 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460645 PE=4 SV=1)

HSP 1 Score: 608.6 bits (1568), Expect = 1.4e-170
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR
Sbjct: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF
Sbjct: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 297

[Close]

BLAST of Carg04999-RA vs. ExPASy TrEMBL
Match: A0A6J1KPU5 (squamosa promoter-binding-like protein 16 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497618 PE=4 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 6.9e-162
Identity = 285/297 (95.96%), Postives = 289/297 (97.31%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDD EGTRVTLIESL SSS RLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 1   MGEGSMDDNEGTRVTLIESL-SSSLRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           T+TLNAGRFLYSNQGPRFLPFGNQLLS  NDLSSSWIG IKPEHNDALCSSNSQLD+ADR
Sbjct: 121 TMTLNAGRFLYSNQGPRFLPFGNQLLSACNDLSSSWIGTIKPEHNDALCSSNSQLDVADR 180

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGS+NVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 181 RKSMFPGLSGCDYKEKQPPFLNVGSSNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHF H+DGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLF F
Sbjct: 241 QSNLIPSSHFSHTDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFWF 296

[Close]

BLAST of Carg04999-RA vs. ExPASy TrEMBL
Match: A0A6J1KTZ2 (squamosa promoter-binding-like protein 16 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497618 PE=4 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 6.9e-162
Identity = 285/297 (95.96%), Postives = 289/297 (97.31%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           MGEGSMDD EGTRVTLIESL SSS RLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR
Sbjct: 11  MGEGSMDDNEGTRVTLIESL-SSSLRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 70

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 71  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 130

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           T+TLNAGRFLYSNQGPRFLPFGNQLLS  NDLSSSWIG IKPEHNDALCSSNSQLD+ADR
Sbjct: 131 TMTLNAGRFLYSNQGPRFLPFGNQLLSACNDLSSSWIGTIKPEHNDALCSSNSQLDVADR 190

Query: 181 RKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 240
           RKSMFPGLSGCDYKEKQPPFLNVGS+NVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV
Sbjct: 191 RKSMFPGLSGCDYKEKQPPFLNVGSSNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMV 250

Query: 241 QSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 298
           QSNLIPSSHF H+DGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLF F
Sbjct: 251 QSNLIPSSHFSHTDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFWF 306

[Close]

BLAST of Carg04999-RA vs. ExPASy TrEMBL
Match: A0A0A0KAG4 (SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G094760 PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 2.0e-129
Identity = 242/322 (75.16%), Postives = 259/322 (80.43%), Query Frame = 0


Query: 1   MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHR 60
           M E SMDD++GTRV LIE   SSSSRL KRSR P +G QVPSCMVDGCSSDLSKCRDYHR
Sbjct: 11  MDERSMDDMKGTRVALIE---SSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHR 70

Query: 61  RHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 120
           RHKVCE HSKTPKVTICG+EQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA
Sbjct: 71  RHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPA 130

Query: 121 TITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADR 180
           T+TLNAGRFLY NQGPRFLPFGNQLL+  +D+SSSWIGMIKPE+N  LC  NSQ D  DR
Sbjct: 131 TMTLNAGRFLYGNQGPRFLPFGNQLLTASSDVSSSWIGMIKPENNVPLCGGNSQFDFTDR 190

Query: 181 RKSMFPGLSGCDYKEKQ-----------------PPFLNVGSNNVGNVQKVVGNG----- 240
           RKSM PG    DYKEKQ                  PFLNVGS+N GNVQKV+GNG     
Sbjct: 191 RKSMLPGSLSSDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFF 250

Query: 241 ---CALSLLSTPVEAGEINNLTSMVQSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDA 298
              CALSLLSTPVE GEI NL+SM QSNLIP +HF+HSDGLG E D +S  LVSDGSSDA
Sbjct: 251 DSDCALSLLSTPVEPGEI-NLSSMSQSNLIPPAHFIHSDGLGLEGDPISSGLVSDGSSDA 310

[Close]

BLAST of Carg04999-RA vs. TAIR 10
Match: AT5G50570.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-38
Identity = 102/226 (45.13%), Postives = 131/226 (57.96%), Query Frame = 0


Query: 18  ESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTIC 77
           E   SSSS+ T+ +    N  Q+P C+VDGC SD S CR+YH+RHKVC+ HSKTP VTI 
Sbjct: 78  EGSRSSSSKRTRGNGVGTN--QMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTIN 137

