CaUC03G050390 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G050390
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr03: 424229 .. 426310 (-)
RNA-Seq Expression	CaUC03G050390
Synteny	CaUC03G050390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTATATGTATATATAAAAGTGGAAATTTGGAAGTTTGAACCTTTCACCTTGAGAGATGAGGTGCCAATTACTATTGGTTAAATCATAACTTTGTCCATGAACTTTAAAGATGATCATGGAAACATAGCATAGCTCAAGCTGAAGTGACGTATTTGTAACTAGGTTAATGTTCAAATCCCCATTCATAAATCATATCCATTCTAAAAGAATTTAGAAACATAATCTAAAGGTAAAATGTAACATTTTAAAATTTGAGATGGAAGAAAAACTATATCATAATTTAAAATTCTAGTTTATATTTATAACACCATACTAGAAATCCAACAAAAATGGAATCTGAGGAGGCCAATTTAGATAAGTCATTTTGTGTCACTCTAACCAGTAATTTTAGAAGCATTCAAACGCCCAGTACTATCTTCTAATCCACCATTATCAATCATTCAAGAAAAAGCTTCAAAGCTTTGAAATTTAATCATAATTCAGAATGGCCCCTACACATAACAGTTGCAATTGCAGTTATACCCAGATCAAACCAATTACAACTTGGCCAAAAATTTCTTTGTCCACTTCTAAGCCAAAAGATTTATGAAACATGGCATTTGTATAGATATACAAGCAATATTTAACATGTGACTTACCCTTTTACCTCCTTCCACTGCCTGAGCCGCCGCCGCCGCCGCCGCCTTCAAACAGCTCGGTGATTCGAGCCTCCATATCCTCCGCCGTGTACTTCAAATACCGGTCTGTACGCTTTGCCAACTCCGGCAAACTCTGGTATCTGCCGATGAACTTTTGATATGCTGGCAACAGAATTTTGGCAACTGAGATTCTTGCTTCTTCTCTAAGCTGATGCTCAAATATCACCCATGTGGATTGGGTTTGGCAGATTTCTTCAAATTGCATATTGAATGATTGGAGCTTCTCCTTCATCACAGCCGGAGCTATAGTGCCACTGTCCATTTTCAATGCTCCGACCACCTTGCTCCATGAGCTTTTCAGGTAGTTTCCGAGGTATTGCCGGTTTTTAACCGAGTGTTTTCGAATCCAATCCTCGCCTAAAACTGACCCTAATTCACTGTCTTTCACTTTCTGAACAATGTATCGCCCATTGTTCATCAGAAACACAGAGCTTAAGGAAAGATCCTTGTATATCTTCGATTTCGCCTCTAAATTGCTCTCTAAAAGCTCCATTATCCAGTCCATTTGAACTGATAAGGAAGACGATGCTGCTGCTCTGTCCTCGAGCTTAGTGTAATCCTTAGAGGGAAGAGCAGCTTCTTCGAAAACTTGCTCTAAAGTCTGCCGAGATTTACAGGCTGCTCTAAGGTAATTCATCACATATCGAGTGATTGGATGAAGGCCGCCCCCCGGGACCGGAGTTTTAGCCGGATCACGGCGGATCAAATTCTCAAGCTCCATGAAGATCCCTTTGATTGTTCCGCCTAACCTTTTCCAGATTGTAATTGCTTCATTTCTAAGCAATAAGCAGTACTGATCTGAAAATACTGAATCGAATTCTGGCATCAAGTCTCTCAAGGTCTCGAACATATCGAGGATTTTGAAAAGTCGTTCCGGCGCGCGGGAGCCAATTGCTACCGCATCTGCAAAATTCAATAGCTGGATAGTCGATCCACGGCAGACCTCCATGAAAGAAAGATCGGCGGTGGAGGAGAGGCCGACGAAGACGCGTTCGCAGAGGCGTCGTTCACTTGGGAAGAGAATTCGAAGGGAGACAGTAATCGCTTTCATCCAGCGTTCAATCTCCTCTTCAAGGTCATGCCATTGCATCTTTTGAACTTCATCGATGCTCAGCTTCTGTAACCCCAACCTAGAAAGACTCTCCTCCAAAAACTCCCTCCTGCAGCTACTGTAAGCGTGTGAACACTCTTTCTCGAACCCAGCCGCTACCATACGCTTCGCTATTTCATGAAGATCGCTGATAGTCCCCGACGGAAGTGCATCGATAACGATGTTGTAGTCCGTCACCGGCTGCGCCACAGGGATCTGGAGAGCATCGCCATCGCCAAGAATTCCTTCCTCATCTTCCTCAGAATCGAAGCAGAAATCCCCCGTTGA

