CaUC05G102350.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G102350.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	LOB domain-containing protein
Location	Ciama_Chr05: 33182616 .. 33184237 (+)
Sequence length	615
RNA-Seq Expression	CaUC05G102350.1
Synteny	CaUC05G102350.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGGTAAATTCTCTCTTTTACCCTTTTTCGTTTCATCCATCTTAATTCCATTTTTTTTTCACCACTGATTTTCTATGATATAACCCACTAGTAAGTCACAACGGCATAATTCGAGGACTCTCAGATTCCTTGTGATTTTAAAAAATTATATAAAATTTAGATTTTTTCTTATATATAATTTAATTTGTCCTTTATTTTTTATTTTTTTATTTTTTTTGAAATCAAAAGATTCTAAACTTGGACAACATGCTGGTGATTGGATTTTTTTTTTTTTTTTTTCTTTTTCAATTTTCAATTAGAGTATAATGTCTTAACGATTATGCATATAACTATAAGATTTTAAAAACGTAAAATTTTGGAGAGGTTGGATTTTATTTTAGTTTATGATTACTACTACTATTATTTTTAAGCAGGTTGAGGTTAAACAACTTCATATTGTTGATATATGGAAAACAAATTTCTTTTGTAAAATAAATTTAATTTTCTTTGATTTATCCTATTATAATTTTTTGAAACTCAATTAACTTAAAAATTTAAATCTATAAATTATAGTAAATTTAATTATATTAACCATTTAACACTCTCTCATGTAATGGATTGAAAATTTGTAGAAGATTCAATAAGTAGAAACTAATATTGGTTTTGCTTTGATGCTATCTTAAACTCAAAAGTTTAAGATGATAGGTTACGGTAAATTCAATATATTAACACTCTAACATTCAATGTTACTTTTTTTTCCAAACCAACAAAAAAAATTTTGAAAATTTGAACCTCTCATCTTGAAGATTGGTACTACGTGACGAGAAGTGTTTCATTCTTTAATTACTATTGATGAATAGTTGGTAGGATTATTTATAGTAACTCGTTTGTTTAAGATTTGGGATTAAATCATGATTTAGCTAGAATGAGAAATAAAAGAAAAGTGTGCGATGTATTTTATTTGAGGTGTGGTGTCATATGGTTGATGACATTGAAGTTGTCTTCTTGTTGTTGTGTGTGTTTTTTTAAAGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA

mRNA sequence

ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA

Coding sequence (CDS)

ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA

Protein sequence

MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ

Homology

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BLAST of CaUC05G102350.1 vs. NCBI nr
Match: XP_004135401.1 (LOB domain-containing protein 40 [Cucumis sativus] >KGN52610.2 hypothetical protein Csa_008453 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 5.7e-101
Identity = 184/205 (89.76%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCRILRKGCSDDCIIRPCLQWIPS+DSQANATIFLAKFYGRAGLFNLITAAAQH
Sbjct: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAQH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNA 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEP+ PPSNN 
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDTPPSNNG 120

Query: 121 NLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPG 180
           NLSLKCCDIRHVCN+PNLAASG+LLKVK RSRFKKPDHRTKPKP    +LGIG S +E G
Sbjct: 121 NLSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKPKPGPDHDLGIGSSFDEAG 180

Query: 181 RVLRNGSRFEKG-DVELELTLKSAQ 205
           R + NGSRFEK  DVELELTLKSAQ
Sbjct: 181 RDVSNGSRFEKADDVELELTLKSAQ 205

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BLAST of CaUC05G102350.1 vs. NCBI nr
Match: KAA0034556.1 (LOB domain-containing protein 40-like [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 2.6e-98
Identity = 182/214 (85.05%), Postives = 189/214 (88.32%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           M+MSCNGCRILRKGCSDDCIIRPCLQWIPS+DSQANATIFLAKFYGRAGLFNLITAAA H
Sbjct: 1   MKMSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAHH 60

Query: 61  LRP----------AIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNV 120
           LRP          AIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNV
Sbjct: 61  LRPVKLSSCCVFLAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNV 120

