Carg01446 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01446
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 3940716 .. 3942771 (+)
RNA-Seq ExpressionCarg01446
SyntenyCarg01446
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGAATAAAGCCCAAAAGTTCGAATATTCGGAAACCGAAACCCAATAATCTTGACTGGCCGTCACCGGTTGGGACCGGCACTATAAAAGCCCTAACTTGCGCGTTGGCAGGATCCCTTCCCTCGAACTGCGAGATTTCCTCTCTCTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTAACTTCGGGTTAGGGCTTCTTTCTTCCCGCCCTCCACAGTTTCCGCTACTTAATTTGATTCCCACCGGTATGTGTGTGTTGCGATTGTTTTTGCATCTTTTGGGTTTATAGTTTTTGAGATTCTTTCTTCCTGCACTCTACAGCTTCCGCTACTTAATTTGATTTCAACCGGTATGTGTTTGTTGCGATTGTTTTTGCATCTTTGGGGTTTATAGTTTTTGAGACGGTCAATTAAAATTTTGAATCCGGCTACTTCAAATAATGTTTATATGTGGGGTAAAGTAGCTTGGGTTGATGGGATTGAAGGAACTTCAGCAATTGACTTCTATTAGTTCGGTTTGTGGATGATGAATTTTCCAATACTGTAAAATGTGCAGATGGTGGTTGTGGGGATTGTTTTTTTTCTCAAGCTTTCGCCTCTTCCTACCTTTTTATTCCCAAGATGAACATAAATTATGAACTCTGACGATGCATTCTATTCATACTCGTGTTAAAACCTGCAGTTATTATCTTAGATGAGCTTTTAGCCTTGTACGTGCTTTGACGTCATTGTTTACTTCTTATTTAGTGGTTTAAGGATACTTTTGTTTTTACTTTACTAAGTCCTCTTGTTACTGGGTTTGGTTGGGTTTATCTGTTCTTTAAATATGGTTTGTGAATTTTTTTCATCCATTTATTCTGTTCCGTTTTGGGTGTAATGCCAAGGTTACTGCATTTATACAATCCATCATCATTTTTATTTTTTTTTGGATTCAACTATAATGTACTAAATAATTTGTTTCCTGCTTAAAGGTTTGGAGAAGGCGTAGAACCATTTGGGTTCTTAGATATAATACTATTTATGATAAGTTTTGGTATGAAATTAGAAAACCCAGATCTCTATTGCTGCCTTCATCTAATAAATGAACACAAGCTTACAATTCTGAAGTAAGACACTGACCTTGTGCTAAAATTTTCTTTTTATTGATGAGAAGCCGTGCTTTCATCTAGAGAAAATGAAAGAACAAAAAGGATATACAAAAAGACAGCCCAACTAGAGAAGTTAGATCTGACTATACAAAACTGGCTTCCAGTTAATTGAGATAAAAATTTAATAGGAAAAGTCTTGAAATAGTCAAGATGTAATAATTTATCCAACTCTTCCAGTCTTTTATCTATCTGATCCTCTATACATATTTTCTTAGCATTTTTTTTTTAATTGGATGAGTTGTGAAAATTTGATCTAAAATTTGTCTCCTCTTCTTCAACTCACAGGTTACCCCAATTTAGATTACTTTCTTCTGTTTTATGATTCATTCATCCTTCCCACTTGAATCTCTCTTGTGAAAAAACAATTAAAGCCTAGACTTCCATCATGCATCCTATATCCAAGGGACTTTTTGAATTTGGCCAATAGTGGGCTAAGAGGTGGTTTGTGGTTGAAAGATTTGATGGCATAGGTATACGAGTTGGGAGTGAGTCACCTGTGGAGGCAAATTCTTAACGACTTAGGTTGATGAAATTGGACATGGGAATATTGTAGAGGAGTAGAAGGCTTTTTCTGCTTTAAAATTTTCTTTGCTACTCGTAGTATGGGGAACCTAATAATTTAAACAAGAAAGTGAATGAAGGAAGGCTTTGTTGGCTGCTGACTTTGGAAGGATGTCTAGCCCTTTTTTCCAGCTGCACCACTTGGAAGTATTTTCATATCAGTTGAATGTCACTTGTGAAAATGAGCAAATGCTCTTTTCTAGGTGTCTTTTTTTGTTGGGTCCTTCTTTTGATTCTTTTTGTAAGCATAGATCATGTATAGTTCTCATATGCTATCGATGAGGGTGACTGTATTCTTTTTGTCGCTGTAGGTAGATGTCTAGTTATTGACCCATAA

mRNA sequence

ATGAACGGAATAAAGCCCAAAAGTTCGAATATTCGGAAACCGAAACCCAATAATCTTGACTGGCCGTCACCGGTTGGGACCGGCACTATAAAAGCCCTAACTTGCGCGTTGGCAGGATCCCTTCCCTCGAACTGCGAGATTTCCTCTCTCTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTAACTTCGGGTTAGGGCTTCTTTCTTCCCGCCCTCCACAGTTTCCGCTACTTAATTTGATTCCCACCGGTAGATGTCTAGTTATTGACCCATAA

Coding sequence (CDS)

ATGAACGGAATAAAGCCCAAAAGTTCGAATATTCGGAAACCGAAACCCAATAATCTTGACTGGCCGTCACCGGTTGGGACCGGCACTATAAAAGCCCTAACTTGCGCGTTGGCAGGATCCCTTCCCTCGAACTGCGAGATTTCCTCTCTCTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTAACTTCGGGTTAGGGCTTCTTTCTTCCCGCCCTCCACAGTTTCCGCTACTTAATTTGATTCCCACCGGTAGATGTCTAGTTATTGACCCATAA

Protein sequence

MNGIKPKSSNIRKPKPNNLDWPSPVGTGTIKALTCALAGSLPSNCEISSLCCLSLFRSTSDNFNFGLGLLSSRPPQFPLLNLIPTGRCLVIDP
Homology
[Close]
BLAST of Carg01446 vs. NCBI nr
Match: KAG6579048.1 (hypothetical protein SDJN03_23496, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016572.1 hypothetical protein SDJN02_21682, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 9.0e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MNGIKPKSSNIRKPKPNNLDWPSPVGTGTIKALTCALAGSLPSNCEISSLCCLSLFRSTS 60
          MNGIKPKSSNIRKPKPNNLDWPSPVGTGTIKALTCALAGSLPSNCEISSLCCLSLFRSTS
Sbjct: 1  MNGIKPKSSNIRKPKPNNLDWPSPVGTGTIKALTCALAGSLPSNCEISSLCCLSLFRSTS 60

Query: 61 DNFNFGLGLLSSRPPQFPLLNLIPTGRCLVIDP 94
          DNFNFGLGLLSSRPPQFPLLNLIPTGRCLVIDP
Sbjct: 61 DNFNFGLGLLSSRPPQFPLLNLIPTGRCLVIDP 93

The following BLAST results are available for this feature:
BLAST of Carg01446 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579048.19.0e-46100.00hypothetical protein SDJN03_23496, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg01446 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01446 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01446 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01446-RACarg01446-RAmRNA