CaUC09G177450.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G177450.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	30S ribosomal protein S10
Location	Ciama_Chr09: 36753432 .. 36755420 (+)
Sequence length	742
RNA-Seq Expression	CaUC09G177450.1
Synteny	CaUC09G177450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAAATTAAAAAAAAAAAAAAAAATACACACGGAAGTTTATTTGGATAACGCTTGCGACTCTACCAGCAAAAAGCTTCCATTCTTTCAGCTTCCGCCATTGATATACAAAGGAACTTCCATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGTTTGTGATGATTTTGTTCGAAATGGAGCAAAATGTTACAATTTCTCTTTGTTTTGTAATGGGTGTAAGAATTTTTGTTCTTGGGTTTGTTTCCTATTTTTTTGGGGCTGTGGCTCAGGTTGTAATACACTGGTGGTGTTCTAAATTTCCATTTCGTTTCCAATTTCATTGCAAGTAGCTAAGGGATTTCCATTTTATTTCTTTAAGGTAATGGATTGGACAATGTTTGTGTTTTTGTCTAATGTTATGTTCATGTTTAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGGTAAATTTTATGTTGTTCAGATAATGTTTTACTCTAGCTTTTCTTGTGGCTTTCTGAAGATATAAAATGGTCTGCAGAGAAACTTCTGAAACCAAAACCTAACTCTGAAATATATATTAGTTTTGATGAGTAAAGAAAGAGTGGCCAGAAAATATACAATGGAATCGTGTAATGAGATTATATCAGTATCATGATTCATGATCCTGCTAAGTTGACTGAGTAAGGTCATGAGTAAATGGAAAATTTAAATTGTCAGTATCAGTTATAGTTGTAGTGTTGCCTTAAAGGCTAATGACATGTTTGGAGTGTTTCTAAAATGGTTAAAATCACTTTTGTCATTTTCACTCCAAAAAAAATGCTTTTAATTATTCAAAATCAGTTTTAATAGTATGAAAATTGTGTTTAAAAGCGTAAAATTAAATATTGATTTGATTTTGAGTGTTTAAAGGTGTGCTTCGAAGTGATTTTAAACATAATAAAAATGATTTTAACCATTTCAAAATCACTCCAAGTATGCACTAAATAATGTGATGAATGTAATGCAGTATTGAAAGTTCCTAATGTAGTGGGATTGAGTGGAATGTTATGGTTCCATACTCCTTTGTATGCTAAAACAACCTCCTCAACTGGGTAGTGCATAGTTCTCCAATTGTACAATGCCTCTGCGGGCTTAATTTATGTGACTTATTGGCCAAGGCCATAGTTACAAAAAGGCCTAGTGAGCAAAGTCCAAAGAGAGACATTAAACCTGGCCACCTCTCAAAATGGATACCAAGATATTCACTTTGTACCTTTATATTGACAAAATGCCAATATGGTCTTCAGCAGGTCTCAGTGTTGTGTTATTTGATTTGTTTGATTATCTGTGGTATGAGGTGTGTCTAGGGACTTATCTTAGCCAATTGGTTTTGTAATTGATATTTGATAGTGTCCATCCTTTTCTTATGTTTGGCCGATTTTAACGAACTAAAGATGTTTTGGTTTCAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

mRNA sequence

GGGAAAATTAAAAAAAAAAAAAAAAATACACACGGAAGTTTATTTGGATAACGCTTGCGACTCTACCAGCAAAAAGCTTCCATTCTTTCAGCTTCCGCCATTGATATACAAAGGAACTTCCATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL

Homology

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BLAST of CaUC09G177450.1 vs. NCBI nr
Match: XP_008462962.2 (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 387.1 bits (993), Expect = 9.4e-104
Identity = 200/206 (97.09%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPK LPF  SSSTALKLKPLQFSLPSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSSDTIEPPPEILEGSGVATLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of CaUC09G177450.1 vs. NCBI nr
Match: XP_038899555.1 (30S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S ribosomal protein S10, chloroplastic [Benincasa hispida])

HSP 1 Score: 385.2 bits (988), Expect = 3.6e-103
Identity = 199/206 (96.60%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLFS LSSHSSKPKLLPFS  SSTALKLKPLQFSLP+TRVY APEV
Sbjct: 1   MAISSLSATIIPSPTLFSSLSSHSSKPKLLPFSGLSSTALKLKPLQFSLPTTRVYVAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSSDTIEPPPEILEGSGVATLEGEDFE PGTSAL IGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALGIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