Query: 121 EPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPEL 180
           EP+ PPSNN N SLKCCDIRHVCN+PNLAASG+LLKVK RSRFKKPDHRTK KP    EL
Sbjct: 121 EPDTPPSNNGNFSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKSKPGPDHEL 180

Query: 181 GIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ 205
           GIG S +E GR LR+GSRFEK DVELELTLKSAQ
Sbjct: 181 GIGSSSDESGRDLRSGSRFEKADVELELTLKSAQ 214

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BLAST of CaUC05G102350.1 vs. NCBI nr
Match: XP_038893147.1 (LOB domain-containing protein 40-like [Benincasa hispida])

HSP 1 Score: 364.0 bits (933), Expect = 8.4e-97
Identity = 180/204 (88.24%), Postives = 187/204 (91.67%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLI+AAAQ 
Sbjct: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLISAAAQP 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNA 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLL SGDWERCQAAVDAVLNGSMNVEP+ PPSNN 
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLYSGDWERCQAAVDAVLNGSMNVEPDVPPSNNG 120

Query: 121 NLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPG 180
           NLSLKCCDIRHVCN+PNLAASGELLKVKARSRFKKPD+RTK K    P+LGIG S E   
Sbjct: 121 NLSLKCCDIRHVCNEPNLAASGELLKVKARSRFKKPDNRTKLKIGPAPDLGIGSSFEGSS 180

Query: 181 RVLRNGSRFEKGDVELELTLKSAQ 205
           RVL NG+R EK +VELELTLKSAQ
Sbjct: 181 RVLSNGNRVEKVNVELELTLKSAQ 204

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BLAST of CaUC05G102350.1 vs. NCBI nr
Match: XP_022945568.1 (LOB domain-containing protein 42-like [Cucurbita moschata])

HSP 1 Score: 328.2 bits (840), Expect = 5.1e-86
Identity = 170/222 (76.58%), Postives = 179/222 (80.63%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA+H
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNA 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEP+AP S N 
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLS-NT 120

Query: 121 NLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVP--ELGIGPSVE- 180
           NLSLKCCDIRHVCND NLA  GEL K K R+RFKKPDHR K KP+  P  ELG G +VE 
Sbjct: 121 NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEV 180

Query: 181 ---------------EPGRVLRNGSRFEKGDVELELTLKSAQ 205
                          +PG VLRNG   E+ DVELELTL SAQ
Sbjct: 181 IEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 221

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BLAST of CaUC05G102350.1 vs. NCBI nr
Match: XP_023542000.1 (LOB domain-containing protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.5 bits (833), Expect = 3.3e-85
Identity = 168/220 (76.36%), Postives = 177/220 (80.45%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA+H
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNA 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEP+AP S N 
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLS-NT 120

Query: 121 NLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVE--- 180
           NLSLKCCDIRHVCND NLA  GEL K K R+RFKKPD+RTK KP    ELG G +VE   
Sbjct: 121 NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGNELGSGSNVEVIE 180

Query: 181 -------------EPGRVLRNGSRFEKGDVELELTLKSAQ 205
                        +PG VLRNG   E+ DV LELTL SAQ
Sbjct: 181 IDRMADDLMTNRRKPGWVLRNGMWVEEEDVALELTLNSAQ 219

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BLAST of CaUC05G102350.1 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-49
Identity = 103/161 (63.98%), Postives = 117/161 (72.67%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCR+LRKGCS++C IRPCLQWI SA+SQANAT+FLAKFYGRAGL NL+     H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGS--------MNVEP 120
           LRPAIF+SLLYEACGR+VNP+YGSVGLL SG+W  CQAAV+AV+ GS          V  
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 121 EAPPSNNANLSLKCCDIRHVCN-DPNLAASGELLKVKARSR 153
           +APP NN     K CDIRHV + D N         VK RSR
Sbjct: 121 QAPPFNN-----KLCDIRHVSSRDEN---------VKRRSR 147

