CSPI06G19920.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G19920.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 17867261 .. 17867647 (-)
Sequence length	387
RNA-Seq Expression	CSPI06G19920.1
Synteny	CSPI06G19920.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGATCCAGAATCTCGCCGGAAAACAATTGTGTATCTCTGTTTCTAAAACCCACCCACATAATTGACCCGATTTCAATTCCAACTGCCATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

mRNA sequence

TTGGGATCCAGAATCTCGCCGGAAAACAATTGTGTATCTCTGTTTCTAAAACCCACCCACATAATTGACCCGATTTCAATTCCAACTGCCATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

Coding sequence (CDS)

ATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

Protein sequence

MDVPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL*

Homology

[Close]

BLAST of CSPI06G19920.1 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MDVPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60
          MDVPGVG QQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM
Sbjct: 1  MDVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60

Query: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 99
          KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL
Sbjct: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 98

[Close]

BLAST of CSPI06G19920.1 vs. NCBI nr
Match: KGN47677.1 (hypothetical protein Csa_018325 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 3.1e-44
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MDVPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60
          MDVPGVG QQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM
Sbjct: 1  MDVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60

Query: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 99
          KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL
Sbjct: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 98

[Close]

BLAST of CSPI06G19920.1 vs. NCBI nr
Match: KAE8647204.1 (hypothetical protein Csa_019006, partial [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 7.4e-06
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 34 VVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRF 88
          +VE    EAS+  VQM MGYK G  KM SVIP +RKLVK MMY SIK F+IS F
Sbjct: 3  MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRKLVKTMMYHSIKCFIISFF 56

[Close]

BLAST of CSPI06G19920.1 vs. NCBI nr
Match: KAG6578934.1 (hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 3  VPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKS 62
          +PGVG ++FP +++ GS+  + VRP GES A       E ++R VQ            KS
Sbjct: 9  IPGVGSEKFPASIIAGSKPAL-VRPIGESPA-----AAELTNRTVQ-----------KKS 68

Query: 63 VIPMKRKLVKRMMYESIKNFVISRF---PSVGS 93
          VIP KR+LVK MMY ++KNF+ S F   PS G+
Sbjct: 69 VIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGA 84

[Close]

BLAST of CSPI06G19920.1 vs. NCBI nr
Match: KAG6578935.1 (hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 3  VPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKS 62
          +P VG ++FP  ++ GS+  + VRP  ES AV      E ++R VQ            KS
Sbjct: 22 IPRVGSKKFPARIIAGSKPAL-VRPIRESPAV-----AELANRTVQ-----------KKS 81

Query: 63 VIPMKRKLVKRMMYESIKNFVISRF---PSVGS 93
          VIP KR+LVK MMY S+KNF+ S F   PS G+
Sbjct: 82 VIPKKRRLVKTMMYHSMKNFIKSVFRRKPSAGA 97

The following BLAST results are available for this feature:

BLAST of CSPI06G19920.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G19920.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH01	1.5e-44	98.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1	[more]

BLAST of CSPI06G19920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47677.1	3.1e-44	98.98	hypothetical protein Csa_018325 [Cucumis sativus]	[more]
KAE8647204.1	7.4e-06	62.96	hypothetical protein Csa_019006, partial [Cucumis sativus]	[more]
KAG6578934.1	1.7e-05	43.01	hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6578935.1	4.1e-04	43.01	hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G19920.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G19920	CSPI06G19920	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G19920.1.cds1	CSPI06G19920.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G19920.1.utr5p1	CSPI06G19920.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G19920.1	CSPI06G19920.1-protein	polypeptide