|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGAGAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGACTATTGTGCTCACCTGCACTCATCTTTTGCTGATAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATATGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAATTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTGTGGGCAAGAAGTTGTTACCACAAAGTCTAGCTGAAGCAAGCTTCCTCAAAATGTACCTG mRNA sequence ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGAGAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGACTATTGTGCTCACCTGCACTCATCTTTTGCTGATAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATATGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAATTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTGTGGGCAAGAAGTTGTTACCACAAAGTCTAGCTGAAGCAAGCTTCCTCAAAATGTACCTG Coding sequence (CDS) ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGAGAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGACTATTGTGCTCACCTGCACTCATCTTTTGCTGATAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATATGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAATTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTGTGGGCAAGAAGTTGTTACCACAAAGTCTAGCTGA Protein sequence MQSKRPVTTTFALASSHAKQSTDTMIENLFVEFARDPEVLDYCAHLHSSFADSAIESAPHPDFTSTSIPGPPSVYDEYTASGAKPTAIELVPNFSHGPLKFQAHVSSCGQEVVTTKSS*
Homology
BLAST of CSPI07G09550.1 vs. ExPASy TrEMBL
Match: A0A0A0K752 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 6.4e-50 Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0
Query: 1 MQSKRPVTTTFALASSHAKQSTDTMIENLFVEFARDPEVLDYCAHLHSSFADSAIESAPH 60
MQSKRPVTTTFALASSHAKQSTDTMI+NLFVEFARDPEVL YCAHLHSSFADSAIESAPH
Sbjct: 1 MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60
Query: 61 PDFTSTSIPGPPSVYDEYTASGAKPTAIELVPNFSHGPLKFQAHVSS 108
PDFTSTSIPGPPSV DEYTASGAKPTAIELVP+FSHGPLKFQAHVSS
Sbjct: 61 PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSS 107
BLAST of CSPI07G09550.1 vs. NCBI nr
Match: KGN44137.1 (hypothetical protein Csa_015624 [Cucumis sativus]) HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49 Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0
Query: 1 MQSKRPVTTTFALASSHAKQSTDTMIENLFVEFARDPEVLDYCAHLHSSFADSAIESAPH 60
MQSKRPVTTTFALASSHAKQSTDTMI+NLFVEFARDPEVL YCAHLHSSFADSAIESAPH
Sbjct: 1 MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60
Query: 61 PDFTSTSIPGPPSVYDEYTASGAKPTAIELVPNFSHGPLKFQAHVSS 108
PDFTSTSIPGPPSV DEYTASGAKPTAIELVP+FSHGPLKFQAHVSS
Sbjct: 61 PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSS 107
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K752 | 6.4e-50 | 96.26 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN44137.1 | 1.3e-49 | 96.26 | hypothetical protein Csa_015624 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI07G09550.1.cds1 | CSPI07G09550.1.cds1 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI07G09550.1.utr3p1 | CSPI07G09550.1.utr3p1 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI07G09550.1 | CSPI07G09550.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