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BLAST of CaUC09G177450.1 vs. NCBI nr
Match: XP_004150471.1 (30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651997.1 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_031744994.1 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >KAE8645988.1 hypothetical protein Csa_015449 [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPK  PF ASSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGV+TLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of CaUC09G177450.1 vs. NCBI nr
Match: XP_022940678.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 369.4 bits (947), Expect = 2.0e-98
Identity = 191/206 (92.72%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF P+SS SSKPKLLPFSASS++  KL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS  TIEPPPEILEGSG A LEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+D+ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDSARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of CaUC09G177450.1 vs. NCBI nr
Match: KAG7037344.1 (30S ribosomal protein S10, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 369.0 bits (946), Expect = 2.7e-98
Identity = 191/206 (92.72%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF P+SS SSKPKLLPFSASS++  KL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS  TIEPPPEILEGSG A LEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy Swiss-Prot
Match: Q9M4Y3 (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 9.9e-64
Identity = 144/212 (67.92%), Postives = 158/212 (74.53%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPST------RV 60
           MA SSLS TI+ SP   S  SS  +KP++   S  SS +   + L  S PS+      RV
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKL 120
           +AAPEVL+S +T  P   + EGS              TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET-GPESYVEEGS-------------ETSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQIMDAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy Swiss-Prot
Match: Q9LK61 (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.7e-61
Identity = 138/212 (65.09%), Postives = 162/212 (76.42%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSS---KPKLLPFSASS---STALKLKPLQFSLPSTRV 60
           MA+S++S+ ++PS  +  P SS SS   K  LLP S++    S+ +  KP   S+  T+V
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKP---SVSLTKV 60

Query: 61  YAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKL 120
           +A P      DT++P PEIL+            E P +S++S+  D DK+APKQKIRIKL
Sbjct: 61  FAVP------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QR+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy Swiss-Prot
Match: P82162 (30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS10 PE=1 SV=2)

HSP 1 Score: 218.0 bits (554), Expect = 9.9e-56
Identity = 135/215 (62.79%), Postives = 150/215 (69.77%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTR------- 60
           MA SS+SA ++ SP      SS S+K     FS  SS  L+ + L  +L S         
Sbjct: 1   MATSSISAALL-SPLTLRNASSSSTKQ---DFSTLSSLNLR-RTLTPTLQSGHTLSNSSN 60

Query: 61  --VYAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIR 120
              +AAP  L          E+LE S  +  +G +     TS +SI  D D++APKQKIR
Sbjct: 61  FATFAAPGAL----------EVLETSPDSFEDGSE-----TSKISIAADSDQMAPKQKIR 120

Query: 121 IKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEI 180
           IKLRSYWVPLIEDSCKQIMDAAR TNAK MGPVPLPTKKRIYCVLKSPHVHKDARFHFEI
Sbjct: 121 IKLRSYWVPLIEDSCKQIMDAARTTNAKIMGPVPLPTKKRIYCVLKSPHVHKDARFHFEI 180

Query: 181 RTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           RTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 RTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 195

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy Swiss-Prot
Match: P17009 (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.0e-33
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy Swiss-Prot
Match: B7K833 (30S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 107 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 166
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 167 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy TrEMBL
Match: A0A1S3CI46 (30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224 PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.6e-104
Identity = 200/206 (97.09%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPK LPF  SSSTALKLKPLQFSLPSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSSDTIEPPPEILEGSGVATLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy TrEMBL
Match: A0A0A0LEH6 (Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.6e-102
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPK  PF ASSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGV+TLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy TrEMBL
Match: A0A6J1FPZ5 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446197 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.8e-99
Identity = 191/206 (92.72%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF P+SS SSKPKLLPFSASS++  KL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS  TIEPPPEILEGSG A LEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+D+ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDSARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy TrEMBL
Match: A0A6J1F6U3 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442692 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.9e-98
Identity = 191/206 (92.72%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSP+LF PLSS   KP+ LPFS SSSTALKLKPL FSLPS+RVYAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSSD  EPPPEILE SG ATLEGEDFEAPGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of CaUC09G177450.1 vs. ExPASy TrEMBL
Match: A0A6J1J2J9 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480677 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 190/206 (92.23%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF P+SS SSKPKLLPFSASS++  KL PLQFSL STRVYAAPEV
Sbjct: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS  T EPPPEILEGSG A LEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 67  LDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 126

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 127 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 186

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 187 LYPTAQTIDSLMQLDLPAGVDVEVKL 212

[Close]

BLAST of CaUC09G177450.1 vs. TAIR 10
Match: AT3G13120.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-62
Identity = 138/212 (65.09%), Postives = 162/212 (76.42%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSS---KPKLLPFSASS---STALKLKPLQFSLPSTRV 60
           MA+S++S+ ++PS  +  P SS SS   K  LLP S++    S+ +  KP   S+  T+V
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKP---SVSLTKV 60

Query: 61  YAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKL 120
           +A P      DT++P PEIL+            E P +S++S+  D DK+APKQKIRIKL
Sbjct: 61  FAVP------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QR+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of CaUC09G177450.1 vs. TAIR 10
Match: AT3G13120.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-62
Identity = 138/212 (65.09%), Postives = 162/212 (76.42%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFSPLSSHSS---KPKLLPFSASS---STALKLKPLQFSLPSTRV 60
           MA+S++S+ ++PS  +  P SS SS   K  LLP S++    S+ +  KP   S+  T+V
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKP---SVSLTKV 60

Query: 61  YAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKL 120
           +A P      DT++P PEIL+            E P +S++S+  D DK+APKQKIRIKL
Sbjct: 61  FAVP------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QR+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

The following BLAST results are available for this feature:

BLAST of CaUC09G177450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462962.2	9.4e-104	97.09	PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo]	[more]
XP_038899555.1	3.6e-103	96.60	30S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S...	[more]
XP_004150471.1	1.1e-101	95.15	30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651997.1 30S r...	[more]
XP_022940678.1	2.0e-98	92.72	30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata]	[more]
KAG7037344.1	2.7e-98	92.72	30S ribosomal protein S10, chloroplastic [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of CaUC09G177450.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M4Y3	9.9e-64	67.92	30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=354...	[more]
Q9LK61	2.7e-61	65.09	30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82162	9.9e-56	62.79	30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=R...	[more]
P17009	9.0e-33	66.33	Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 ...	[more]
B7K833	3.4e-32	62.00	30S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 G...	[more]

BLAST of CaUC09G177450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CI46	4.6e-104	97.09	30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224...	[more]
A0A0A0LEH6	5.6e-102	95.15	Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7690...	[more]
A0A6J1FPZ5	9.8e-99	92.72	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1F6U3	2.9e-98	92.72	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1J2J9	3.7e-98	92.23	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CaUC09G177450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13120.1	1.9e-62	65.09	Ribosomal protein S10p/S20e family protein	[more]
AT3G13120.2	1.9e-62	65.09	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 109..122 score: 42.58 coord: 165..179 score: 52.82 coord: 144..159 score: 53.37
IPR001848	Ribosomal protein S10	TIGRFAM	TIGR01049	TIGR01049	coord: 108..205 e-value: 1.2E-39 score: 132.6
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..206
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 107..206 score: 24.177229
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 111..205 e-value: 3.9E-51 score: 185.9
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 111..205 e-value: 1.9E-32 score: 111.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 98..206 e-value: 3.7E-41 score: 141.7
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 109..206
None	No IPR available	PANTHER	PTHR11700:SF31	BNAC05G40270D PROTEIN	coord: 1..206
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 133..148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC09G177450	CaUC09G177450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G177450.1-exon	CaUC09G177450.1-exon-Ciama_Chr09:36753432..36753801	exon
CaUC09G177450.1-exon	CaUC09G177450.1-exon-Ciama_Chr09:36754062..36754121	exon
CaUC09G177450.1-exon	CaUC09G177450.1-exon-Ciama_Chr09:36755109..36755420	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G177450.1-five_prime_utr	CaUC09G177450.1-five_prime_utr-Ciama_Chr09:36753432..36753552	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G177450.1-cds	CaUC09G177450.1-cds-Ciama_Chr09:36753553..36753801	CDS
CaUC09G177450.1-cds	CaUC09G177450.1-cds-Ciama_Chr09:36754062..36754121	CDS
CaUC09G177450.1-cds	CaUC09G177450.1-cds-Ciama_Chr09:36755109..36755420	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC09G177450.1	CaUC09G177450.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding