CaUC05G095960.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G095960.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr05: 27073384 .. 27073617 (-)
Sequence length234
RNA-Seq ExpressionCaUC05G095960.1
SyntenyCaUC05G095960.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGAGAAAGAGATAGACAGATTCAGAGGAAAATACGTAGATTCAAAAAACGTAGGCTTAATACCTGATCGTGTTGTCGGTTCTCAGGCGGATCCAGTGCGGGATCGGCCTATTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAAAGTCTTGTGAGACGGCTGTGGATTGGAAAGGAAGAGAAAATCGAATTACAGACTCGCAGAAGTTCAAACATCCACTAA

mRNA sequence

ATGCGAGAGAAAGAGATAGACAGATTCAGAGGAAAATACGTAGATTCAAAAAACGTAGGCTTAATACCTGATCGTGTTGTCGGTTCTCAGGCGGATCCAGTGCGGGATCGGCCTATTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAAAGTCTTGTGAGACGGCTGTGGATTGGAAAGGAAGAGAAAATCGAATTACAGACTCGCAGAAGTTCAAACATCCACTAA

Coding sequence (CDS)

ATGCGAGAGAAAGAGATAGACAGATTCAGAGGAAAATACGTAGATTCAAAAAACGTAGGCTTAATACCTGATCGTGTTGTCGGTTCTCAGGCGGATCCAGTGCGGGATCGGCCTATTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAAAGTCTTGTGAGACGGCTGTGGATTGGAAAGGAAGAGAAAATCGAATTACAGACTCGCAGAAGTTCAAACATCCACTAA

Protein sequence

MREKEIDRFRGKYVDSKNVGLIPDRVVGSQADPVRDRPILPHLLRELLLDSESLVRRLWIGKEEKIELQTRRSSNIH
Homology
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BLAST of CaUC05G095960.1 vs. NCBI nr
Match: KAF7806498.1 (60S ribosomal protein L39 [Senna tora])

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 22  IPDRVVGSQADPVRDRPILPHLLRELLLDSESLVRRLWIGKEEKIELQ 70
           +PD V+G   +PVR RP+LPHLLRELLLD E LV RL I KE K   Q
Sbjct: 70  VPDGVIGPHPNPVRYRPVLPHLLRELLLDPEGLVGRLHI-KESKSRTQ 116

The following BLAST results are available for this feature:
BLAST of CaUC05G095960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7806498.11.4e-0462.5060S ribosomal protein L39 [Senna tora][more]
BLAST of CaUC05G095960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC05G095960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC05G095960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC05G095960CaUC05G095960gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC05G095960.1-exonCaUC05G095960.1-exon-Ciama_Chr05:27073384..27073617exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC05G095960.1-cdsCaUC05G095960.1-cds-Ciama_Chr05:27073384..27073617CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC05G095960.1CaUC05G095960.1-proteinpolypeptide