CSPI06G19920 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G19920
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 17867261 .. 17867647 (-)
RNA-Seq ExpressionCSPI06G19920
SyntenyCSPI06G19920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGGATCCAGAATCTCGCCGGAAAACAATTGTGTATCTCTGTTTCTAAAACCCACCCACATAATTGACCCGATTTCAATTCCAACTGCCATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

mRNA sequence

TTGGGATCCAGAATCTCGCCGGAAAACAATTGTGTATCTCTGTTTCTAAAACCCACCCACATAATTGACCCGATTTCAATTCCAACTGCCATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

Coding sequence (CDS)

ATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

Protein sequence

MDVPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL*
Homology
[Close]
BLAST of CSPI06G19920 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1  MDVPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60
          MDVPGVG QQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM
Sbjct: 1  MDVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60

Query: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 99
          KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL
Sbjct: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 98

[Close]
BLAST of CSPI06G19920 vs. NCBI nr
Match: KGN47677.1 (hypothetical protein Csa_018325 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 3.1e-44
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1  MDVPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60
          MDVPGVG QQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM
Sbjct: 1  MDVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60

Query: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 99
          KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL
Sbjct: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 98

[Close]
BLAST of CSPI06G19920 vs. NCBI nr
Match: KAE8647204.1 (hypothetical protein Csa_019006, partial [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 7.4e-06
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 34 VVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRF 88
          +VE    EAS+  VQM MGYK G  KM SVIP +RKLVK MMY SIK F+IS F
Sbjct: 3  MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRKLVKTMMYHSIKCFIISFF 56

[Close]
BLAST of CSPI06G19920 vs. NCBI nr
Match: KAG6578934.1 (hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 0 

Query: 3  VPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKS 62
          +PGVG ++FP +++ GS+  + VRP GES A       E ++R VQ            KS
Sbjct: 9  IPGVGSEKFPASIIAGSKPAL-VRPIGESPA-----AAELTNRTVQ-----------KKS 68

Query: 63 VIPMKRKLVKRMMYESIKNFVISRF---PSVGS 93
          VIP KR+LVK MMY ++KNF+ S F   PS G+
Sbjct: 69 VIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGA 84

[Close]
BLAST of CSPI06G19920 vs. NCBI nr
Match: KAG6578935.1 (hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0 

Query: 3  VPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKS 62
          +P VG ++FP  ++ GS+  + VRP  ES AV      E ++R VQ            KS
Sbjct: 22 IPRVGSKKFPARIIAGSKPAL-VRPIRESPAV-----AELANRTVQ-----------KKS 81

Query: 63 VIPMKRKLVKRMMYESIKNFVISRF---PSVGS 93
          VIP KR+LVK MMY S+KNF+ S F   PS G+
Sbjct: 82 VIPKKRRLVKTMMYHSMKNFIKSVFRRKPSAGA 97

The following BLAST results are available for this feature:
BLAST of CSPI06G19920 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G19920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH011.5e-4498.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
BLAST of CSPI06G19920 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47677.13.1e-4498.98hypothetical protein Csa_018325 [Cucumis sativus][more]
KAE8647204.17.4e-0662.96hypothetical protein Csa_019006, partial [Cucumis sativus][more]
KAG6578934.11.7e-0543.01hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578935.14.1e-0443.01hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI06G19920 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G19920.1CSPI06G19920.1mRNA