Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGACCAAGATCTAACAGAGATCTTGGAGCTACTTAGGCATCCAAGCTCCGTCATAGAAGTCGTGGCTAGGGTAGCCGAGGAAGTACCCCAAGGTAGTCCAAGATGGGAGCAGCAAAGGAAAAATTCGTTGGTACTAGAAAATAAAGTTACCACTTTTGTTCTCCGAGATCAGGTTAAGGGAAAGGCTCTGGTAGATGAAGGGGTCAAAGAATCCCAAAATATAGGACCAAGATCGATGGAGAAGAGGATAGATGTCTCAAAAGGGAAATTCGTTACCAAATTGCTTTTGACACAACCACAAAATTTCCCTAAACTTCTTCAACTTGAGGAAAGGATTGCTATCTTAGAAGCCTCGTTCGAAACTTTAGGAAAACAAGTTCAAAAGGAAAGTGACTCGAGTGGCAATGACTCAATGTTGCTACAAGGCGTCGTCAAGGCAAATATAAGCATGCCTGCAAGACAATCTCTTTTCACTAAAGCATAA mRNA sequence ATGGACCAAGATCTAACAGAGATCTTGGAGCTACTTAGGCATCCAAGCTCCGTCATAGAAGTCGTGGCTAGGGTAGCCGAGGAAGTACCCCAAGGTAGTCCAAGATGGGAGCAGCAAAGGAAAAATTCGTTGGTACTAGAAAATAAAGTTACCACTTTTGTTCTCCGAGATCAGGTTAAGGGAAAGGCTCTGGTAGATGAAGGGGTCAAAGAATCCCAAAATATAGGACCAAGATCGATGGAGAAGAGGATAGATGTCTCAAAAGGGAAATTCGTTACCAAATTGCTTTTGACACAACCACAAAATTTCCCTAAACTTCTTCAACTTGAGGAAAGGATTGCTATCTTAGAAGCCTCGTTCGAAACTTTAGGAAAACAAGTTCAAAAGGAAAGTGACTCGAGTGGCAATGACTCAATGTTGCTACAAGGCGTCGTCAAGGCAAATATAAGCATGCCTGCAAGACAATCTCTTTTCACTAAAGCATAA Coding sequence (CDS) ATGGACCAAGATCTAACAGAGATCTTGGAGCTACTTAGGCATCCAAGCTCCGTCATAGAAGTCGTGGCTAGGGTAGCCGAGGAAGTACCCCAAGGTAGTCCAAGATGGGAGCAGCAAAGGAAAAATTCGTTGGTACTAGAAAATAAAGTTACCACTTTTGTTCTCCGAGATCAGGTTAAGGGAAAGGCTCTGGTAGATGAAGGGGTCAAAGAATCCCAAAATATAGGACCAAGATCGATGGAGAAGAGGATAGATGTCTCAAAAGGGAAATTCGTTACCAAATTGCTTTTGACACAACCACAAAATTTCCCTAAACTTCTTCAACTTGAGGAAAGGATTGCTATCTTAGAAGCCTCGTTCGAAACTTTAGGAAAACAAGTTCAAAAGGAAAGTGACTCGAGTGGCAATGACTCAATGTTGCTACAAGGCGTCGTCAAGGCAAATATAAGCATGCCTGCAAGACAATCTCTTTTCACTAAAGCATAA Protein sequence MDQDLTEILELLRHPSSVIEVVARVAEEVPQGSPRWEQQRKNSLVLENKVTTFVLRDQVKGKALVDEGVKESQNIGPRSMEKRIDVSKGKFVTKLLLTQPQNFPKLLQLEERIAILEASFETLGKQVQKESDSSGNDSMLLQGVVKANISMPARQSLFTKA*
Homology
BLAST of CSPI06G22500.1 vs. ExPASy TrEMBL
Match: A0A0A0KJL0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419480 PE=4 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
Query: 1 MDQDLTEILELLRHPSSVIEVVARVAEEVPQGSPRWEQQRKNSLVLENKVTTFVLRDQVK 60
MDQDLTEILELLRHPSSVIEVVARVAEEVPQGSPRWEQQRKNSLVLENKVTTFVLRDQVK
Sbjct: 1 MDQDLTEILELLRHPSSVIEVVARVAEEVPQGSPRWEQQRKNSLVLENKVTTFVLRDQVK 60
Query: 61 GKALVDEGVKESQNIGPRSMEKRIDVSKGKFVTKLLLTQPQNFPKLLQLEERIAILEASF 120
GKALVDEGVKESQNIGP SMEKRIDVSKGKFVTKLLLTQPQNFPKLLQLEERIAILEASF
Sbjct: 61 GKALVDEGVKESQNIGPGSMEKRIDVSKGKFVTKLLLTQPQNFPKLLQLEERIAILEASF 120
Query: 121 ETLGKQVQKESDSSGNDSMLLQGVVKANISMPARQSLFTKA 162
ETLGKQVQKESDSSGNDSMLLQGVVKANISMPARQSLFTKA
Sbjct: 121 ETLGKQVQKESDSSGNDSMLLQGVVKANISMPARQSLFTKA 161
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KJL0 | 1.2e-78 | 99.38 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419480 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 106..126 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI06G22500.1.cds1 | CSPI06G22500.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI06G22500.1 | CSPI06G22500.1-protein | polypeptide |
|
