CSPI07G09550 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G09550
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr7: 7539688 .. 7540069 (+)
RNA-Seq ExpressionCSPI07G09550
SyntenyCSPI07G09550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGAGAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGACTATTGTGCTCACCTGCACTCATCTTTTGCTGATAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATATGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAATTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTGTGGGCAAGAAGTTGTTACCACAAAGTCTAGCTGAAGCAAGCTTCCTCAAAATGTACCTG

mRNA sequence

ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGAGAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGACTATTGTGCTCACCTGCACTCATCTTTTGCTGATAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATATGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAATTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTGTGGGCAAGAAGTTGTTACCACAAAGTCTAGCTGAAGCAAGCTTCCTCAAAATGTACCTG

Coding sequence (CDS)

ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGAGAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGACTATTGTGCTCACCTGCACTCATCTTTTGCTGATAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATATGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAATTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTGTGGGCAAGAAGTTGTTACCACAAAGTCTAGCTGA

Protein sequence

MQSKRPVTTTFALASSHAKQSTDTMIENLFVEFARDPEVLDYCAHLHSSFADSAIESAPHPDFTSTSIPGPPSVYDEYTASGAKPTAIELVPNFSHGPLKFQAHVSSCGQEVVTTKSS*
Homology
[Close]
BLAST of CSPI07G09550 vs. ExPASy TrEMBL
Match: A0A0A0K752 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.4e-50
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 1   MQSKRPVTTTFALASSHAKQSTDTMIENLFVEFARDPEVLDYCAHLHSSFADSAIESAPH 60
           MQSKRPVTTTFALASSHAKQSTDTMI+NLFVEFARDPEVL YCAHLHSSFADSAIESAPH
Sbjct: 1   MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60

Query: 61  PDFTSTSIPGPPSVYDEYTASGAKPTAIELVPNFSHGPLKFQAHVSS 108
           PDFTSTSIPGPPSV DEYTASGAKPTAIELVP+FSHGPLKFQAHVSS
Sbjct: 61  PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSS 107

[Close]
BLAST of CSPI07G09550 vs. NCBI nr
Match: KGN44137.1 (hypothetical protein Csa_015624 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 1   MQSKRPVTTTFALASSHAKQSTDTMIENLFVEFARDPEVLDYCAHLHSSFADSAIESAPH 60
           MQSKRPVTTTFALASSHAKQSTDTMI+NLFVEFARDPEVL YCAHLHSSFADSAIESAPH
Sbjct: 1   MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60

Query: 61  PDFTSTSIPGPPSVYDEYTASGAKPTAIELVPNFSHGPLKFQAHVSS 108
           PDFTSTSIPGPPSV DEYTASGAKPTAIELVP+FSHGPLKFQAHVSS
Sbjct: 61  PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSS 107

The following BLAST results are available for this feature:
BLAST of CSPI07G09550 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI07G09550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7526.4e-5096.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1[more]
BLAST of CSPI07G09550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44137.11.3e-4996.26hypothetical protein Csa_015624 [Cucumis sativus][more]
BLAST of CSPI07G09550 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G09550.1CSPI07G09550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane