Carg04962 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04962
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 710963 .. 711637 (-)
RNA-Seq ExpressionCarg04962
SyntenyCarg04962
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGGTCAATGTCTGTCACAGATACATGTACGAGGAGTTCACATCAAGGTCATGTGTTAAATCCAACGGTGTTGATGTGCAGAATTCATAGAAATAGGGTTTTGTGAGACAACATTTCTGGAAGTGAAAAACCAGGTGGGTTTTCTCTAAATCTACCCCTAAATTTTTGTCTTATTACACTATTTACCCTTGCAATTTAGTCCCTCATTTCTCTCTTCTTTTTATATCCCCCACCCTCTCTATCCCCATTCCATCCTCTTCTTCCTCCTCGGTTCTCTCTCGGGTCTTAGGGTTTCGTCGATTTCTTTTTGAGGGGAATGTTGTCTGGCTCGAGGACGCTTTTCTTAACGCTCTTAGTTTCAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTAATTCCACCGCCCCTCAACGACAGTAACGACGACGACGACAACGACGAGGTTCGGGTCTTCTTTTAAAAATTTCCATTTTTGGGTATGGATTTTTATGAGACTATAATGTTTGGAAGTGAATTAATTAAGATGGGTTGGTGCAGATTGGTGTGATGATGAAGCTCCTTTTTGACTTTCAGTTGGGAGTCTGCCCAAAATCCCCTCTTTCTTCATCATTATTGGCTCTTTTTTTGCCCTCTTAGATCTTGTAATCATGCCTTTCTTTCCCTTTTTT

mRNA sequence

ATGGTTATGGTCAATGTCTGTCACAGATACATGTACGAGGAGTTCACATCAAGGCTTCATTCCCCCCAATTAATTCCACCGCCCCTCAACGACAGTAACGACGACGACGACAACGACGAGATTGGTGTGATGATGAAGCTCCTTTTTGACTTTCAGTTGGGAGTCTGCCCAAAATCCCCTCTTTCTTCATCATTATTGGCTCTTTTTTTGCCCTCTTAGATCTTGTAATCATGCCTTTCTTTCCCTTTTTT

Coding sequence (CDS)

ATGGTTATGGTCAATGTCTGTCACAGATACATGTACGAGGAGTTCACATCAAGGCTTCATTCCCCCCAATTAATTCCACCGCCCCTCAACGACAGTAACGACGACGACGACAACGACGAGATTGGTGTGATGATGAAGCTCCTTTTTGACTTTCAGTTGGGAGTCTGCCCAAAATCCCCTCTTTCTTCATCATTATTGGCTCTTTTTTTGCCCTCTTAG

Protein sequence

MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSPLSSSLLALFLPS
Homology
[Close]
BLAST of Carg04962 vs. NCBI nr
Match: KAG7025333.1 (hypothetical protein SDJN02_11828, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.2 bits (378), Expect = 6.8e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSP 60
          MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSP
Sbjct: 1  MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSP 60

Query: 61 LSSSLLALFLPS 73
          LSSSLLALFLPS
Sbjct: 61 LSSSLLALFLPS 72

[Close]
BLAST of Carg04962 vs. NCBI nr
Match: KAG6592926.1 (hypothetical protein SDJN03_12402, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 9.8e-32
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDNDEIGVMMKLLFDFQLGVCPKSP 60
          MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDD++EIGVMMKLLFDFQLGVCPKSP
Sbjct: 1  MVMVNVCHRYMYEEFTSRLHSPQLIPPPLNDSNDDDDDNEIGVMMKLLFDFQLGVCPKSP 60

Query: 61 LSSSLLALFLPS 73
          LSSSLLALFLPS
Sbjct: 61 LSSSLLALFLPS 72

The following BLAST results are available for this feature:
BLAST of Carg04962 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025333.16.8e-33100.00hypothetical protein SDJN02_11828, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6592926.19.8e-3297.22hypothetical protein SDJN03_12402, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg04962 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04962 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04962 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04962-RACarg04962-RAmRNA