mRNA sequence

ATGTATATATACAAGCAATATTTAACATGTGACTTACCCTTTTACCTCCTTCCACTGCCTGAGCCGCCGCCGCCGCCGCCGCCTTCAAACAGCTCGGTGATTCGAGCCTCCATATCCTCCGCCGTGTACTTCAAATACCGGTCTATTTCTTCAAATTGCATATTGAATGATTGGAGCTTCTCCTTCATCACAGCCGGAGCTATAGTGCCACTGTCCATTTTCAATGCTCCGACCACCTTGCTCCATGAGCTTTTCAGAGCAGCTTCTTCGAAAACTTGCTCTAAAGTCTGCCGAGATTTACAGGCTGCTCTAAGGCCGCCCCCCGGGACCGGAGTTTTAGCCGGATCACGGCGGATCAAATTCTCAAGCTCCATGAAGATCCCTTTGATTGTTCCGCCTAACCTTTTCCAGATTGTCTCGAACATATCGAGGATTTTGAAAAGTCGTTCCGGCGCGCGGGAGCCAATTGCTACCGCATCTGCAAAATTCAATAGCTGGATAGTCGATCCACGGCAGACCTCCATGAAAGAAAGATCGGCGGTGGAGGAGAGGCCGACGAAGACGCGTTCGCAGAGGCGTCGTTCACTTGGGAAGAGAATTCGAAGGGAGACAGTAATCGCTTTCATCCAGCGTTCAATCTCCTCTTCAAGCTTCTGTAACCCCAACCTAGAAAGACTCTCCTCCAAAAACTCCCTCCTGCAGCTACTCCGCTACCATACGCTTCGCTATTTCATGAAGATCGCTGATAGTCCCCGACGGAAGTGCATCGATAACGATGTTGTAGTCCGTCACCGGCTGCGCCACAGGGATCTGGAGAGCATCGCCATCGCCAAGAATTCCTTCCTCATCTTCCTCAGAATCGAAGCAGAAATCCCCCGTTGA

Coding sequence (CDS)

ATGTATATATACAAGCAATATTTAACATGTGACTTACCCTTTTACCTCCTTCCACTGCCTGAGCCGCCGCCGCCGCCGCCGCCTTCAAACAGCTCGGTGATTCGAGCCTCCATATCCTCCGCCGTGTACTTCAAATACCGGTCTATTTCTTCAAATTGCATATTGAATGATTGGAGCTTCTCCTTCATCACAGCCGGAGCTATAGTGCCACTGTCCATTTTCAATGCTCCGACCACCTTGCTCCATGAGCTTTTCAGAGCAGCTTCTTCGAAAACTTGCTCTAAAGTCTGCCGAGATTTACAGGCTGCTCTAAGGCCGCCCCCCGGGACCGGAGTTTTAGCCGGATCACGGCGGATCAAATTCTCAAGCTCCATGAAGATCCCTTTGATTGTTCCGCCTAACCTTTTCCAGATTGTCTCGAACATATCGAGGATTTTGAAAAGTCGTTCCGGCGCGCGGGAGCCAATTGCTACCGCATCTGCAAAATTCAATAGCTGGATAGTCGATCCACGGCAGACCTCCATGAAAGAAAGATCGGCGGTGGAGGAGAGGCCGACGAAGACGCGTTCGCAGAGGCGTCGTTCACTTGGGAAGAGAATTCGAAGGGAGACAGTAATCGCTTTCATCCAGCGTTCAATCTCCTCTTCAAGCTTCTGTAACCCCAACCTAGAAAGACTCTCCTCCAAAAACTCCCTCCTGCAGCTACTCCGCTACCATACGCTTCGCTATTTCATGAAGATCGCTGATAGTCCCCGACGGAAGTGCATCGATAACGATGTTGTAGTCCGTCACCGGCTGCGCCACAGGGATCTGGAGAGCATCGCCATCGCCAAGAATTCCTTCCTCATCTTCCTCAGAATCGAAGCAGAAATCCCCCGTTGA

