CaUC05G095960 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G095960
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr05: 27073384 .. 27073617 (-)
RNA-Seq ExpressionCaUC05G095960
SyntenyCaUC05G095960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGAGAAAGAGATAGACAGATTCAGAGGAAAATACGTAGATTCAAAAAACGTAGGCTTAATACCTGATCGTGTTGTCGGTTCTCAGGCGGATCCAGTGCGGGATCGGCCTATTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAAAGTCTTGTGAGACGGCTGTGGATTGGAAAGGAAGAGAAAATCGAATTACAGACTCGCAGAAGTTCAAACATCCACTAA

mRNA sequence

ATGCGAGAGAAAGAGATAGACAGATTCAGAGGAAAATACGTAGATTCAAAAAACGTAGGCTTAATACCTGATCGTGTTGTCGGTTCTCAGGCGGATCCAGTGCGGGATCGGCCTATTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAAAGTCTTGTGAGACGGCTGTGGATTGGAAAGGAAGAGAAAATCGAATTACAGACTCGCAGAAGTTCAAACATCCACTAA

Coding sequence (CDS)

ATGCGAGAGAAAGAGATAGACAGATTCAGAGGAAAATACGTAGATTCAAAAAACGTAGGCTTAATACCTGATCGTGTTGTCGGTTCTCAGGCGGATCCAGTGCGGGATCGGCCTATTCTGCCTCATCTTCTTCGCGAGCTTCTTCTTGATTCTGAAAGTCTTGTGAGACGGCTGTGGATTGGAAAGGAAGAGAAAATCGAATTACAGACTCGCAGAAGTTCAAACATCCACTAA

Protein sequence

MREKEIDRFRGKYVDSKNVGLIPDRVVGSQADPVRDRPILPHLLRELLLDSESLVRRLWIGKEEKIELQTRRSSNIH
Homology
BLAST of CaUC05G095960 vs. NCBI nr
Match: KAF7806498.1 (60S ribosomal protein L39 [Senna tora])

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 22  IPDRVVGSQADPVRDRPILPHLLRELLLDSESLVRRLWIGKEEKIELQ 70
           +PD V+G   +PVR RP+LPHLLRELLLD E LV RL I KE K   Q
Sbjct: 70  VPDGVIGPHPNPVRYRPVLPHLLRELLLDPEGLVGRLHI-KESKSRTQ 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7806498.11.4e-0462.5060S ribosomal protein L39 [Senna tora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G095960.1CaUC05G095960.1mRNA