CaUC09G177720.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G177720.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cleavage and polyadenylation specificity factor subunit 6
Location	Ciama_Chr09: 36975264 .. 36976955 (-)
Sequence length	312
RNA-Seq Expression	CaUC09G177720.1
Synteny	CaUC09G177720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTATATGGCTTAATAAAGTTGACATTTAATTAAAATATTGTTAAACAGAGAAAAAAAAATGATTGTATGGTGATTTTTTTCTTTGTTTTTTTGAGGGAAGGGATCAATCCTCATCTTCATCATTGACTATTCATCCAATGCAAGTTAGGTATAAAGTTGAGGAAACAAAAAGTCCAATATATTAATGCAGGTGCGTTTTTCAAATTAGGGTTTCTATCTCTATATATATTATCGTTTCTGCACTCATTTCATTATTGGACTGTCAACGATCTTTAAATGTTATCTGCTTCTACTCACTCCCTATTTTGTAAGTTCTTCTATCCACTTTGTGATTCTTTCTTGTATTTGAATTTTACTTTTGAATGAATACTAAAAATTAGTGATGGATGAAGGCGAGGGAGGGTGTGGAACAAATTGACCAGTTCCATAGAAATGAAGTGACATCCGTTGTTGTTGATGGAGGGTTTCTTAGGCAAAGATGAAGATAAATATGAGGCCCTATAAAATGATGTTAATGTTAGGGAAGGGTTTCTCTAGTCCTCGAAGAAGAACAATGATTTGGGATATAAGAAGGGGGAGGAGCCGAAGATCAAAATGAGCCTACTTCAGTTGCAGTTGTCGCTCCGATACTTGGGGTTGGCGGTGCTGCGACTAAAGTCGGTGGTCTAGGAGATGGCCCGAGGGTTTCAAAGAGAGTTACAACTGTATTCCGAATTTTAAGAATAAATGAGATGTATACGAGAGGAGGGTTGGGATCTAGGCCTCTGGTGGGTGCTGGAGGTGAAATTAGGGTTAAATTAGGCCAAGGGGATGAATGTAGGAATAATTGCATAAAAAACTTATTTTAAAGGCCCAAAATGGCAAATATCCTAATTTCTTTTTTAAAAAATGACATATAATCCTTAGATGGTGTCATGTCATGACCATGTGAAATTACGGTATTGCCCTTCTTGATATTTTTTTTCTTTTTTTCTTCTCCCCCAGTGTTCGACTCTTCTTCTTTTTTTTTTTTTTTTTCTTTTTCCTTTTTTATCTTCTTCACCGGCATTCGACTCCCTCTCTCTTTCTTTTTTCTTTTTTTCTTCTCCCCCAGCGTTCGACTCTTCTTCTTTTTTTTTTTACTTATTTTTCCCTCTCTTTTTTTTTCTTTTTCCTTTTTTATCTTCTTCACCGGCATTCGACTCCCTCTCTCTTTCTTTTTTCTTTTTTTCCCCTTCTTCTCTAGAAATCCCTCTCTCTTTTTTTCTTCTTTTCCAACTTCTTCTTCTTTGACACGACGAGTCCATACGAGCAGCTCTGACATGACCAACTTCGGTGAGTGAGAGCGAGAGATGGATGAAAGTGATTGGGAGTGAGGAAAGGAAGGGAGAGCGAGATGGGCTTTTCCGTGTGCACAAGTTCATTTTGGTAATTTCATCCGAACTTGACGTCAGCAAAGGGTCATTTGGCATTTTTTTTTTTTTAAAACAGGGTCGTTTGACATTTTAGGCTTAATTTTTAGGTTATCCGTACAAATTTTTCGTAAATTTAATGAATTGGAAGAGAGAAGTAGTAATAATGTAGCTGAGAATCCAGATCCTCACCAACATCATCACTAGCCTCATCATGAAGGAGTTTTAGCAAATGCAAGAAATGTAAAGAGTGAAGGTTTGCTTAGGCAAAGTGGTGGAGTGAAGGTGAATTGA

mRNA sequence

ATGGAAGGGGGAGGAGCCGAAGATCAAAATGAGCCTACTTCAGTTGCAGTTGTCGCTCCGATACTTGGGGTTGGCGGTGCTGCGACTAAAGTCGGTGGTCTAGGAGATGGCCCGAGGGTTTCAAAGAGAGTTACAACTGTATTCCGAATTTTAAGAATAAATGAGATGTATACGAGAGGAGGGTTGGGATCTAGGCCTCTGGTGGGTGCTGGAGGTGAAATTAGGCCTCATCATGAAGGAGTTTTAGCAAATGCAAGAAATGTAAAGAGTGAAGGTTTGCTTAGGCAAAGTGGTGGAGTGAAGGTGAATTGA

