CaUC03G050390.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G050390.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr03: 424229 .. 426310 (-)
Sequence length882
RNA-Seq ExpressionCaUC03G050390.1
SyntenyCaUC03G050390.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTATATGTATATATAAAAGTGGAAATTTGGAAGTTTGAACCTTTCACCTTGAGAGATGAGGTGCCAATTACTATTGGTTAAATCATAACTTTGTCCATGAACTTTAAAGATGATCATGGAAACATAGCATAGCTCAAGCTGAAGTGACGTATTTGTAACTAGGTTAATGTTCAAATCCCCATTCATAAATCATATCCATTCTAAAAGAATTTAGAAACATAATCTAAAGGTAAAATGTAACATTTTAAAATTTGAGATGGAAGAAAAACTATATCATAATTTAAAATTCTAGTTTATATTTATAACACCATACTAGAAATCCAACAAAAATGGAATCTGAGGAGGCCAATTTAGATAAGTCATTTTGTGTCACTCTAACCAGTAATTTTAGAAGCATTCAAACGCCCAGTACTATCTTCTAATCCACCATTATCAATCATTCAAGAAAAAGCTTCAAAGCTTTGAAATTTAATCATAATTCAGAATGGCCCCTACACATAACAGTTGCAATTGCAGTTATACCCAGATCAAACCAATTACAACTTGGCCAAAAATTTCTTTGTCCACTTCTAAGCCAAAAGATTTATGAAACATGGCATTTGTATAGATATACAAGCAATATTTAACATGTGACTTACCCTTTTACCTCCTTCCACTGCCTGAGCCGCCGCCGCCGCCGCCGCCTTCAAACAGCTCGGTGATTCGAGCCTCCATATCCTCCGCCGTGTACTTCAAATACCGGTCTGTACGCTTTGCCAACTCCGGCAAACTCTGGTATCTGCCGATGAACTTTTGATATGCTGGCAACAGAATTTTGGCAACTGAGATTCTTGCTTCTTCTCTAAGCTGATGCTCAAATATCACCCATGTGGATTGGGTTTGGCAGATTTCTTCAAATTGCATATTGAATGATTGGAGCTTCTCCTTCATCACAGCCGGAGCTATAGTGCCACTGTCCATTTTCAATGCTCCGACCACCTTGCTCCATGAGCTTTTCAGGTAGTTTCCGAGGTATTGCCGGTTTTTAACCGAGTGTTTTCGAATCCAATCCTCGCCTAAAACTGACCCTAATTCACTGTCTTTCACTTTCTGAACAATGTATCGCCCATTGTTCATCAGAAACACAGAGCTTAAGGAAAGATCCTTGTATATCTTCGATTTCGCCTCTAAATTGCTCTCTAAAAGCTCCATTATCCAGTCCATTTGAACTGATAAGGAAGACGATGCTGCTGCTCTGTCCTCGAGCTTAGTGTAATCCTTAGAGGGAAGAGCAGCTTCTTCGAAAACTTGCTCTAAAGTCTGCCGAGATTTACAGGCTGCTCTAAGGTAATTCATCACATATCGAGTGATTGGATGAAGGCCGCCCCCCGGGACCGGAGTTTTAGCCGGATCACGGCGGATCAAATTCTCAAGCTCCATGAAGATCCCTTTGATTGTTCCGCCTAACCTTTTCCAGATTGTAATTGCTTCATTTCTAAGCAATAAGCAGTACTGATCTGAAAATACTGAATCGAATTCTGGCATCAAGTCTCTCAAGGTCTCGAACATATCGAGGATTTTGAAAAGTCGTTCCGGCGCGCGGGAGCCAATTGCTACCGCATCTGCAAAATTCAATAGCTGGATAGTCGATCCACGGCAGACCTCCATGAAAGAAAGATCGGCGGTGGAGGAGAGGCCGACGAAGACGCGTTCGCAGAGGCGTCGTTCACTTGGGAAGAGAATTCGAAGGGAGACAGTAATCGCTTTCATCCAGCGTTCAATCTCCTCTTCAAGGTCATGCCATTGCATCTTTTGAACTTCATCGATGCTCAGCTTCTGTAACCCCAACCTAGAAAGACTCTCCTCCAAAAACTCCCTCCTGCAGCTACTGTAAGCGTGTGAACACTCTTTCTCGAACCCAGCCGCTACCATACGCTTCGCTATTTCATGAAGATCGCTGATAGTCCCCGACGGAAGTGCATCGATAACGATGTTGTAGTCCGTCACCGGCTGCGCCACAGGGATCTGGAGAGCATCGCCATCGCCAAGAATTCCTTCCTCATCTTCCTCAGAATCGAAGCAGAAATCCCCCGTTGA

