CSPI06G22500 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G22500
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 20365849 .. 20366334 (-)
RNA-Seq Expression	CSPI06G22500
Synteny	CSPI06G22500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAAGATCTAACAGAGATCTTGGAGCTACTTAGGCATCCAAGCTCCGTCATAGAAGTCGTGGCTAGGGTAGCCGAGGAAGTACCCCAAGGTAGTCCAAGATGGGAGCAGCAAAGGAAAAATTCGTTGGTACTAGAAAATAAAGTTACCACTTTTGTTCTCCGAGATCAGGTTAAGGGAAAGGCTCTGGTAGATGAAGGGGTCAAAGAATCCCAAAATATAGGACCAAGATCGATGGAGAAGAGGATAGATGTCTCAAAAGGGAAATTCGTTACCAAATTGCTTTTGACACAACCACAAAATTTCCCTAAACTTCTTCAACTTGAGGAAAGGATTGCTATCTTAGAAGCCTCGTTCGAAACTTTAGGAAAACAAGTTCAAAAGGAAAGTGACTCGAGTGGCAATGACTCAATGTTGCTACAAGGCGTCGTCAAGGCAAATATAAGCATGCCTGCAAGACAATCTCTTTTCACTAAAGCATAA

mRNA sequence

ATGGACCAAGATCTAACAGAGATCTTGGAGCTACTTAGGCATCCAAGCTCCGTCATAGAAGTCGTGGCTAGGGTAGCCGAGGAAGTACCCCAAGGTAGTCCAAGATGGGAGCAGCAAAGGAAAAATTCGTTGGTACTAGAAAATAAAGTTACCACTTTTGTTCTCCGAGATCAGGTTAAGGGAAAGGCTCTGGTAGATGAAGGGGTCAAAGAATCCCAAAATATAGGACCAAGATCGATGGAGAAGAGGATAGATGTCTCAAAAGGGAAATTCGTTACCAAATTGCTTTTGACACAACCACAAAATTTCCCTAAACTTCTTCAACTTGAGGAAAGGATTGCTATCTTAGAAGCCTCGTTCGAAACTTTAGGAAAACAAGTTCAAAAGGAAAGTGACTCGAGTGGCAATGACTCAATGTTGCTACAAGGCGTCGTCAAGGCAAATATAAGCATGCCTGCAAGACAATCTCTTTTCACTAAAGCATAA

Coding sequence (CDS)

ATGGACCAAGATCTAACAGAGATCTTGGAGCTACTTAGGCATCCAAGCTCCGTCATAGAAGTCGTGGCTAGGGTAGCCGAGGAAGTACCCCAAGGTAGTCCAAGATGGGAGCAGCAAAGGAAAAATTCGTTGGTACTAGAAAATAAAGTTACCACTTTTGTTCTCCGAGATCAGGTTAAGGGAAAGGCTCTGGTAGATGAAGGGGTCAAAGAATCCCAAAATATAGGACCAAGATCGATGGAGAAGAGGATAGATGTCTCAAAAGGGAAATTCGTTACCAAATTGCTTTTGACACAACCACAAAATTTCCCTAAACTTCTTCAACTTGAGGAAAGGATTGCTATCTTAGAAGCCTCGTTCGAAACTTTAGGAAAACAAGTTCAAAAGGAAAGTGACTCGAGTGGCAATGACTCAATGTTGCTACAAGGCGTCGTCAAGGCAAATATAAGCATGCCTGCAAGACAATCTCTTTTCACTAAAGCATAA

Protein sequence

MDQDLTEILELLRHPSSVIEVVARVAEEVPQGSPRWEQQRKNSLVLENKVTTFVLRDQVKGKALVDEGVKESQNIGPRSMEKRIDVSKGKFVTKLLLTQPQNFPKLLQLEERIAILEASFETLGKQVQKESDSSGNDSMLLQGVVKANISMPARQSLFTKA*

Homology

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BLAST of CSPI06G22500 vs. ExPASy TrEMBL
Match: A0A0A0KJL0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419480 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 1   MDQDLTEILELLRHPSSVIEVVARVAEEVPQGSPRWEQQRKNSLVLENKVTTFVLRDQVK 60
           MDQDLTEILELLRHPSSVIEVVARVAEEVPQGSPRWEQQRKNSLVLENKVTTFVLRDQVK
Sbjct: 1   MDQDLTEILELLRHPSSVIEVVARVAEEVPQGSPRWEQQRKNSLVLENKVTTFVLRDQVK 60

Query: 61  GKALVDEGVKESQNIGPRSMEKRIDVSKGKFVTKLLLTQPQNFPKLLQLEERIAILEASF 120
           GKALVDEGVKESQNIGP SMEKRIDVSKGKFVTKLLLTQPQNFPKLLQLEERIAILEASF
Sbjct: 61  GKALVDEGVKESQNIGPGSMEKRIDVSKGKFVTKLLLTQPQNFPKLLQLEERIAILEASF 120

Query: 121 ETLGKQVQKESDSSGNDSMLLQGVVKANISMPARQSLFTKA 162
           ETLGKQVQKESDSSGNDSMLLQGVVKANISMPARQSLFTKA
Sbjct: 121 ETLGKQVQKESDSSGNDSMLLQGVVKANISMPARQSLFTKA 161

The following BLAST results are available for this feature:

BLAST of CSPI06G22500 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G22500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJL0	1.2e-78	99.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419480 PE=4 SV=1	[more]

BLAST of CSPI06G22500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI06G22500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G22500.1	CSPI06G22500.1	mRNA