Query: 78  GREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPR 137
           G +QRFCQQCSRFH+L EFD+ KRSCRKRLDGHNRRRRKPQP  I   A  F    QG +
Sbjct: 138 GHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPA-NFFTGFQGSK 197

Query: 138 FLPF--GNQLLSTGNDLSSSW----IGMIKPEHNDALCSSNSQLDIADRRKS--MFPGLS 197
            L F  G+ +  T + L+ SW    + +    +  +   S S +  +   K+  MFP  S
Sbjct: 198 LLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFPISS 257

Query: 198 GCDYKE---KQPPFL--NVGSNNVGNVQKVVG----NGCALSLLST 227
             +      KQ PFL     S      +++      + CALSLLS+
Sbjct: 258 SPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCALSLLSS 300

[Close]

BLAST of Carg04999-RA vs. TAIR 10
Match: AT5G50670.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-38
Identity = 102/226 (45.13%), Postives = 131/226 (57.96%), Query Frame = 0


Query: 18  ESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTIC 77
           E   SSSS+ T+ +    N  Q+P C+VDGC SD S CR+YH+RHKVC+ HSKTP VTI 
Sbjct: 78  EGSRSSSSKRTRGNGVGTN--QMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTIN 137

Query: 78  GREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPR 137
           G +QRFCQQCSRFH+L EFD+ KRSCRKRLDGHNRRRRKPQP  I   A  F    QG +
Sbjct: 138 GHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPA-NFFTGFQGSK 197

Query: 138 FLPF--GNQLLSTGNDLSSSW----IGMIKPEHNDALCSSNSQLDIADRRKS--MFPGLS 197
            L F  G+ +  T + L+ SW    + +    +  +   S S +  +   K+  MFP  S
Sbjct: 198 LLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFPISS 257

Query: 198 GCDYKE---KQPPFL--NVGSNNVGNVQKVVG----NGCALSLLST 227
             +      KQ PFL     S      +++      + CALSLLS+
Sbjct: 258 SPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCALSLLSS 300

[Close]

BLAST of Carg04999-RA vs. TAIR 10
Match: AT5G50570.2 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-38
Identity = 102/226 (45.13%), Postives = 131/226 (57.96%), Query Frame = 0


Query: 18  ESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTIC 77
           E   SSSS+ T+ +    N  Q+P C+VDGC SD S CR+YH+RHKVC+ HSKTP VTI 
Sbjct: 78  EGSRSSSSKRTRGNGVGTN--QMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTIN 137

Query: 78  GREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPR 137
           G +QRFCQQCSRFH+L EFD+ KRSCRKRLDGHNRRRRKPQP  I   A  F    QG +
Sbjct: 138 GHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPA-NFFTGFQGSK 197

Query: 138 FLPF--GNQLLSTGNDLSSSW----IGMIKPEHNDALCSSNSQLDIADRRKS--MFPGLS 197
            L F  G+ +  T + L+ SW    + +    +  +   S S +  +   K+  MFP  S
Sbjct: 198 LLEFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFPISS 257

Query: 198 GCDYKE---KQPPFL--NVGSNNVGNVQKVVG----NGCALSLLST 227
             +      KQ PFL     S      +++      + CALSLLS+
Sbjct: 258 SPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCALSLLSS 300

[Close]

BLAST of Carg04999-RA vs. TAIR 10
Match: AT2G42200.1 (squamosa promoter binding protein-like 9 )

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-33
Identity = 88/225 (39.11%), Postives = 122/225 (54.22%), Query Frame = 0


Query: 21  SSSSSRLTKRSRTPYNGP--QVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICG 80
           SSS  R  +R R   +G   Q+P C V+GC  DL+  + Y+ RH+VC  HSKTPKVT+ G
Sbjct: 50  SSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAG 109

Query: 81  REQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRF------LYS 140
            EQRFCQQCSRFH L EFD  KRSCR+RL GHN RRRKPQPA++++ A R+      LY 
Sbjct: 110 IEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQPASLSVLASRYGRIAPSLYE 169

Query: 141 N--QGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADRRKSMFPGLSG 200
           N   G      GNQ +   +  +     M +P     + S + Q++  +       G  G
Sbjct: 170 NGDAGMNGSFLGNQEIGWPSSRTLDTRVMRRP-----VSSPSWQINPMNVFSQGSVGGGG 229