mRNA sequence

ATGTATATATACAAGCAATATTTAACATGTGACTTACCCTTTTACCTCCTTCCACTGCCTGAGCCGCCGCCGCCGCCGCCGCCTTCAAACAGCTCGGTGATTCGAGCCTCCATATCCTCCGCCGTGTACTTCAAATACCGGTCTATTTCTTCAAATTGCATATTGAATGATTGGAGCTTCTCCTTCATCACAGCCGGAGCTATAGTGCCACTGTCCATTTTCAATGCTCCGACCACCTTGCTCCATGAGCTTTTCAGAGCAGCTTCTTCGAAAACTTGCTCTAAAGTCTGCCGAGATTTACAGGCTGCTCTAAGGCCGCCCCCCGGGACCGGAGTTTTAGCCGGATCACGGCGGATCAAATTCTCAAGCTCCATGAAGATCCCTTTGATTGTTCCGCCTAACCTTTTCCAGATTGTCTCGAACATATCGAGGATTTTGAAAAGTCGTTCCGGCGCGCGGGAGCCAATTGCTACCGCATCTGCAAAATTCAATAGCTGGATAGTCGATCCACGGCAGACCTCCATGAAAGAAAGATCGGCGGTGGAGGAGAGGCCGACGAAGACGCGTTCGCAGAGGCGTCGTTCACTTGGGAAGAGAATTCGAAGGGAGACAGTAATCGCTTTCATCCAGCGTTCAATCTCCTCTTCAAGCTTCTGTAACCCCAACCTAGAAAGACTCTCCTCCAAAAACTCCCTCCTGCAGCTACTCCGCTACCATACGCTTCGCTATTTCATGAAGATCGCTGATAGTCCCCGACGGAAGTGCATCGATAACGATGTTGTAGTCCGTCACCGGCTGCGCCACAGGGATCTGGAGAGCATCGCCATCGCCAAGAATTCCTTCCTCATCTTCCTCAGAATCGAAGCAGAAATCCCCCGTTGA

Coding sequence (CDS)

ATGTATATATACAAGCAATATTTAACATGTGACTTACCCTTTTACCTCCTTCCACTGCCTGAGCCGCCGCCGCCGCCGCCGCCTTCAAACAGCTCGGTGATTCGAGCCTCCATATCCTCCGCCGTGTACTTCAAATACCGGTCTATTTCTTCAAATTGCATATTGAATGATTGGAGCTTCTCCTTCATCACAGCCGGAGCTATAGTGCCACTGTCCATTTTCAATGCTCCGACCACCTTGCTCCATGAGCTTTTCAGAGCAGCTTCTTCGAAAACTTGCTCTAAAGTCTGCCGAGATTTACAGGCTGCTCTAAGGCCGCCCCCCGGGACCGGAGTTTTAGCCGGATCACGGCGGATCAAATTCTCAAGCTCCATGAAGATCCCTTTGATTGTTCCGCCTAACCTTTTCCAGATTGTCTCGAACATATCGAGGATTTTGAAAAGTCGTTCCGGCGCGCGGGAGCCAATTGCTACCGCATCTGCAAAATTCAATAGCTGGATAGTCGATCCACGGCAGACCTCCATGAAAGAAAGATCGGCGGTGGAGGAGAGGCCGACGAAGACGCGTTCGCAGAGGCGTCGTTCACTTGGGAAGAGAATTCGAAGGGAGACAGTAATCGCTTTCATCCAGCGTTCAATCTCCTCTTCAAGCTTCTGTAACCCCAACCTAGAAAGACTCTCCTCCAAAAACTCCCTCCTGCAGCTACTCCGCTACCATACGCTTCGCTATTTCATGAAGATCGCTGATAGTCCCCGACGGAAGTGCATCGATAACGATGTTGTAGTCCGTCACCGGCTGCGCCACAGGGATCTGGAGAGCATCGCCATCGCCAAGAATTCCTTCCTCATCTTCCTCAGAATCGAAGCAGAAATCCCCCGTTGA

Protein sequence

MYIYKQYLTCDLPFYLLPLPEPPPPPPPSNSSVIRASISSAVYFKYRSISSNCILNDWSFSFITAGAIVPLSIFNAPTTLLHELFRAASSKTCSKVCRDLQAALRPPPGTGVLAGSRRIKFSSSMKIPLIVPPNLFQIVSNISRILKSRSGAREPIATASAKFNSWIVDPRQTSMKERSAVEERPTKTRSQRRRSLGKRIRRETVIAFIQRSISSSSFCNPNLERLSSKNSLLQLLRYHTLRYFMKIADSPRRKCIDNDVVVRHRLRHRDLESIAIAKNSFLIFLRIEAEIPR
Homology
[Close]
BLAST of CaUC03G050390.1 vs. NCBI nr
Match: CAA7026366.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-05
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 175 MKERSAVEE--RPTKTRSQRRRSLGKRIRRETVIAFIQRSISSSSFCNP----------- 234
           MKERS  EE  R  KTRSQRRRSLGK+ R     A IQRSISSSS C+            
Sbjct: 1   MKERSVTEETGRSEKTRSQRRRSLGKKTRNTIAAALIQRSISSSSSCHGVSCTSSIVSPL 60

