CaUC09G178120.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G178120.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr09: 37319185 .. 37323778 (-)
Sequence length	706
RNA-Seq Expression	CaUC09G178120.1
Synteny	CaUC09G178120.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGATGCTTTACGCCATTGATGTTGAAGGTTTGATTTTGGGAAGAGGGTTTTGTTTTTTGGTTGATAGACGAAATGGGTTTGTTTGAAAATGGTTGTTTGTTGGCTTACACTGCACTTAATTGGGTCGTGGGTGGTTGGATCGTATGCTTAATGGATCATTCCATTTATTGGTGCTCTGTTTTTACTTTTTGGGGGTTTCTTTTCCACATTAAAATATGTAAATCTTGTTTGTTTGTTTTTCAGGATTATTTGGCTTGGAGGCGTGGTCTTCGCTCCTTCAAAGCAAAGTATCTACATAATCCTTTGTTGGGATTTATTCGTAATTTCTCATGGAGGAGTTAATTGTTGGTGAATCAAGGAAACACAAGAAATAAGAAAAGCCCACTCTGCTTTCATGGACCCCAGTCATGGTCATGCGGTATGTAGCCTTTTTTTTTTTTTCTTTCCTGAAATTATATTTATCTTCTTCGTGTCCTTTTCTGGTGGCCAATGATGGTCTCTGGACGCTCAAAAAGCCTCCACCAAAGGCAATCGTTTCCTTTCTTTTATAACTATGGTAGGAGATTCAAACTTTCTGACTTTTTTTTTTTTTGTTGACTCTATGTTTACCATTCGAACTAGGCTCGTAAAGACAATAACTAAAGTCATATTGATGGAAGTTCTCTTATTTAGTATTTACCCAACGGAACCAATTTTTATGATGATCTAGTAGTTAAAATAAGAAATAAGTTAAAAAGTTTAAATGCTAGTTTGGTTCATGTAATTTGATTCATTTGTCTCTGTACTTCCAAATGTTCATTTTAAAATTTCTATACTTTAAATTTTGGTTCATTTCAGTTCTTGCATTTTCAATTTTAGTCTTTAAACTTTTAAAATTAAAATGAAATATCAAGGTGACCACGTTTTAAAAGTACAAGGATAAAAAAAAATATATATTTTGAAAGGATAAAGATCAAGATGAATAAAAGTTAGAAGTACAAGAATTACAATGAACACTCAAAATGTTTATAAACCAAAATGAACTAACACCAAAATTGACCATAGCAGTATTTAAACCTAGGACAAAATATATTTTTGGTCTCTGAAGTTTGGACCAGTTGTCTTTTTTATATGAGATGGGCAATTTTAGTTATTGAAGTTTGAAAAAGATTTTAAATAGTCACTATCCTCTTTGGACCGTTAGTTACTAACTCTGTGATGTTGTTGCTGTTAAGTTTGGTTGATTGTATTGCTGATTTGGCAAATAATTAATTAATTTTTTTGTTGACTAGACTCCCTTTCTTTCTTCTCCATTTTCTTTCTCTTCTTCTACGTTGTTATCGCCGGAAGTCCTTGTCGCCCCGTTGATAGGATTGCCACTGCCGGAGAAACACCATTGCCAATTATTTCTTTAAAATCTCTCTCACTAGTTTCCTATTTATGATTTATATGTTTATCTCTATCAATAATCTAAATTATCTCCATTTCCCAAATTCTCAATCTATCTCTCTTTGGTTCCAATTTCCCTCTCTATTTTTCAGATTTTGTATCTACCTTTCTTCATAACTCTATTTCTCTTTCTCTTTCCTTATTCTTCTATTTTTCTCCTTAGAACCCAATTTGAAATTAAAGAGTTCGTTTTTGTTGAAGAAAATCAATCCTTTTCTAGGAACAACTTTCTCCATCACACAGTTCGTTAATATGCATAGAGTGAGTCTTATTGTTTTTCGTTTTTTGATTTGTAATTTTAGATTAAAAAAAAAAAAAAAAAAGAGGAATAAACCCCAAGTTCTGCATTGAGGGTTTTCTTTTTCTTTATTATTATTATTTTTTTTTCTAGACCAACTTTCTACTTACAAATTTAGAACAAGGCTCATCTTCAAATTTGCAGATGTAGAAGTCTCCAGTGCTATTAGTTATCATCGAAGCATTTCTTTTGATGGCGTTACCAAACACCTTTCTTCTGACGATAGCGACAAGCAACTTCCGACGGCAGCTACTTTAACAGAGAAGGGAAGATGAAAGGAATTCTAGTCAAAAAAAAAAAATTATTATTATTATTATTATTTGCCAAATCAGCAGTACAACCAACAAAACTTAACAGCCAAGTTTGCATTTTCAAACTTCAAAGACTAAATAAATACTTAATCCAAACCTTAGGGACCAAAAATGTAGTTTGCTCTTAAACCTAAGTTAAAACGTCAAATTTCATCTTAGATAATGAATTCAAAAGAAATATATAATAGTGTAACTTTTATCGTGCTTAATAAATTTTAAAATTTTAAAATATTAATAAGTTCTTAGATGCGATAGGTTTTCATAATCAATTAAATATATTAAACTCAAAATTGAATGTCACAATCTTATAAAACACAAAATTCAATTACTTATTCCACACTTCTAAATTTTAGAATCATCAAAATTGAAAATGAATCTCATGTAACTTCAAAAGCTCTAGAACAAAATTTGGAGTTTAACTTTAAAGACATTTTAGAAAAAAAATCAATGTTAACCATAAACTTGTTTGGTTGTATCAATTTGAACCTTAAACTTTCAATTTTATCAAGTTTGACACTTACTTTAACAAATGTTGCAAGTTTTACCCTTGGTTCAATTTTCATTAATTCAACCATTAATTAATTTTAATAGAAAACAATTTTCATAAACTTATTAATTTCAATGAAATAAAGTTTTTCACAATAATAAGGTTAACCAATCCACTAATTAACTATTGAACAATTTTGCCTAAATTCATGAATTTTCAACAAAAAGGAAAAAAAAACTTTTAATATCATTTGTCTGTAAAGCTTTGTAAATTTTATATCGTACATATGTTTTATGATTTCTTGGATATATAAGTGAACTTTTTTATTTTTTTTGTAACTATGTTTGGAGGAAGAACTTTGAGTTAAAATTGTAACAATTTTAGGTCAAAGTTAAGATTTTGAAACGCATCTAAGTTTAATGCGCAAGTGATACACGTTAGATGAAAATTGAATTTTTCCCAAAATTATTTTGATTTCAATGACTTGTTTTGAGAATTATACATCTGATTTTGGAATGGCTTTGAATTAAAGTGTACACCTGGATTAGCTTACCTTACTTTCCCCCCCTCCTCTATGCTTTCCATAAGAAAAGGAAAGTAGATTAAGTTACAGAAGAGTGTTGGAGACTTGATCGGCAATAAATTAAAATTATTATTATTATTTAGCCATCATATGAGAGAATTAGAATAGTAAATATTAGGAATGGGAACGAAAATTGACATTTCTTTGATGTCAGTTTAATCATAATGGTTTGCTATTGGAATTACGTTAATATTCCTATTGCTTATTATTTGTATTAGGAAAATTAAACAAACATATAACTACAATTATCTAAATACCCCTTAAAAAAGAAAAAGAAAAAGAAGCTAGGACAACTTTTTTTTAAAAGGAAGAGCAATTATGTGGGGAGGACATCATTTGATTTTAAATGTTATATTATTTAAAAATTATGGGTAGAGTAGAAGAGATAGGATGAAAATGATTTAAAATAGCTTGTGATCAGGTCCATAGAATAGGGAGAAAGAGAAAGAGATTAAAGAGAATTTTTACCCTTATTGCTCCCTGTGATTTTAATGGATTAAATTAAAGTCATCCCTACAATATTGTTCTTATACGTTGGTTTTTCTTTCTTATTTCGTGTTGGTGTGCCTCCTAACTCTTTGACGATGCACAAAGGACAATATTATATCATCTAGTGATTTAAGAACTCTCATTGAAGATGCACAAGGGACAATATGGATAGTTAACATGTTACTAGTATACTATGACAATAACAAAGACTCATTCTCCATTATTTTTTTTTTTTAAAAATAGAGCAAAGGACATTAACATTCAAAATTTAGTGGTAGGATATAAAGTATGTTTGGGCTAAGGAGTTGGTGGAATAGGAGTTTAGGAGAGTCTACTCTTTGTTTGACTCAAAGACTAAATATCATCGATTTTATAACTTATTAACTTCTTACACAGTGGGTTCTAAGAGTTGACTTTATAACTTCATTTTTTTTTTCGTCGTAGAGGTCTATTAGAGACGTGTGTTTTGAAGAAAGGTATGAGAAAGTGGGACATGGGAAGCAGAGGAATCCTAAGGAATCTAGTTTTGAGTTGAAGAATCCCCAAATTGCCAAGATTAGAAGCAACTTCCAAAGGGAATAGCCAACACACTCATCCTTTCCTTGTTATTCAAAAGATAAAAGAAACCCATTTAATATGCTTATGGAGAGGTCAGGGTTACTGGATGGCCCCATTCCATTTTATGATTTGAAATCTCAAATCTCATCCATGCACTTGTCCCTTCTTAGCTTTCTGTCCTCTTCTATTGTATCAAATCAAAAAGACAACACTGTGACCAACTTTGAAGGATGTGTTCTTATCATTTTCTGTACGTGTCTTCTTATCATTATTCCACTATTTATGATCTTATAAATGAAGGCCATAAAAGGGAATAAGAGAAGGGAAGGCTCCAATAATTCCTTTCAATTAAAAGTCTCTGTTTTGGTACTTTGTTAGATCAGCTACTTATTCTAAAGTTGAAAAACTTCAAACTTACAAACTTATTCTTTCA