Coding sequence (CDS)

ATGGAAGGGGGAGGAGCCGAAGATCAAAATGAGCCTACTTCAGTTGCAGTTGTCGCTCCGATACTTGGGGTTGGCGGTGCTGCGACTAAAGTCGGTGGTCTAGGAGATGGCCCGAGGGTTTCAAAGAGAGTTACAACTGTATTCCGAATTTTAAGAATAAATGAGATGTATACGAGAGGAGGGTTGGGATCTAGGCCTCTGGTGGGTGCTGGAGGTGAAATTAGGCCTCATCATGAAGGAGTTTTAGCAAATGCAAGAAATGTAAAGAGTGAAGGTTTGCTTAGGCAAAGTGGTGGAGTGAAGGTGAATTGA

Protein sequence

MEGGGAEDQNEPTSVAVVAPILGVGGAATKVGGLGDGPRVSKRVTTVFRILRINEMYTRGGLGSRPLVGAGGEIRPHHEGVLANARNVKSEGLLRQSGGVKVN

Homology

[Close]

BLAST of CaUC09G177720.1 vs. NCBI nr
Match: XP_022981402.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-08
Identity = 58/148 (39.19%), Postives = 65/148 (43.92%), Query Frame = 0


Query: 7   EDQNEPTSVAVVAP-----ILGVGGAATKVGGLGD-GPRVSKRVTTVFR---ILRINEMY 66
           E + EP   A VAP     I GVGG AT+V GLGD GP VS R T  +     LR NEM 
Sbjct: 70  EPKREPP--AAVAPSSGASIPGVGGGATEVSGLGDGGPSVSVRPTEGYNQIPDLRTNEMA 129

Query: 67  TRGGLGSRPLVGAGGEIR------------------------------------------ 104
            RGG GS P +G GG IR                                          
Sbjct: 130 IRGGAGSGPPIGGGGGIRVELGQGSKTNELDERSSNNAAAHQAPQQQQQQQQQQQQHHPQ 189

[Close]

BLAST of CaUC09G177720.1 vs. NCBI nr
Match: XP_022941468.1 (uncharacterized protein LOC111446757 [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 6.3e-08
Identity = 57/144 (39.58%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 7   EDQNEPTSVAVVAP-----ILGVGGAATKVGGLGD-GPRVSKRVTTVFR---ILRINEMY 66
           E + EP   A VAP     I GVGG A +V GLGD GP VS R T  +     LR NEM 
Sbjct: 70  EPKREPP--AAVAPSSGASIPGVGGGAMEVSGLGDGGPSVSVRPTEGYNQIPDLRTNEMA 129

Query: 67  TRGGLGSRPLVGAGGEIR--------------------------------------PHHE 104
            RGG GS P +G GG IR                                      P   
Sbjct: 130 IRGGAGSGPPIGGGGGIRVELGQGSKTNELEERSSNNAAAHQPPQQQQQQQQHHPQPPQG 189

[Close]

BLAST of CaUC09G177720.1 vs. NCBI nr
Match: XP_023524756.1 (uncharacterized protein LOC111788596 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 57/150 (38.00%), Postives = 65/150 (43.33%), Query Frame = 0


Query: 7   EDQNEPTSVAVVAP-----ILGVGGAATKVGGLGD-GPRVSKRVTTVFR---ILRINEMY 66
           E + EP   A VAP     I GVGG A +V G+GD GP VS R T  +     LR NEM 
Sbjct: 70  EPKMEPP--AAVAPSSGASIPGVGGGAMEVSGVGDGGPSVSVRPTEGYNQIPDLRTNEMA 129

Query: 67  TRGGLGSRPLVGAGGEIR------------------------------------------ 104
            RGG GS P +G GG IR                                          
Sbjct: 130 IRGGAGSGPPIGGGGGIRVELGQGSKTNELEERSSNNAAAHQAPQQQQQQQQQQQQQQHH 189

