CSPI07G10370.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G10370.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 8485092 .. 8486192 (+)
Sequence length	1010
RNA-Seq Expression	CSPI07G10370.1
Synteny	CSPI07G10370.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAAGTTAACTTTGTTTTTTTTGAGAAGAATGGAAGAATTTGCTTGACATATATAAAATTGATGCTTAGTCCTCAAGTAAATTCACGGTGGTAAAGAAAAGGAAGATGGAATTGGCTCCATCTTCTCCATTCCAAGTGGCGATTATTTGGCCCAAGAGAAAGGTTTAGAAGTTTGCCAAACCACCACCACTGTTGTAAACCCTCTAGATAACTACCATAATTGCTTCCAAGAAGACTTCCGAACTGAAGGGAACAGAAATGATAAAGGAGACAACAAATCAAAACAAATTATTTTGATCTCTCTCATAGTAAATGACACAGAAACAGTATTATAATTAGGAGATACCCTTAAGCAGGTTTTCTGAGGAGGTATCAGAAGAGGATTTCTTTGAATAGAAGATCAATCAAGTCTATATAGAGCTCGGGAAGAATTGGTTGGGTAGCTCTTGATACTGATCTTAGGTGCTTATTTTGTGCAAAGAAGACATTATGGCTATCTCTGATTTTATCATGGGCATGTTCTTTATATCTATACAGTTCTTTTGACAGTTGGTTAATATGGGTTTATGGGCTAGACACTCCCAGTTGAATGGATGAGTTCTGTGCATGAAATAAGGGATCTGCTTATGGCTTGCCTCTATTTTTCTCCATAAAAATTAGTGGTGACTTCATTATAGTTTGCTGGATTCTTGAAAACTTAAACGGGGCAGGATACCTAGAAGTATGAGGGCTTTTAACAATCGAGTGGAAGAGTTGGAGTTGATTGCTATTCCCCTAAAAATCATAGATTTACTTCTGACGGTAGAGAGAGGCCTACTTCCACCAGGATGGTTAAGTTCTTCTTCAGTACAAGACCTTTTGGCAATACTTGAGAAACCTTGCGAGGGTCCTAGGATGACAATGGGGTCCTTCACCTTTTCATTTAAAAACATGTGGCTTGACCATCCGAACTTTTTTTTTTTACGATTGATAATTGGTGGATTCCCACAATTACAGTGGGTGGCCTGGGTATAGAGATTCATTGATACTTGAGGTTGCTAGCTTTTTGAAAACCTGGAACAAAGAAATCTTTGGCATAACTGATGATGAAAAGAAATAA

mRNA sequence

GGGAAAGTTAACTTTGTTTTTTTTGAGAAGAATGGAAGAATTTGCTTGACATATATAAAATTGATGCTTAGTCCTCAAGTAAATTCACGGTGGTAAAGAAAAGGAAGATGGAATTGGCTCCATCTTCTCCATTCCAAGTGGCGATTATTTGGCCCAAGAGAAAGGTTTAGAAGTTTGCCAAACCACCACCACTGTTGTAAACCCTCTAGATAACTACCATAATTGCTTCCAAGAAGACTTCCGAACTGAAGGGAACAGAAATGATAAAGGAGACAACAAATCAAAACAAATTATTTTGATCTCTCTCATAGTAAATGACACAGAAACAGTATTATAATTAGGAGATACCCTTAAGCAGGTTTTCTGAGGAGGTATCAGAAGAGGATTTCTTTGAATAGAAGATCAATCAAGTCTATATAGAGCTCGGGAAGAATTGGTTGGGTAGCTCTTGATACTGATCTTAGGTGCTTATTTTGTGCAAAGAAGACATTATGGCTATCTCTGATTTTATCATGGGCATGTTCTTTATATCTATACAGTTCTTTTGACAGTTGGTTAATATGGGTTTATGGGCTAGACACTCCCAGTTGAATGGATGAGTTCTGTGCATGAAATAAGGGATCTGCTTATGGCTTGCCTCTATTTTTCTCCATAAAAATTAGTGGTGACTTCATTATAGTTTGCTGGATTCTTGAAAACTTAAACGGGGCAGGATACCTAGAAGTATGAGGGCTTTTAACAATCGAGTGGAAGAGTTGGAGTTGATTGCTATTCCCCTAAAAATCATAGATTTACTTCTGACGGTAGAGAGAGGCCTACTTCCACCAGGATGGTTAAGTTCTTCTTCAGTACAAGACCTTTTGGCAATACTTGAGAAACCTTGCGAGGGTCCTAGGATGACAATGGGTGGGTGGCCTGGGTATAGAGATTCATTGATACTTGAGGTTGCTAGCTTTTTGAAAACCTGGAACAAAGAAATCTTTGGCATAACTGATGATGAAAAGAAATAA

Coding sequence (CDS)

ATGAGGGCTTTTAACAATCGAGTGGAAGAGTTGGAGTTGATTGCTATTCCCCTAAAAATCATAGATTTACTTCTGACGGTAGAGAGAGGCCTACTTCCACCAGGATGGTTAAGTTCTTCTTCAGTACAAGACCTTTTGGCAATACTTGAGAAACCTTGCGAGGGTCCTAGGATGACAATGGGTGGGTGGCCTGGGTATAGAGATTCATTGATACTTGAGGTTGCTAGCTTTTTGAAAACCTGGAACAAAGAAATCTTTGGCATAACTGATGATGAAAAGAAATAA

Protein sequence

MRAFNNRVEELELIAIPLKIIDLLLTVERGLLPPGWLSSSSVQDLLAILEKPCEGPRMTMGGWPGYRDSLILEVASFLKTWNKEIFGITDDEKK*

Homology

[Close]

BLAST of CSPI07G10370.1 vs. ExPASy TrEMBL
Match: A0A0A0K5J4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G232480 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.7e-45
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MRAFNNRVEELELIAIPLKIIDLLLTVERGLLPPGWLSSSSVQDLLAILEKPCEGPRMTM 60
          MRAFNN VEELELIAIPLKIIDLLLTVERGLLPPGWLSSSSVQDLLAILEKPCEGPRMTM
Sbjct: 1  MRAFNNPVEELELIAIPLKIIDLLLTVERGLLPPGWLSSSSVQDLLAILEKPCEGPRMTM 60

Query: 61 GGWPGYRDSLILEVASFLKTWNKEIFGITDDEKK 95
          GGWPGYRDSLILEVASFLKTWNKE FGITDDEKK
Sbjct: 61 GGWPGYRDSLILEVASFLKTWNKETFGITDDEKK 94

[Close]

BLAST of CSPI07G10370.1 vs. NCBI nr
Match: KGN44224.1 (hypothetical protein Csa_016400 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-45
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MRAFNNRVEELELIAIPLKIIDLLLTVERGLLPPGWLSSSSVQDLLAILEKPCEGPRMTM 60
          MRAFNN VEELELIAIPLKIIDLLLTVERGLLPPGWLSSSSVQDLLAILEKPCEGPRMTM
Sbjct: 1  MRAFNNPVEELELIAIPLKIIDLLLTVERGLLPPGWLSSSSVQDLLAILEKPCEGPRMTM 60

Query: 61 GGWPGYRDSLILEVASFLKTWNKEIFGITDDEKK 95
          GGWPGYRDSLILEVASFLKTWNKE FGITDDEKK
Sbjct: 61 GGWPGYRDSLILEVASFLKTWNKETFGITDDEKK 94

The following BLAST results are available for this feature:

BLAST of CSPI07G10370.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G10370.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5J4	1.7e-45	97.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G232480 PE=4 SV=1	[more]

BLAST of CSPI07G10370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44224.1	3.5e-45	97.87	hypothetical protein Csa_016400 [Cucumis sativus]	[more]

BLAST of CSPI07G10370.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G10370	CSPI07G10370	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G10370.1.utr5p1	CSPI07G10370.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G10370.1.cds1	CSPI07G10370.1.cds1	CDS
CSPI07G10370.1.cds2	CSPI07G10370.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G10370.1	CSPI07G10370.1-protein	polypeptide