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BLAST of CaUC05G102350.1 vs. ExPASy Swiss-Prot
Match: Q9CA30 (LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-49
Identity = 105/175 (60.00%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MR+SCNGCR+LRKGC+ DC IRPCLQWI SADSQANAT+FLAKFYGRAGL NLI +   H
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNG---SMNVEPEAPPS 120
           LRPAIF+SLLYEACGR+VNPV GSVGL+ SG+W +CQAAVDAVLNG   +    P A  S
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 121 NNANLSLKCCDIRHVCNDPNLAA-SGELLKVKARSRFKKPDHRTKPKPESVPELG 172
           +      +  DIRHV  DP     S E L  +  +  K      + K ESV +LG
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNAN-KSKTQTGRFKRESVNQLG 174

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BLAST of CaUC05G102350.1 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.4e-46
Identity = 90/142 (63.38%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCR+LRKGCS+DC IRPCL WI S ++QANAT+FLAKFYGRAGL NLI A   H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSN-N 120
           LRP IF+SLL+EACGR+VNP+YGSVGLL SG+W+ CQ AV+AV+ G    E     +   
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 ANLSLKCCDIRHVCNDPNLAAS 142
               LK  DIRH+  D N AA+
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAA 142

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BLAST of CaUC05G102350.1 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.2e-38
Identity = 70/112 (62.50%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLR 62
           MSCNGCR+LRKGCS++CI+RPC+QWI +AD+Q +AT+F+AKF+GRAGL + I+A     R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVL-NGSMNVEPE 114
           PA+F+SLLYEACGR VNPV G++G+L +G+W  CQAAV+ VL  GS+   PE
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPE 112

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BLAST of CaUC05G102350.1 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 70/112 (62.50%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLR 62
           MSCNGCR+LRKGCS++CI+RPC+QWI S ++Q +AT+F+AKF+GRAGL + I+A  +   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVL-NGSMNVEPE 114
           PA+F+SLLYEACGR VNPV G+VGLL +G+W  CQAAV+ VL  GS+   PE
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPE 112

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BLAST of CaUC05G102350.1 vs. ExPASy TrEMBL
Match: A0A0A0KUI0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609680 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.0e-100
Identity = 182/203 (89.66%), Postives = 189/203 (93.10%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLR 62
           MSCNGCRILRKGCSDDCIIRPCLQWIPS+DSQANATIFLAKFYGRAGLFNLITAAAQHLR
Sbjct: 1   MSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAQHLR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANL 122
           PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEP+ PPSNN NL
Sbjct: 61  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDTPPSNNGNL 120

Query: 123 SLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPGRV 182
           SLKCCDIRHVCN+PNLAASG+LLKVK RSRFKKPDHRTKPKP    +LGIG S +E GR 
Sbjct: 121 SLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKPKPGPDHDLGIGSSFDEAGRD 180

Query: 183 LRNGSRFEKG-DVELELTLKSAQ 205
           + NGSRFEK  DVELELTLKSAQ
Sbjct: 181 VSNGSRFEKADDVELELTLKSAQ 203

[Close]

BLAST of CaUC05G102350.1 vs. ExPASy TrEMBL
Match: A0A5A7SXG6 (LOB domain-containing protein 40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005720 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 182/214 (85.05%), Postives = 189/214 (88.32%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           M+MSCNGCRILRKGCSDDCIIRPCLQWIPS+DSQANATIFLAKFYGRAGLFNLITAAA H
Sbjct: 1   MKMSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAHH 60

Query: 61  LRP----------AIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNV 120
           LRP          AIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNV
Sbjct: 61  LRPVKLSSCCVFLAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNV 120

Query: 121 EPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPEL 180
           EP+ PPSNN N SLKCCDIRHVCN+PNLAASG+LLKVK RSRFKKPDHRTK KP    EL
Sbjct: 121 EPDTPPSNNGNFSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKSKPGPDHEL 180

Query: 181 GIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ 205
           GIG S +E GR LR+GSRFEK DVELELTLKSAQ
Sbjct: 181 GIGSSSDESGRDLRSGSRFEKADVELELTLKSAQ 214

[Close]

BLAST of CaUC05G102350.1 vs. ExPASy TrEMBL
Match: A0A6J1G195 (LOB domain-containing protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111449763 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.5e-86
Identity = 170/222 (76.58%), Postives = 179/222 (80.63%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA+H
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNA 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEP+AP S N 
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLS-NT 120

Query: 121 NLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVP--ELGIGPSVE- 180
           NLSLKCCDIRHVCND NLA  GEL K K R+RFKKPDHR K KP+  P  ELG G +VE 
Sbjct: 121 NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEV 180

Query: 181 ---------------EPGRVLRNGSRFEKGDVELELTLKSAQ 205
                          +PG VLRNG   E+ DVELELTL SAQ
Sbjct: 181 IEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 221

[Close]

BLAST of CaUC05G102350.1 vs. ExPASy TrEMBL
Match: A0A6J1HWX5 (LOB domain-containing protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111467594 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 168/220 (76.36%), Postives = 177/220 (80.45%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA+H
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNA 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEP+AP S N 
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLS-NT 120

Query: 121 NLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVE--- 180
           NLSLKCCDIRHVCND NLA  GEL K K R+RFKKPD+RTK KP    ELG G +VE   
Sbjct: 121 NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKSKPGPGRELGSGSNVEVIE 180

Query: 181 -------------EPGRVLRNGSRFEKGDVELELTLKSAQ 205
                        +PG VLRNG   E+  VELELTL SAQ
Sbjct: 181 IDRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 219

[Close]

BLAST of CaUC05G102350.1 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.8e-73
Identity = 150/210 (71.43%), Postives = 161/210 (76.67%), Query Frame = 0


Query: 15  CSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEAC 74
           CSD+C+IRPCL+WI S DSQANATIFLAKFYGRAGLFNLITAA+QHLRPAIFKSLLYEAC
Sbjct: 86  CSDECVIRPCLEWISSPDSQANATIFLAKFYGRAGLFNLITAASQHLRPAIFKSLLYEAC 145

Query: 75  GRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCN 134
           GRMVNPVYGSVGLLCSGDW+RCQAAVDAVL G+MNVE  APPS   N ++ CCDIRHVC 
Sbjct: 146 GRMVNPVYGSVGLLCSGDWDRCQAAVDAVLTGTMNVETNAPPS---NANVLCCDIRHVCT 205

Query: 135 DPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEE---------------- 194
           D NLAA GE  KVKARSRFKKPDHRTKPK      LG G +  E                
Sbjct: 206 DTNLAAPGEPRKVKARSRFKKPDHRTKPKSGPAEILGSGSNWAESGANRQIEMVDALTVN 265

Query: 195 ---PGRVLRNGSRFEKGD-VELELTLKSAQ 205
              P RVLR+GSR E+ D VELELTL SAQ
Sbjct: 266 RGKPNRVLRHGSRSERVDNVELELTLNSAQ 292

[Close]

BLAST of CaUC05G102350.1 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 197.6 bits (501), Expect = 9.7e-51
Identity = 103/161 (63.98%), Postives = 117/161 (72.67%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCR+LRKGCS++C IRPCLQWI SA+SQANAT+FLAKFYGRAGL NL+     H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGS--------MNVEP 120
           LRPAIF+SLLYEACGR+VNP+YGSVGLL SG+W  CQAAV+AV+ GS          V  
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 121 EAPPSNNANLSLKCCDIRHVCN-DPNLAASGELLKVKARSR 153
           +APP NN     K CDIRHV + D N         VK RSR
Sbjct: 121 QAPPFNN-----KLCDIRHVSSRDEN---------VKRRSR 147

[Close]

BLAST of CaUC05G102350.1 vs. TAIR 10
Match: AT1G68510.1 (LOB domain-containing protein 42 )

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-50
Identity = 105/175 (60.00%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MR+SCNGCR+LRKGC+ DC IRPCLQWI SADSQANAT+FLAKFYGRAGL NLI +   H
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNG---SMNVEPEAPPS 120
           LRPAIF+SLLYEACGR+VNPV GSVGL+ SG+W +CQAAVDAVLNG   +    P A  S
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 121 NNANLSLKCCDIRHVCNDPNLAA-SGELLKVKARSRFKKPDHRTKPKPESVPELG 172
           +      +  DIRHV  DP     S E L  +  +  K      + K ESV +LG
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNAN-KSKTQTGRFKRESVNQLG 174

[Close]