[Close]

BLAST of CaUC09G177720.1 vs. NCBI nr
Match: KAG6607749.1 (Cleavage and polyadenylation specificity factor subunit, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-07
Identity = 57/148 (38.51%), Postives = 64/148 (43.24%), Query Frame = 0


Query: 7   EDQNEPTSVAVVAP-----ILGVGGAATKVGGLGD-GPRVSKRVTTVFR---ILRINEMY 66
           E + EP   A VAP     I GVGG A +V GLGD GP VS R T  +     LR NEM 
Sbjct: 70  EPKMEPP--AAVAPSSGASIPGVGGGAMEVSGLGDGGPSVSVRPTEGYNQIPDLRANEMA 129

Query: 67  TRGGLGSRPLVGAGGEIR------------------------------------------ 104
            RGG GS P +G GG IR                                          
Sbjct: 130 IRGGAGSGPPIGGGGGIRVELGQGSKTNELEERSSNNAAAHQAPQQHQQQQQHQQQHHPQ 189

[Close]

BLAST of CaUC09G177720.1 vs. NCBI nr
Match: XP_038897113.1 (uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-07
Identity = 51/133 (38.35%), Postives = 59/133 (44.36%), Query Frame = 0


Query: 19  APILGVGGAATKVGGLGDGPR-VSKRVTTVFR---ILRINEMYTRGGLGSRPLVGAGGEI 78
           A I GVGG AT+V GLGDG   VS+RVT  +     LR NEM  RGG+GS P VG GG I
Sbjct: 84  ASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIPDLRTNEMAVRGGVGSGPPVGGGGGI 143

Query: 79  R--------------------------------------------PHHEGVLANARNVKS 104
           R                                            P   GVL N  +V++
Sbjct: 144 RVELGQGSKTSELEERSSNNVVAHQAQHQHQQQPQPQPQPQHHHQPPQSGVLGNPGSVEN 203

[Close]

BLAST of CaUC09G177720.1 vs. ExPASy TrEMBL
Match: A0A6J1ITV5 (cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita maxima OX=3661 GN=LOC111480534 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 58/148 (39.19%), Postives = 65/148 (43.92%), Query Frame = 0


Query: 7   EDQNEPTSVAVVAP-----ILGVGGAATKVGGLGD-GPRVSKRVTTVFR---ILRINEMY 66
           E + EP   A VAP     I GVGG AT+V GLGD GP VS R T  +     LR NEM 
Sbjct: 70  EPKREPP--AAVAPSSGASIPGVGGGATEVSGLGDGGPSVSVRPTEGYNQIPDLRTNEMA 129

Query: 67  TRGGLGSRPLVGAGGEIR------------------------------------------ 104
            RGG GS P +G GG IR                                          
Sbjct: 130 IRGGAGSGPPIGGGGGIRVELGQGSKTNELDERSSNNAAAHQAPQQQQQQQQQQQQHHPQ 189

[Close]

BLAST of CaUC09G177720.1 vs. ExPASy TrEMBL
Match: A0A6J1FS69 (uncharacterized protein LOC111446757 OS=Cucurbita moschata OX=3662 GN=LOC111446757 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 57/144 (39.58%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 7   EDQNEPTSVAVVAP-----ILGVGGAATKVGGLGD-GPRVSKRVTTVFR---ILRINEMY 66
           E + EP   A VAP     I GVGG A +V GLGD GP VS R T  +     LR NEM 
Sbjct: 70  EPKREPP--AAVAPSSGASIPGVGGGAMEVSGLGDGGPSVSVRPTEGYNQIPDLRTNEMA 129

Query: 67  TRGGLGSRPLVGAGGEIR--------------------------------------PHHE 104
            RGG GS P +G GG IR                                      P   
Sbjct: 130 IRGGAGSGPPIGGGGGIRVELGQGSKTNELEERSSNNAAAHQPPQQQQQQQQHHPQPPQG 189

[Close]

BLAST of CaUC09G177720.1 vs. ExPASy TrEMBL
Match: A0A0A0K3G6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 52/139 (37.41%), Postives = 61/139 (43.88%), Query Frame = 0