mRNA sequence

ATGTTGGTGATGCTTTACGCCATTGATGTTGAAGGTTTGATTTTGGGAAGAGGGTTTTGTTTTTTGGTTGATAGACGAAATGGGATTATTTGGCTTGGAGGCGTGGTCTTCGCTCCTTCAAAGCAAAGTATCTACATAATCCTTTGTTGGGATTTATTCAGGTCTATTAGAGACGTGTGTTTTGAAGAAAGGTATGAGAAAGTGGGACATGGGAAGCAGAGGAATCCTAAGGAATCTAGTTTTGAGTTGAAGAATCCCCAAATTGCCAAGATTAGAAGCAACTTCCAAAGGGAATAGCCAACACACTCATCCTTTCCTTGTTATTCAAAAGATAAAAGAAACCCATTTAATATGCTTATGGAGAGGTCAGGGTTACTGGATGGCCCCATTCCATTTTATGATTTGAAATCTCAAATCTCATCCATGCACTTGTCCCTTCTTAGCTTTCTGTCCTCTTCTATTGTATCAAATCAAAAAGACAACACTGTGACCAACTTTGAAGGATGTGTTCTTATCATTTTCTGTACGTGTCTTCTTATCATTATTCCACTATTTATGATCTTATAAATGAAGGCCATAAAAGGGAATAAGAGAAGGGAAGGCTCCAATAATTCCTTTCAATTAAAAGTCTCTGTTTTGGTACTTTGTTAGATCAGCTACTTATTCTAAAGTTGAAAAACTTCAAACTTACAAACTTATTCTTTCA

Coding sequence (CDS)

ATGTTGGTGATGCTTTACGCCATTGATGTTGAAGGTTTGATTTTGGGAAGAGGGTTTTGTTTTTTGGTTGATAGACGAAATGGGATTATTTGGCTTGGAGGCGTGGTCTTCGCTCCTTCAAAGCAAAGTATCTACATAATCCTTTGTTGGGATTTATTCAGGTCTATTAGAGACGTGTGTTTTGAAGAAAGGTATGAGAAAGTGGGACATGGGAAGCAGAGGAATCCTAAGGAATCTAGTTTTGAGTTGAAGAATCCCCAAATTGCCAAGATTAGAAGCAACTTCCAAAGGGAATAG

Protein sequence

MLVMLYAIDVEGLILGRGFCFLVDRRNGIIWLGGVVFAPSKQSIYIILCWDLFRSIRDVCFEERYEKVGHGKQRNPKESSFELKNPQIAKIRSNFQRE

Homology

[Close]

BLAST of CaUC09G178120.1 vs. NCBI nr
Match: KAG7037301.1 (hypothetical protein SDJN02_00926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 39/77 (50.65%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 1   MLVMLYAIDVEGLILGRGFCFLVDRRNGIIWLGGVVFAPSKQSIYIILCWDLFRSIRDVC 60
           MLV+LY IDVEGLI GRG           IWL GVVFAPSKQSIY      L   IR+  
Sbjct: 63  MLVVLYDIDVEGLIFGRG-----------IWLRGVVFAPSKQSIYFN---PLLGFIRNFA 122

Query: 61  FEERYEKVGHGKQRNPK 78
           +  R   V  G  RN K
Sbjct: 123 WRSRL-LVNQGSTRNKK 124

The following BLAST results are available for this feature:

BLAST of CaUC09G178120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037301.1	2.4e-04	50.65	hypothetical protein SDJN02_00926, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CaUC09G178120.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G178120.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G178120.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC09G178120	CaUC09G178120	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G178120.1-exon	CaUC09G178120.1-exon-Ciama_Chr09:37319185..37319731	exon
CaUC09G178120.1-exon	CaUC09G178120.1-exon-Ciama_Chr09:37323453..37323528	exon
CaUC09G178120.1-exon	CaUC09G178120.1-exon-Ciama_Chr09:37323696..37323778	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G178120.1-three_prime_utr	CaUC09G178120.1-three_prime_utr-Ciama_Chr09:37319185..37319593	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G178120.1-cds	CaUC09G178120.1-cds-Ciama_Chr09:37319594..37319731	CDS
CaUC09G178120.1-cds	CaUC09G178120.1-cds-Ciama_Chr09:37323453..37323528	CDS
CaUC09G178120.1-cds	CaUC09G178120.1-cds-Ciama_Chr09:37323696..37323778	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC09G178120.1	CaUC09G178120.1-protein	polypeptide