Query: 235 --NLERLSSKNSLLQLL 237
             NL++LSS+NSL +LL
Sbjct: 61  RCNLDKLSSRNSLRRLL 77

[Close]
BLAST of CaUC03G050390.1 vs. NCBI nr
Match: KAG0467983.1 (hypothetical protein HPP92_017311 [Vanilla planifolia])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-04
Identity = 41/78 (52.56%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 170 PRQTSMKERSAVEERPTKTRSQRRRSLGKRIRRETVIAFIQRSISSSSFCN--------- 229
           PRQ S KERSA+ ERP K R QRRRSLGKRIR  T  AF  R ISSSS  +         
Sbjct: 15  PRQASAKERSAMVERPEKMRWQRRRSLGKRIRNATFTAFTHRQISSSSSAHGVAWISSAA 74

Query: 230 ------PNLERLSSKNSL 233
                 P+ E LSS  SL
Sbjct: 75  AARWRIPSREMLSSMKSL 92

[Close]
BLAST of CaUC03G050390.1 vs. ExPASy TrEMBL
Match: A0A6D2IMJ7 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS13601 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 175 MKERSAVEE--RPTKTRSQRRRSLGKRIRRETVIAFIQRSISSSSFCNP----------- 234
           MKERS  EE  R  KTRSQRRRSLGK+ R     A IQRSISSSS C+            
Sbjct: 1   MKERSVTEETGRSEKTRSQRRRSLGKKTRNTIAAALIQRSISSSSSCHGVSCTSSIVSPL 60

Query: 235 --NLERLSSKNSLLQLL 237
             NL++LSS+NSL +LL
Sbjct: 61  RCNLDKLSSRNSLRRLL 77

The following BLAST results are available for this feature:
BLAST of CaUC03G050390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA7026366.18.3e-0554.55unnamed protein product [Microthlaspi erraticum][more]
KAG0467983.12.4e-0452.56hypothetical protein HPP92_017311 [Vanilla planifolia][more]
BLAST of CaUC03G050390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC03G050390.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6D2IMJ74.0e-0554.55Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS13601 ... [more]
BLAST of CaUC03G050390.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..196

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC03G050390CaUC03G050390gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC03G050390.1-exonCaUC03G050390.1-exon-Ciama_Chr03:424229..424403exon
CaUC03G050390.1-exonCaUC03G050390.1-exon-Ciama_Chr03:424436..424492exon
CaUC03G050390.1-exonCaUC03G050390.1-exon-Ciama_Chr03:424532..424767exon
CaUC03G050390.1-exonCaUC03G050390.1-exon-Ciama_Chr03:424846..424945exon
CaUC03G050390.1-exonCaUC03G050390.1-exon-Ciama_Chr03:424979..425035exon
CaUC03G050390.1-exonCaUC03G050390.1-exon-Ciama_Chr03:425306..425418exon
CaUC03G050390.1-exonCaUC03G050390.1-exon-Ciama_Chr03:425560..425697exon
CaUC03G050390.1-exonCaUC03G050390.1-exon-Ciama_Chr03:426305..426310exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC03G050390.1-cdsCaUC03G050390.1-cds-Ciama_Chr03:424229..424403CDS
CaUC03G050390.1-cdsCaUC03G050390.1-cds-Ciama_Chr03:424436..424492CDS
CaUC03G050390.1-cdsCaUC03G050390.1-cds-Ciama_Chr03:424532..424767CDS
CaUC03G050390.1-cdsCaUC03G050390.1-cds-Ciama_Chr03:424846..424945CDS
CaUC03G050390.1-cdsCaUC03G050390.1-cds-Ciama_Chr03:424979..425035CDS
CaUC03G050390.1-cdsCaUC03G050390.1-cds-Ciama_Chr03:425306..425418CDS
CaUC03G050390.1-cdsCaUC03G050390.1-cds-Ciama_Chr03:425560..425697CDS
CaUC03G050390.1-cdsCaUC03G050390.1-cds-Ciama_Chr03:426305..426310CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC03G050390.1CaUC03G050390.1-proteinpolypeptide