BLAST of CaUC05G102350.1 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-47
Identity = 90/142 (63.38%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQH 60
           MRMSCNGCR+LRKGCS+DC IRPCL WI S ++QANAT+FLAKFYGRAGL NLI A   H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSN-N 120
           LRP IF+SLL+EACGR+VNP+YGSVGLL SG+W+ CQ AV+AV+ G    E     +   
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 ANLSLKCCDIRHVCNDPNLAAS 142
               LK  DIRH+  D N AA+
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAA 142

[Close]

BLAST of CaUC05G102350.1 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 158.3 bits (399), Expect = 6.6e-39
Identity = 70/112 (62.50%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLR 62
           MSCNGCR+LRKGCS++CI+RPC+QWI +AD+Q +AT+F+AKF+GRAGL + I+A     R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVL-NGSMNVEPE 114
           PA+F+SLLYEACGR VNPV G++G+L +G+W  CQAAV+ VL  GS+   PE
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPE 112

[Close]

BLAST of CaUC05G102350.1 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 154.8 bits (390), Expect = 7.2e-38
Identity = 70/112 (62.50%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLR 62
           MSCNGCR+LRKGCS++CI+RPC+QWI S ++Q +AT+F+AKF+GRAGL + I+A  +   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVL-NGSMNVEPE 114
           PA+F+SLLYEACGR VNPV G+VGLL +G+W  CQAAV+ VL  GS+   PE
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPE 112

The following BLAST results are available for this feature:

BLAST of CaUC05G102350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135401.1	5.7e-101	89.76	LOB domain-containing protein 40 [Cucumis sativus] >KGN52610.2 hypothetical prot...	[more]
KAA0034556.1	2.6e-98	85.05	LOB domain-containing protein 40-like [Cucumis melo var. makuwa]	[more]
XP_038893147.1	8.4e-97	88.24	LOB domain-containing protein 40-like [Benincasa hispida]	[more]
XP_022945568.1	5.1e-86	76.58	LOB domain-containing protein 42-like [Cucurbita moschata]	[more]
XP_023542000.1	3.3e-85	76.36	LOB domain-containing protein 42-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC05G102350.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZW96	1.4e-49	63.98	LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S...	[more]
Q9CA30	2.3e-49	60.00	LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 S...	[more]
Q9M886	2.4e-46	63.38	LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S...	[more]
Q9FN11	9.2e-38	62.50	LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S...	[more]
Q9SN23	1.0e-36	62.50	LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S...	[more]

BLAST of CaUC05G102350.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUI0	4.0e-100	89.66	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609680 PE=3 SV...	[more]
A0A5A7SXG6	1.3e-98	85.05	LOB domain-containing protein 40-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1G195	2.5e-86	76.58	LOB domain-containing protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111449...	[more]
A0A6J1HWX5	2.1e-85	76.36	LOB domain-containing protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC11146759...	[more]
A0A6J1DAV9	1.8e-73	71.43	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of CaUC05G102350.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67100.1	9.7e-51	63.98	LOB domain-containing protein 40	[more]
AT1G68510.1	1.7e-50	60.00	LOB domain-containing protein 42	[more]
AT3G02550.1	1.7e-47	63.38	LOB domain-containing protein 41	[more]
AT5G67420.1	6.6e-39	62.50	LOB domain-containing protein 37	[more]
AT3G49940.1	7.2e-38	62.50	LOB domain-containing protein 38	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 4..102 e-value: 5.8E-23 score: 81.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 3..109 score: 15.425116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..186
None	No IPR available	PANTHER	PTHR31304:SF48	LOB DOMAIN-CONTAINING PROTEIN 41-LIKE	coord: 1..165
None	No IPR available	PANTHER	PTHR31304	LOB DOMAIN-CONTAINING PROTEIN 38	coord: 1..165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC05G102350	CaUC05G102350	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC05G102350.1-exon	CaUC05G102350.1-exon-Ciama_Chr05:33182616..33182805	exon
CaUC05G102350.1-exon	CaUC05G102350.1-exon-Ciama_Chr05:33183813..33184237	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC05G102350.1-cds	CaUC05G102350.1-cds-Ciama_Chr05:33182616..33182805	CDS
CaUC05G102350.1-cds	CaUC05G102350.1-cds-Ciama_Chr05:33183813..33184237	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC05G102350.1	CaUC05G102350.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane