CaUC09G177450 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G177450
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description30S ribosomal protein S10
LocationCiama_Chr09: 36753432 .. 36755420 (+)
RNA-Seq ExpressionCaUC09G177450
SyntenyCaUC09G177450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAAAATTAAAAAAAAAAAAAAAAATACACACGGAAGTTTATTTGGATAACGCTTGCGACTCTACCAGCAAAAAGCTTCCATTCTTTCAGCTTCCGCCATTGATATACAAAGGAACTTCCATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGTTTGTGATGATTTTGTTCGAAATGGAGCAAAATGTTACAATTTCTCTTTGTTTTGTAATGGGTGTAAGAATTTTTGTTCTTGGGTTTGTTTCCTATTTTTTTGGGGCTGTGGCTCAGGTTGTAATACACTGGTGGTGTTCTAAATTTCCATTTCGTTTCCAATTTCATTGCAAGTAGCTAAGGGATTTCCATTTTATTTCTTTAAGGTAATGGATTGGACAATGTTTGTGTTTTTGTCTAATGTTATGTTCATGTTTAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGGTAAATTTTATGTTGTTCAGATAATGTTTTACTCTAGCTTTTCTTGTGGCTTTCTGAAGATATAAAATGGTCTGCAGAGAAACTTCTGAAACCAAAACCTAACTCTGAAATATATATTAGTTTTGATGAGTAAAGAAAGAGTGGCCAGAAAATATACAATGGAATCGTGTAATGAGATTATATCAGTATCATGATTCATGATCCTGCTAAGTTGACTGAGTAAGGTCATGAGTAAATGGAAAATTTAAATTGTCAGTATCAGTTATAGTTGTAGTGTTGCCTTAAAGGCTAATGACATGTTTGGAGTGTTTCTAAAATGGTTAAAATCACTTTTGTCATTTTCACTCCAAAAAAAATGCTTTTAATTATTCAAAATCAGTTTTAATAGTATGAAAATTGTGTTTAAAAGCGTAAAATTAAATATTGATTTGATTTTGAGTGTTTAAAGGTGTGCTTCGAAGTGATTTTAAACATAATAAAAATGATTTTAACCATTTCAAAATCACTCCAAGTATGCACTAAATAATGTGATGAATGTAATGCAGTATTGAAAGTTCCTAATGTAGTGGGATTGAGTGGAATGTTATGGTTCCATACTCCTTTGTATGCTAAAACAACCTCCTCAACTGGGTAGTGCATAGTTCTCCAATTGTACAATGCCTCTGCGGGCTTAATTTATGTGACTTATTGGCCAAGGCCATAGTTACAAAAAGGCCTAGTGAGCAAAGTCCAAAGAGAGACATTAAACCTGGCCACCTCTCAAAATGGATACCAAGATATTCACTTTGTACCTTTATATTGACAAAATGCCAATATGGTCTTCAGCAGGTCTCAGTGTTGTGTTATTTGATTTGTTTGATTATCTGTGGTATGAGGTGTGTCTAGGGACTTATCTTAGCCAATTGGTTTTGTAATTGATATTTGATAGTGTCCATCCTTTTCTTATGTTTGGCCGATTTTAACGAACTAAAGATGTTTTGGTTTCAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

mRNA sequence

GGGAAAATTAAAAAAAAAAAAAAAAATACACACGGAAGTTTATTTGGATAACGCTTGCGACTCTACCAGCAAAAAGCTTCCATTCTTTCAGCTTCCGCCATTGATATACAAAGGAACTTCCATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCAGCGCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008462962.29.4e-10497.09PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo][more]
XP_038899555.13.6e-10396.6030S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S... [more]
XP_004150471.11.1e-10195.1530S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651997.1 30S r... [more]
XP_022940678.12.0e-9892.7230S ribosomal protein S10, chloroplastic-like [Cucurbita moschata][more]
KAG7037344.12.7e-9892.7230S ribosomal protein S10, chloroplastic [Cucurbita argyrosperma subsp. argyrosp... [more]
Match NameE-valueIdentityDescription
Q9M4Y39.9e-6467.9230S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=354... [more]
Q9LK612.7e-6165.0930S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P821629.9e-5662.7930S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=R... [more]
P170099.0e-3366.33Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 ... [more]
B7K8333.4e-3262.0030S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 G... [more]
Match NameE-valueIdentityDescription
A0A1S3CI464.6e-10497.0930S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224... [more]
A0A0A0LEH65.6e-10295.15Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7690... [more]
A0A6J1FPZ59.8e-9992.7230S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1F6U32.9e-9892.7230S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1J2J93.7e-9892.2330S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
Match NameE-valueIdentityDescription
AT3G13120.11.9e-6265.09Ribosomal protein S10p/S20e family protein [more]
AT3G13120.21.9e-6265.09Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 109..122
score: 42.58
coord: 165..179
score: 52.82
coord: 144..159
score: 53.37
IPR001848Ribosomal protein S10TIGRFAMTIGR01049TIGR01049coord: 108..205
e-value: 1.2E-39
score: 132.6
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..206
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 107..206
score: 24.177229
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 111..205
e-value: 3.9E-51
score: 185.9
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 111..205
e-value: 1.9E-32
score: 111.4
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 98..206
e-value: 3.7E-41
score: 141.7
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 109..206
NoneNo IPR availablePANTHERPTHR11700:SF31BNAC05G40270D PROTEINcoord: 1..206
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 133..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G177450.1CaUC09G177450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding