CSPI04G15820.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI04G15820.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	30S ribosomal protein S31, chloroplastic
Location	Chr4: 13134758 .. 13135738 (-)
Sequence length	788
RNA-Seq Expression	CSPI04G15820.1
Synteny	CSPI04G15820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCGAAACTTATCTTTGTGATTCTCCCACAAGCGCTACCTCGCTCTGCTTCATCTTCATCCATCCATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATGTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTAGTATGTGTGTGTTAGCTTCAATTGAAGTATTTACATCGCTTCTGTTCACTTTTCATTGCTTAATTTCTGTTCTGTCTTTACTTTTTTTTCAGTATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGTATGTGTCTATATGTTTTCTTGAGTTTCTGTTTCTGTCTTCCATAAGTTTCTCTATCGTTTTTTATATTTTGAATTTTTTTTCGGGGGGAAAATGTTCAGGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAGTCATAGGTCATCCTAATTCTGTTTATTTGAATGTGTTTTCTTAATTCAGAAGGTACTTCCACTTCTTCTAATAGCATTATTTTTGTATGAATTCTTCAGTCGCTTATCGGCTTCATGAATTTGTTCTTCGTTTTGAGTCAACTCCAAGTACGGCCTCTCTCTCTTTTTCCTTCTATCTTTGTCTTTAACCATTTCTGAGCAAGAGTCTAAGCATCGATGCTTCATAGATAGTCATTGCGTCACTACAGGCGTTTGTTTATGGAATTTAAGTTAACTTCCGCATACATGTTATTCGAAGACTAGAGTTGAGCTATTTAATATTAACGTTAGATATAGAAAGATTCTACCAGCTCCTTGTTGGTTTT

mRNA sequence

ACTCGAAACTTATCTTTGTGATTCTCCCACAAGCGCTACCTCGCTCTGCTTCATCTTCATCCATCCATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATGTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTATATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAGTCATAGGTCATCCTAATTCTGTTTATTTGAATGTGTTTTCTTAATTCAGAAGGTACTTCCACTTCTTCTAATAGCATTATTTTTGTATGAATTCTTCAGTCGCTTATCGGCTTCATGAATTTGTTCTTCGTTTTGAGTCAACTCCAAGTACGGCCTCTCTCTCTTTTTCCTTCTATCTTTGTCTTTAACCATTTCTGAGCAAGAGTCTAAGCATCGATGCTTCATAGATAGTCATTGCGTCACTACAGGCGTTTGTTTATGGAATTTAAGTTAACTTCCGCATACATGTTATTCGAAGACTAGAGTTGAGCTATTTAATATTAACGTTAGATATAGAAAGATTCTACCAGCTCCTTGTTGGTTTT

Coding sequence (CDS)

ATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATGTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTATATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAG

Protein sequence

MASLPFGLLQAPSQSPRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS*

Homology

[Close]

BLAST of CSPI04G15820.1 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-26
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 20  SFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARPRD 79
           S S  E  G SL +  T   ++ST SS SSIP +YCGRGD+KT +GKRFNHS+GNARPR+
Sbjct: 22  SSSHSETAGVSL-SCFTHQFSLST-SSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRN 81

Query: 80  KTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 119
           K+KGRG  RVP PP+PPRKDKF+++EKIKI+IDESLF +
Sbjct: 82  KSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118

[Close]

BLAST of CSPI04G15820.1 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-14
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQSPR--FFSFSKCEAL-GTSLRASSTASLAISTPSSPSSIPAIYCGR 60
           MASL   LL  PS +     FSFS  +++ G SL +  T SL+ S  +SP ++P IYCGR
Sbjct: 1   MASL---LLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSP-ALPLIYCGR 60

Query: 61  GDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFD 103
           GD+KT +GKRFNHS+GNARP++K KGRG P+ P  P      K D
Sbjct: 61  GDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 101

[Close]

BLAST of CSPI04G15820.1 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 44 PSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARP-RDKTKGRGTPRVPTPPSPP 97
          P   +   A+ CGRGDKKT+RGKRF  SYGNARP R+K   R   RV  P S P
Sbjct: 21 PVISAEAEAVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

[Close]

BLAST of CSPI04G15820.1 vs. ExPASy TrEMBL
Match: A0A0A0KXY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQSPRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60
           MASLPFGLLQAPSQSPRFFSFSK EALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK
Sbjct: 1   MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60

Query: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 119
           KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS
Sbjct: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 118

[Close]

BLAST of CSPI04G15820.1 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.6e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQS----PRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           M SLPFGLLQAPSQS    P +FSFSK E LGTSLRASSTASLAISTPSSPSSIPA+YCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 119
           RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CSPI04G15820.1 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.6e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQS----PRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           M SLPFGLLQAPSQS    P +FSFSK E LGTSLRASSTASLAISTPSSPSSIPA+YCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 119
           RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CSPI04G15820.1 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.5e-46
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQ----SPRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA SQ    SPRFFSFSK E LGTSLRA STASLA S  SSPSS+PA+YCG
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 111

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 117
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PPRKDKF+D+EKIKIEID+SLF
Sbjct: 112 RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLF 170

[Close]

BLAST of CSPI04G15820.1 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 96/120 (80.00%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 1   MASLPFGLLQA----PSQSPRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA    P+ SPR FSFSK E LGTSLR S+      S  SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 116

[Close]

BLAST of CSPI04G15820.1 vs. NCBI nr
Match: XP_004147884.1 (30S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypothetical protein Csa_018058 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 5.5e-56
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQSPRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60
           MASLPFGLLQAPSQSPRFFSFSK EALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK
Sbjct: 1   MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60

Query: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 119
           KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS
Sbjct: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 118

[Close]

BLAST of CSPI04G15820.1 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.3e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQS----PRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           M SLPFGLLQAPSQS    P +FSFSK E LGTSLRASSTASLAISTPSSPSSIPA+YCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 119
           RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CSPI04G15820.1 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 198.7 bits (504), Expect = 2.7e-47
Identity = 105/122 (86.07%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQ----SPRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA SQ    SPRFFSFSK E LGTSLRASSTASLA ST SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 119
           RGDKKTE+GKRFN SYGNARPR+KTKGRGTPRVPTPPSPPRKDKF+D+EKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

[Close]

BLAST of CSPI04G15820.1 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 1   MASLPFGLLQAPSQ----SPRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA SQ    SPRFFSFSK E LGTSLRA STASLA S  SSPSS+PA+YCG
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 111

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 117
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PPRKDKF+D+EKIKIEID+SLF
Sbjct: 112 RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLF 170

[Close]

BLAST of CSPI04G15820.1 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 5.9e-42
Identity = 97/120 (80.83%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MASLPFGLLQA----PSQSPRFFSFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA    P+ SPR FSFSK E LGTSLR S+     IS  SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GISATSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 116

[Close]

BLAST of CSPI04G15820.1 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-27
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 20  SFSKCEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARPRD 79
           S S  E  G SL +  T   ++ST SS SSIP +YCGRGD+KT +GKRFNHS+GNARPR+
Sbjct: 22  SSSHSETAGVSL-SCFTHQFSLST-SSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRN 81

Query: 80  KTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 119
           K+KGRG  RVP PP+PPRKDKF+++EKIKI+IDESLF +
Sbjct: 82  KSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118

The following BLAST results are available for this feature:

BLAST of CSPI04G15820.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80439	2.1e-26	64.65	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]
P47910	1.4e-14	50.48	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
P47909	3.5e-05	55.56	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CSPI04G15820.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXY4	2.7e-56	99.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1	[more]
A0A5A7TU27	2.6e-51	90.16	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BL51	2.6e-51	90.16	30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228...	[more]
A0A6J1DDL3	9.5e-46	85.00	30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1HRX4	1.1e-41	80.00	30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]

BLAST of CSPI04G15820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147884.1	5.5e-56	99.15	30S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypotheti...	[more]
XP_008449316.1	5.3e-51	90.16	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1...	[more]
XP_038882305.1	2.7e-47	86.07	30S ribosomal protein S31, chloroplastic [Benincasa hispida]	[more]
XP_022151467.1	2.0e-45	85.00	30S ribosomal protein S31, chloroplastic [Momordica charantia]	[more]
XP_023517799.1	5.9e-42	80.83	30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI04G15820.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38140.1	1.5e-27	64.65	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 19..99 e-value: 6.9E-29 score: 99.9
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 56..80 e-value: 6.2E-11 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..50
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..116
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G15820	CSPI04G15820	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G15820.1.utr3p1	CSPI04G15820.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G15820.1.cds3	CSPI04G15820.1.cds3	CDS
CSPI04G15820.1.cds2	CSPI04G15820.1.cds2	CDS
CSPI04G15820.1.cds1	CSPI04G15820.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G15820.1.utr5p1	CSPI04G15820.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G15820.1	CSPI04G15820.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding