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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTTATGGTCAATGTCTGTCACAGATACATGTACGAGGAGTTCACATCAAGGTCATGTGTTAAATCCAACGGTGTTGATGTGCAGAATTCATAGAAATAGGGTTTTGTGAGACAACATTTCTGGAAGTGAAAAACCAGGTGGGTTTTCTCTAAATCTACCCCTAAATTTTTGTCTTATTACACTATTTACCCTTGCAATTTAGTCCCTCATTTCTCTCTTCTTTTTATATCCCCCACCCTCTCTATCCCCATTCCATCCTCTTCTTCCTCCTCGGTTCTCTCTCGGGTCTTAGGGTTTCGTCGATTTCTTTTTGAGGGGAATGTTGTCTGGCTCGAGGACGCTTTTCTTAACGCTCTTAGTTTCAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTAATTCCACCGCCCCTCAACGACAGTAACGACGACGACGACAACGACGAGGTTCGGGTCTTCTTTTAAAAATTTCCATTTTTGGGTATGGATTTTTATGAGACTATAATGTTTGGAAGTGAATTAATTAAGATGGGTTGGTGCAGATTGGTGTGATGATGAAGCTCCTTTTTGACTTTCAGTTGGGAGTCTGCCCAAAATCCCCTCTTTCTTCATCATTATTGGCTCTTTTTTTGCCCTCTTAGATCTTGTAATCATGCCTTTCTTTCCCTTTTTT mRNA sequence ATGGTTATGGTCAATGTCTGTCACAGATACATGTACGAGGAGTTCACATCAAGGCTTCATTCCCCCCAATTAATTCCACCGCCCCTCAACGACAGTAACGACGACGACGACAACGACGAGATTGGTGTGATGATGAAGCTCCTTTTTGACTTTCAGTTGGGAGTCTGCCCAAAATCCCCTCTTTCTTCATCATTATTGGCTCTTTTTTTGCCCTCTTAGATCTTGTAATCATGCCTTTCTTTCCCTTTTTT Coding sequence (CDS) ATGGTTATGGTCAATGTCTGTCACAGATACATGTACGAGGAGTTCACATCAAGGCTTCATTCCCCCCAATTAATTCCACCGCCCCTCAACGACAGTAACGACGACGACGACAACGACGAGATTGGTGTGATGATGAAGCTCCTTTTTGACTTTCAGTTGGGAGTCTGCCCAAAATCCCCTCTTTCTTCATCATTATTGGCTCTTTTTTTGCCCTCTTAG Protein sequence MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSPLSSSLLALFLPS
Homology
BLAST of Carg04962-RA vs. NCBI nr
Match: KAG7025333.1 (hypothetical protein SDJN02_11828, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 150.2 bits (378), Expect = 6.8e-33 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 1 MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSP 60
MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSP
Sbjct: 1 MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSP 60
Query: 61 LSSSLLALFLPS 73
LSSSLLALFLPS
Sbjct: 61 LSSSLLALFLPS 72
BLAST of Carg04962-RA vs. NCBI nr
Match: KAG6592926.1 (hypothetical protein SDJN03_12402, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 146.4 bits (368), Expect = 9.8e-32 Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 1 MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSP 60
MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDD++EIGVMMKLLFDFQLGVCPKSP
Sbjct: 1 MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDDNEIGVMMKLLFDFQLGVCPKSP 60
Query: 61 LSSSLLALFLPS 73
LSSSLLALFLPS
Sbjct: 61 LSSSLLALFLPS 72
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7025333.1 | 6.8e-33 | 100.00 | hypothetical protein SDJN02_11828, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6592926.1 | 9.8e-32 | 97.22 | hypothetical protein SDJN03_12402, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg04962 | Carg04962 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg04962-RA:3 | Carg04962-RA:3 | exon |
| Carg04962-RA:2 | Carg04962-RA:2 | exon |
| Carg04962-RA:1 | Carg04962-RA:1 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg04962-RA:three_prime_utr | Carg04962-RA:three_prime_utr | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg04962-RA:cds | Carg04962-RA:cds_3 | CDS |
| Carg04962-RA:cds | Carg04962-RA:cds_2 | CDS |
| Carg04962-RA:cds | Carg04962-RA:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg04962-RA | Carg04962-RA-protein | polypeptide |
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