Query: 12  PTSVAVVAPILGVGGAATKVGGLGD--GPRVSKRVTTVFR---ILRINEMYTRGGLGSRP 71
           P   +  A I G+GG AT+V GLGD  G  VS+RVT  +     LR NEM  RGG+GS P
Sbjct: 78  PVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIPDLRTNEMAIRGGVGSGP 137

Query: 72  LVGAGGEIR------------------------------------------PHHEGVLAN 104
            VG G  IR                                          P   GVL N
Sbjct: 138 PVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPPQPQPQPQPQPQHHHQPPQSGVLGN 197

[Close]

BLAST of CaUC09G177720.1 vs. ExPASy TrEMBL
Match: A0A5D3CC60 (Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00770 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 51/132 (38.64%), Postives = 58/132 (43.94%), Query Frame = 0


Query: 19  APILGVGGAATKVGGLGD--GPRVSKRVTTVFR---ILRINEMYTRGGLGSRPLVGAGGE 78
           A I G+GG AT+V GLGD  G  VS+RVT  +     LR NEM  RGG GS P VG G  
Sbjct: 85  ASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQIPDLRTNEMAIRGGAGSGPPVGGGVG 144

Query: 79  IR------------------------------------------PHHEGVLANARNVKSE 104
           IR                                          P   GVL N  +V++E
Sbjct: 145 IRVELGQGSKPIELEERSSNNVAGHQAPQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENE 204

[Close]

BLAST of CaUC09G177720.1 vs. ExPASy TrEMBL
Match: A0A5D3C9W4 (Putative PE-PGRS family protein PE_PGRS54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00790 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 50/132 (37.88%), Postives = 58/132 (43.94%), Query Frame = 0


Query: 19  APILGVGGAATKVGGLGD--GPRVSKRVTTVFRIL---RINEMYTRGGLGSRPLVGAGGE 78
           A I G+GG AT+V GLGD  G  VS+RVT  +  +   R NEM  RGG+GS P VG G  
Sbjct: 13  ASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQIPDSRTNEMAIRGGVGSGPPVGGGVG 72

Query: 79  IR------------------------------------------PHHEGVLANARNVKSE 104
           IR                                          P   GVL N   V++E
Sbjct: 73  IRVELGQGSKPNELEERSSNNVAGHQAPQQPQLQPQPQPQHHHQPPQSGVLGNPGGVENE 132

The following BLAST results are available for this feature:

BLAST of CaUC09G177720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981402.1	3.7e-08	39.19	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita m...	[more]
XP_022941468.1	6.3e-08	39.58	uncharacterized protein LOC111446757 [Cucurbita moschata]	[more]
XP_023524756.1	1.4e-07	38.00	uncharacterized protein LOC111788596 [Cucurbita pepo subsp. pepo]	[more]
KAG6607749.1	3.1e-07	38.51	Cleavage and polyadenylation specificity factor subunit, partial [Cucurbita argy...	[more]
XP_038897113.1	7.0e-07	38.35	uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida]	[more]

BLAST of CaUC09G177720.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G177720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ITV5	1.8e-08	39.19	cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita...	[more]
A0A6J1FS69	3.1e-08	39.58	uncharacterized protein LOC111446757 OS=Cucurbita moschata OX=3662 GN=LOC1114467...	[more]
A0A0A0K3G6	3.4e-07	37.41	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV...	[more]
A0A5D3CC60	1.3e-06	38.64	Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. m...	[more]
A0A5D3C9W4	1.7e-06	37.88	Putative PE-PGRS family protein PE_PGRS54 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of CaUC09G177720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC09G177720	CaUC09G177720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G177720.1-exon	CaUC09G177720.1-exon-Ciama_Chr09:36975264..36975350	exon
CaUC09G177720.1-exon	CaUC09G177720.1-exon-Ciama_Chr09:36976158..36976375	exon
CaUC09G177720.1-exon	CaUC09G177720.1-exon-Ciama_Chr09:36976949..36976955	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G177720.1-cds	CaUC09G177720.1-cds-Ciama_Chr09:36975264..36975350	CDS
CaUC09G177720.1-cds	CaUC09G177720.1-cds-Ciama_Chr09:36976158..36976375	CDS
CaUC09G177720.1-cds	CaUC09G177720.1-cds-Ciama_Chr09:36976949..36976955	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC09G177720.1	CaUC09G177720.1-protein	polypeptide