Carg01446-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01446-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 3940716 .. 3942771 (+)
Sequence length282
RNA-Seq ExpressionCarg01446-RA
SyntenyCarg01446-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGAATAAAGCCCAAAAGTTCGAATATTCGGAAACCGAAACCCAATAATCTTGACTGGCCGTCACCGGTTGGGACCGGCACTATAAAAGCCCTAACTTGCGCGTTGGCAGGATCCCTTCCCTCGAACTGCGAGATTTCCTCTCTCTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTAACTTCGGGTTAGGGCTTCTTTCTTCCCGCCCTCCACAGTTTCCGCTACTTAATTTGATTCCCACCGGTATGTGTGTGTTGCGATTGTTTTTGCATCTTTTGGGTTTATAGTTTTTGAGATTCTTTCTTCCTGCACTCTACAGCTTCCGCTACTTAATTTGATTTCAACCGGTATGTGTTTGTTGCGATTGTTTTTGCATCTTTGGGGTTTATAGTTTTTGAGACGGTCAATTAAAATTTTGAATCCGGCTACTTCAAATAATGTTTATATGTGGGGTAAAGTAGCTTGGGTTGATGGGATTGAAGGAACTTCAGCAATTGACTTCTATTAGTTCGGTTTGTGGATGATGAATTTTCCAATACTGTAAAATGTGCAGATGGTGGTTGTGGGGATTGTTTTTTTTCTCAAGCTTTCGCCTCTTCCTACCTTTTTATTCCCAAGATGAACATAAATTATGAACTCTGACGATGCATTCTATTCATACTCGTGTTAAAACCTGCAGTTATTATCTTAGATGAGCTTTTAGCCTTGTACGTGCTTTGACGTCATTGTTTACTTCTTATTTAGTGGTTTAAGGATACTTTTGTTTTTACTTTACTAAGTCCTCTTGTTACTGGGTTTGGTTGGGTTTATCTGTTCTTTAAATATGGTTTGTGAATTTTTTTCATCCATTTATTCTGTTCCGTTTTGGGTGTAATGCCAAGGTTACTGCATTTATACAATCCATCATCATTTTTATTTTTTTTTGGATTCAACTATAATGTACTAAATAATTTGTTTCCTGCTTAAAGGTTTGGAGAAGGCGTAGAACCATTTGGGTTCTTAGATATAATACTATTTATGATAAGTTTTGGTATGAAATTAGAAAACCCAGATCTCTATTGCTGCCTTCATCTAATAAATGAACACAAGCTTACAATTCTGAAGTAAGACACTGACCTTGTGCTAAAATTTTCTTTTTATTGATGAGAAGCCGTGCTTTCATCTAGAGAAAATGAAAGAACAAAAAGGATATACAAAAAGACAGCCCAACTAGAGAAGTTAGATCTGACTATACAAAACTGGCTTCCAGTTAATTGAGATAAAAATTTAATAGGAAAAGTCTTGAAATAGTCAAGATGTAATAATTTATCCAACTCTTCCAGTCTTTTATCTATCTGATCCTCTATACATATTTTCTTAGCATTTTTTTTTTAATTGGATGAGTTGTGAAAATTTGATCTAAAATTTGTCTCCTCTTCTTCAACTCACAGGTTACCCCAATTTAGATTACTTTCTTCTGTTTTATGATTCATTCATCCTTCCCACTTGAATCTCTCTTGTGAAAAAACAATTAAAGCCTAGACTTCCATCATGCATCCTATATCCAAGGGACTTTTTGAATTTGGCCAATAGTGGGCTAAGAGGTGGTTTGTGGTTGAAAGATTTGATGGCATAGGTATACGAGTTGGGAGTGAGTCACCTGTGGAGGCAAATTCTTAACGACTTAGGTTGATGAAATTGGACATGGGAATATTGTAGAGGAGTAGAAGGCTTTTTCTGCTTTAAAATTTTCTTTGCTACTCGTAGTATGGGGAACCTAATAATTTAAACAAGAAAGTGAATGAAGGAAGGCTTTGTTGGCTGCTGACTTTGGAAGGATGTCTAGCCCTTTTTTCCAGCTGCACCACTTGGAAGTATTTTCATATCAGTTGAATGTCACTTGTGAAAATGAGCAAATGCTCTTTTCTAGGTGTCTTTTTTTGTTGGGTCCTTCTTTTGATTCTTTTTGTAAGCATAGATCATGTATAGTTCTCATATGCTATCGATGAGGGTGACTGTATTCTTTTTGTCGCTGTAGGTAGATGTCTAGTTATTGACCCATAA

mRNA sequence

ATGAACGGAATAAAGCCCAAAAGTTCGAATATTCGGAAACCGAAACCCAATAATCTTGACTGGCCGTCACCGGTTGGGACCGGCACTATAAAAGCCCTAACTTGCGCGTTGGCAGGATCCCTTCCCTCGAACTGCGAGATTTCCTCTCTCTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTAACTTCGGGTTAGGGCTTCTTTCTTCCCGCCCTCCACAGTTTCCGCTACTTAATTTGATTCCCACCGGTAGATGTCTAGTTATTGACCCATAA

Coding sequence (CDS)

ATGAACGGAATAAAGCCCAAAAGTTCGAATATTCGGAAACCGAAACCCAATAATCTTGACTGGCCGTCACCGGTTGGGACCGGCACTATAAAAGCCCTAACTTGCGCGTTGGCAGGATCCCTTCCCTCGAACTGCGAGATTTCCTCTCTCTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTAACTTCGGGTTAGGGCTTCTTTCTTCCCGCCCTCCACAGTTTCCGCTACTTAATTTGATTCCCACCGGTAGATGTCTAGTTATTGACCCATAA

Protein sequence

MNGIKPKSSNIRKPKPNNLDWPSPVGTGTIKALTCALAGSLPSNCEISSLCCLSLFRSTSDNFNFGLGLLSSRPPQFPLLNLIPTGRCLVIDP
Homology
[Close]
BLAST of Carg01446-RA vs. NCBI nr
Match: KAG6579048.1 (hypothetical protein SDJN03_23496, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016572.1 hypothetical protein SDJN02_21682, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 9.0e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MNGIKPKSSNIRKPKPNNLDWPSPVGTGTIKALTCALAGSLPSNCEISSLCCLSLFRSTS 60
          MNGIKPKSSNIRKPKPNNLDWPSPVGTGTIKALTCALAGSLPSNCEISSLCCLSLFRSTS
Sbjct: 1  MNGIKPKSSNIRKPKPNNLDWPSPVGTGTIKALTCALAGSLPSNCEISSLCCLSLFRSTS 60

Query: 61 DNFNFGLGLLSSRPPQFPLLNLIPTGRCLVIDP 94
          DNFNFGLGLLSSRPPQFPLLNLIPTGRCLVIDP
Sbjct: 61 DNFNFGLGLLSSRPPQFPLLNLIPTGRCLVIDP 93

The following BLAST results are available for this feature:
BLAST of Carg01446-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579048.19.0e-46100.00hypothetical protein SDJN03_23496, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg01446-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01446-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01446-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg01446Carg01446gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg01446-RA:1Carg01446-RA:1exon
Carg01446-RA:2Carg01446-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg01446-RA:cdsCarg01446-RA:cdsCDS
Carg01446-RA:cdsCarg01446-RA:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg01446-RACarg01446-RA-proteinpolypeptide