Protein sequence

MYIYKQYLTCDLPFYLLPLPEPPPPPPPSNSSVIRASISSAVYFKYRSISSNCILNDWSFSFITAGAIVPLSIFNAPTTLLHELFRAASSKTCSKVCRDLQAALRPPPGTGVLAGSRRIKFSSSMKIPLIVPPNLFQIVSNISRILKSRSGAREPIATASAKFNSWIVDPRQTSMKERSAVEERPTKTRSQRRRSLGKRIRRETVIAFIQRSISSSSFCNPNLERLSSKNSLLQLLRYHTLRYFMKIADSPRRKCIDNDVVVRHRLRHRDLESIAIAKNSFLIFLRIEAEIPR

Homology

[Close]

BLAST of CaUC03G050390 vs. NCBI nr
Match: CAA7026366.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-05
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 175 MKERSAVEE--RPTKTRSQRRRSLGKRIRRETVIAFIQRSISSSSFCNP----------- 234
           MKERS  EE  R  KTRSQRRRSLGK+ R     A IQRSISSSS C+            
Sbjct: 1   MKERSVTEETGRSEKTRSQRRRSLGKKTRNTIAAALIQRSISSSSSCHGVSCTSSIVSPL 60

Query: 235 --NLERLSSKNSLLQLL 237
             NL++LSS+NSL +LL
Sbjct: 61  RCNLDKLSSRNSLRRLL 77

[Close]

BLAST of CaUC03G050390 vs. NCBI nr
Match: KAG0467983.1 (hypothetical protein HPP92_017311 [Vanilla planifolia])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-04
Identity = 41/78 (52.56%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 170 PRQTSMKERSAVEERPTKTRSQRRRSLGKRIRRETVIAFIQRSISSSSFCN--------- 229
           PRQ S KERSA+ ERP K R QRRRSLGKRIR  T  AF  R ISSSS  +         
Sbjct: 15  PRQASAKERSAMVERPEKMRWQRRRSLGKRIRNATFTAFTHRQISSSSSAHGVAWISSAA 74

Query: 230 ------PNLERLSSKNSL 233
                 P+ E LSS  SL
Sbjct: 75  AARWRIPSREMLSSMKSL 92

[Close]

BLAST of CaUC03G050390 vs. ExPASy TrEMBL
Match: A0A6D2IMJ7 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS13601 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 175 MKERSAVEE--RPTKTRSQRRRSLGKRIRRETVIAFIQRSISSSSFCNP----------- 234
           MKERS  EE  R  KTRSQRRRSLGK+ R     A IQRSISSSS C+            
Sbjct: 1   MKERSVTEETGRSEKTRSQRRRSLGKKTRNTIAAALIQRSISSSSSCHGVSCTSSIVSPL 60

Query: 235 --NLERLSSKNSLLQLL 237
             NL++LSS+NSL +LL
Sbjct: 61  RCNLDKLSSRNSLRRLL 77

The following BLAST results are available for this feature:

BLAST of CaUC03G050390 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA7026366.1	8.3e-05	54.55	unnamed protein product [Microthlaspi erraticum]	[more]
KAG0467983.1	2.4e-04	52.56	hypothetical protein HPP92_017311 [Vanilla planifolia]	[more]

BLAST of CaUC03G050390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G050390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6D2IMJ7	4.0e-05	54.55	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS13601 ...	[more]

BLAST of CaUC03G050390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G050390.1	CaUC03G050390.1	mRNA