Query: 201 CDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINN 236
             +   +     +    + + + +  + CALSLLS P +  + NN
Sbjct: 230 TSFSSPE-----IMDTKLESYKGIGDSNCALSLLSNPHQPHDNNN 264

[Close]

BLAST of Carg04999-RA vs. TAIR 10
Match: AT1G27370.1 (squamosa promoter binding protein-like 10 )

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-30
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 29  KRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCS 88
           K++++     QVP C +DGC  DLS  +DYHR+H+VCE HSK PKV + G E+RFCQQCS
Sbjct: 162 KKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCS 221

Query: 89  RFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLST 148
           RFH++ EFD++KRSCRKRL  HN RRRKPQ     LN+ R     Q    L +    L+T
Sbjct: 222 RFHAVSEFDEKKRSCRKRLSHHNARRRKPQ-GVFPLNSERVFDRRQHTSML-WNGLSLNT 281

Query: 149 GNDLSSSW 157
            ++   +W
Sbjct: 282 RSEEKYTW 287

The following BLAST results are available for this feature:

BLAST of Carg04999-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959623.1	2.9e-170	100.00	squamosa promoter-binding-like protein 16 isoform X2 [Cucurbita moschata] >KAG70...	[more]
XP_022959621.1	2.9e-170	100.00	squamosa promoter-binding-like protein 16 isoform X1 [Cucurbita moschata] >XP_02...	[more]
KAG6592958.1	2.1e-168	99.66	putative DNA primase large subunit, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023513759.1	4.4e-163	95.96	squamosa promoter-binding-like protein 16 isoform X1 [Cucurbita pepo subsp. pepo...	[more]
XP_023513762.1	4.4e-163	95.96	squamosa promoter-binding-like protein 16 isoform X2 [Cucurbita pepo subsp. pepo...	[more]

BLAST of Carg04999-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6YZE8	1.2e-41	48.51	Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q49I57	9.3e-39	40.29	Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=3 SV=1	[more]
Q49I55	9.3e-39	40.29	Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=1 SV=1	[more]
Q0J0K1	7.9e-38	55.63	Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica OX=399...	[more]
B9DI20	1.8e-37	45.13	Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana OX=3702 GN=SP...	[more]

BLAST of Carg04999-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H521	1.4e-170	100.00	squamosa promoter-binding-like protein 16 isoform X1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1H6H4	1.4e-170	100.00	squamosa promoter-binding-like protein 16 isoform X2 OS=Cucurbita moschata OX=36...	[more]
A0A6J1KPU5	6.9e-162	95.96	squamosa promoter-binding-like protein 16 isoform X2 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1KTZ2	6.9e-162	95.96	squamosa promoter-binding-like protein 16 isoform X1 OS=Cucurbita maxima OX=3661...	[more]
A0A0A0KAG4	2.0e-129	75.16	SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G094760 PE...	[more]

BLAST of Carg04999-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50570.1	1.2e-38	45.13	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT5G50670.1	1.2e-38	45.13	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT5G50570.2	1.2e-38	45.13	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT2G42200.1	2.7e-33	39.11	squamosa promoter binding protein-like 9	[more]
AT1G27370.1	1.6e-30	50.00	squamosa promoter binding protein-like 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 43..116 e-value: 1.3E-28 score: 99.1
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 40..117 score: 31.743927
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 35..104 e-value: 1.0E-31 score: 110.9
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 41..122
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 22..243
None	No IPR available	PANTHER	PTHR31251:SF126	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED	coord: 22..243

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04999	Carg04999	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04999-RA:1	Carg04999-RA:1	exon
Carg04999-RA:2	Carg04999-RA:2	exon
Carg04999-RA:3	Carg04999-RA:3	exon
Carg04999-RA:4	Carg04999-RA:4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04999-RA:five_prime_utr	Carg04999-RA:five_prime_utr	five_prime_UTR
Carg04999-RA:five_prime_utr	Carg04999-RA:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04999-RA:cds	Carg04999-RA:cds	CDS
Carg04999-RA:cds	Carg04999-RA:cds_2	CDS
Carg04999-RA:cds	Carg04999-RA:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04999-RA	Carg04999-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding