CSPI03G44760.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G44760.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	calcium homeostasis endoplasmic reticulum protein
Location	Chr3: 38305808 .. 38306559 (-)
Sequence length	360
RNA-Seq Expression	CSPI03G44760.1
Synteny	CSPI03G44760.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCTGTTGTGGGTTATTCCTGGAATGCTGAGAAAAATGAAGATTGGAGGTGGAGTCCCATACTCTTCCATGAACCCTTTGGATATTCCTTTCCTCCATCCAATATATCTCCCTTTGAAGTTCTCAAGAGAGTGTCGAAGCTCTCTAAAGGTGAGGTTAATCTCCCATAAGGACCCATGAGTTTTGATGGTAAAGAGGATGATTTTGAGTATGAGAGAGAGAGTTACGTGTACGTAAGGGTGGAGCTTGCATTCCTCCTCCTCCCAACGTTCAGGTTGACCTAGAGACTGGTGCTTACGCTGGTGGAGATGTAGAACGAAAAGGCTCTAAAAGATTAGGACTTGAACCAACAACCAACTCAAACGAGAATAGTGTCAATATGATGATGTTTATACTTCTTATAGAAAACAAAGAAGTACCAATTACCACTCCTCTACAAGCACAAGGCCCACAACATAGTGAAAAGAAACCGTTCAATTTATTACTAGGAGTGACCTCATGTTTGGAACATGTAACGTACCAACCTTTTTTTTCTATTTTCTTCTAAGTTTTGCTGAATTTGTTCATCATTATTAGGACATTAGCATCAGATTCAAACAGTTGAATTGTGCATTTAGTTTTGATCTAAAGAATCATTCTCGAGAAAACATACATTACAAATTGAGACTCGGTTTTCTTTTAGGATTTTGACTTCTCGAGTAAATTGAACAGTGAGTTTTCTAGTGCATGGATGCTTTACAACAGTTGA

mRNA sequence

ATGCCTCCTGTTGTGGGTTATTCCTGGAATGCTGAGAAAAATGAAGATTGGAGGTGGAGTCCCATACTCTTCCATGAACCCTTTGGATATTCCTTTCCTCCATCCAATATATCTCCCTTTGAAGTTCTCAAGAGAGTGTCGAAGCTCTCTAAAGGTGAGGGTGGAGCTTGCATTCCTCCTCCTCCCAACGTTCAGGTTGACCTAGAGACTGGTGCTTACGCTGGTGGAGATGTAGAACGAAAAGGCTCTAAAAGATTAGGACTTGAACCAACAACCAACTCAAACGAGAATAGTGATTTTGACTTCTCGAGTAAATTGAACAGTGAGTTTTCTAGTGCATGGATGCTTTACAACAGTTGA

Coding sequence (CDS)

ATGCCTCCTGTTGTGGGTTATTCCTGGAATGCTGAGAAAAATGAAGATTGGAGGTGGAGTCCCATACTCTTCCATGAACCCTTTGGATATTCCTTTCCTCCATCCAATATATCTCCCTTTGAAGTTCTCAAGAGAGTGTCGAAGCTCTCTAAAGGTGAGGGTGGAGCTTGCATTCCTCCTCCTCCCAACGTTCAGGTTGACCTAGAGACTGGTGCTTACGCTGGTGGAGATGTAGAACGAAAAGGCTCTAAAAGATTAGGACTTGAACCAACAACCAACTCAAACGAGAATAGTGATTTTGACTTCTCGAGTAAATTGAACAGTGAGTTTTCTAGTGCATGGATGCTTTACAACAGTTGA

Protein sequence

MPPVVGYSWNAEKNEDWRWSPILFHEPFGYSFPPSNISPFEVLKRVSKLSKGEGGACIPPPPNVQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFDFSSKLNSEFSSAWMLYNS*

Homology

[Close]

BLAST of CSPI03G44760.1 vs. ExPASy TrEMBL
Match: A0A0A0LJH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G882920 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.1e-60
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MPPVVGYSWNAEKNEDWRWSPILFHEPFGYSFPPSNISPFEVLKRVSKLSKGEGGACIPP 60
           MPPVVGYSWNAEKNEDWRWSPILFHEPFGYSFPPSNISPFEVLKRVSKL KGEGGACIPP
Sbjct: 1   MPPVVGYSWNAEKNEDWRWSPILFHEPFGYSFPPSNISPFEVLKRVSKLFKGEGGACIPP 60

Query: 61  PPNVQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFDFSSKLNSEFSSAWMLYNS 120
           PPNVQVDLETGAYAGGDVERKGS+RLGL+PTTNSNENSDFD SSKLNSEFSSA MLYNS
Sbjct: 61  PPNVQVDLETGAYAGGDVERKGSERLGLKPTTNSNENSDFDLSSKLNSEFSSAGMLYNS 119

[Close]

BLAST of CSPI03G44760.1 vs. ExPASy TrEMBL
Match: A0A6J1DTD5 (calcium homeostasis endoplasmic reticulum protein OS=Momordica charantia OX=3673 GN=LOC111024140 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-14
Identity = 52/98 (53.06%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPSNISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 558 PPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDTKDDDYEYEREPQVRKGGACIPPPPN 617

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD ETGAYA G V+RKGS RLGL  T N NE+S +D
Sbjct: 618 LQVDPETGAYADGSVDRKGSGRLGLGATPNPNEDSQYD 655

[Close]

BLAST of CSPI03G44760.1 vs. ExPASy TrEMBL
Match: A0A0A0KSG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G215110 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-14
Identity = 52/98 (53.06%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPS ISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 565 PPSTISPSEVLERVSKFFKEIGEVNPSEGPMGSDGKDDDFEYEREPPVRKGGACIPPPPN 624

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD ETGAYA G V+RKGS RLGL  TTN NE+S +D
Sbjct: 625 LQVDPETGAYADGSVDRKGSGRLGLGATTNPNEDSQYD 662

[Close]

BLAST of CSPI03G44760.1 vs. ExPASy TrEMBL
Match: A0A6J1IF87 (calcium homeostasis endoplasmic reticulum protein OS=Cucurbita maxima OX=3661 GN=LOC111476699 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.3e-14
Identity = 51/98 (52.04%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPSNISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 562 PPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDDYEYEREPPVRKGGACIPPPPN 621

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD ETGAYA G V+RKGS RLGL  ++N NE+S +D
Sbjct: 622 LQVDPETGAYADGSVDRKGSGRLGLGASSNPNEDSQYD 659

[Close]

BLAST of CSPI03G44760.1 vs. ExPASy TrEMBL
Match: A0A5A7T2P6 (Calcium homeostasis endoplasmic reticulum protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00010 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.7e-14
Identity = 51/98 (52.04%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPS ISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 565 PPSTISPSEVLERVSKFFKEIGEVNPSEGPMSSDGKDEDFEYEREPPVRKGGACIPPPPN 624

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD +TGAYA G V+RKGS RLGL  TTN NE+S +D
Sbjct: 625 LQVDPDTGAYADGSVDRKGSGRLGLGATTNPNEDSQYD 662

[Close]

BLAST of CSPI03G44760.1 vs. NCBI nr
Match: XP_038897955.1 (calcium homeostasis endoplasmic reticulum protein [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-14
Identity = 52/98 (53.06%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPSNISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 564 PPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDAKDDDFEYEREPPVRKGGACIPPPPN 623

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD ETGAYA G V+RKGS RLGL  T N NE+S +D
Sbjct: 624 LQVDPETGAYADGSVDRKGSGRLGLGATANPNEDSQYD 661

[Close]

BLAST of CSPI03G44760.1 vs. NCBI nr
Match: XP_004148173.1 (calcium homeostasis endoplasmic reticulum protein [Cucumis sativus] >KGN50691.1 hypothetical protein Csa_005819 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-14
Identity = 52/98 (53.06%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPS ISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 565 PPSTISPSEVLERVSKFFKEIGEVNPSEGPMGSDGKDDDFEYEREPPVRKGGACIPPPPN 624

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD ETGAYA G V+RKGS RLGL  TTN NE+S +D
Sbjct: 625 LQVDPETGAYADGSVDRKGSGRLGLGATTNPNEDSQYD 662

[Close]

BLAST of CSPI03G44760.1 vs. NCBI nr
Match: XP_022157442.1 (calcium homeostasis endoplasmic reticulum protein [Momordica charantia] >XP_022157443.1 calcium homeostasis endoplasmic reticulum protein [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-14
Identity = 52/98 (53.06%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPSNISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 558 PPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDTKDDDYEYEREPQVRKGGACIPPPPN 617

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD ETGAYA G V+RKGS RLGL  T N NE+S +D
Sbjct: 618 LQVDPETGAYADGSVDRKGSGRLGLGATPNPNEDSQYD 655

[Close]

BLAST of CSPI03G44760.1 vs. NCBI nr
Match: XP_022976247.1 (calcium homeostasis endoplasmic reticulum protein [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 9.0e-14
Identity = 51/98 (52.04%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPSNISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 562 PPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDDYEYEREPPVRKGGACIPPPPN 621

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD ETGAYA G V+RKGS RLGL  ++N NE+S +D
Sbjct: 622 LQVDPETGAYADGSVDRKGSGRLGLGASSNPNEDSQYD 659

[Close]

BLAST of CSPI03G44760.1 vs. NCBI nr
Match: XP_023536597.1 (calcium homeostasis endoplasmic reticulum protein isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536598.1 calcium homeostasis endoplasmic reticulum protein isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 51/98 (52.04%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPSNISP EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 564 PPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDDYEYDREPPVRKGGACIPPPPN 623

Query: 93  VQVDLETGAYAGGDVERKGSKRLGLEPTTNSNENSDFD 102
           +QVD ETGAYA G V+RKGS RLGL  + N NE+S +D
Sbjct: 624 LQVDPETGAYADGSVDRKGSGRLGLGASANPNEDSQYD 661

[Close]

BLAST of CSPI03G44760.1 vs. TAIR 10
Match: AT4G31200.2 (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 43/99 (43.43%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPS+    EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 527 PPSDTPQSEVLERVSKFFKEIGEVNPSEGPMGSESQDDYDNYERDSPQRKGGACIPPPPN 586

Query: 93  VQVDLETGAYAGGDVERK-GSKRLGLEPTTNSNENSDFD 102
           +QVD ETG YA G  ++K GS RLGL  T + NE + +D
Sbjct: 587 LQVDPETGTYADGSTDKKSGSGRLGLGATADPNEPTQYD 625

[Close]

BLAST of CSPI03G44760.1 vs. TAIR 10
Match: AT4G31200.3 (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 43/99 (43.43%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPS+    EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 527 PPSDTPQSEVLERVSKFFKEIGEVNPSEGPMGSESQDDYDNYERDSPQRKGGACIPPPPN 586

Query: 93  VQVDLETGAYAGGDVERK-GSKRLGLEPTTNSNENSDFD 102
           +QVD ETG YA G  ++K GS RLGL  T + NE + +D
Sbjct: 587 LQVDPETGTYADGSTDKKSGSGRLGLGATADPNEPTQYD 625

[Close]

BLAST of CSPI03G44760.1 vs. TAIR 10
Match: AT4G31200.1 (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 43/99 (43.43%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 33  PPSNISPFEVLKRVSKLSK--GE---------------------------GGACIPPPPN 92
           PPS+    EVL+RVSK  K  GE                           GGACIPPPPN
Sbjct: 527 PPSDTPQSEVLERVSKFFKEIGEVNPSEGPMGSESQDDYDNYERDSPQRKGGACIPPPPN 586

Query: 93  VQVDLETGAYAGGDVERK-GSKRLGLEPTTNSNENSDFD 102
           +QVD ETG YA G  ++K GS RLGL  T + NE + +D
Sbjct: 587 LQVDPETGTYADGSTDKKSGSGRLGLGATADPNEPTQYD 625

The following BLAST results are available for this feature:

BLAST of CSPI03G44760.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G44760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJH0	1.1e-60	95.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G882920 PE=4 SV=1	[more]
A0A6J1DTD5	2.5e-14	53.06	calcium homeostasis endoplasmic reticulum protein OS=Momordica charantia OX=3673...	[more]
A0A0A0KSG0	2.5e-14	53.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G215110 PE=4 SV=1	[more]
A0A6J1IF87	4.3e-14	52.04	calcium homeostasis endoplasmic reticulum protein OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7T2P6	5.7e-14	52.04	Calcium homeostasis endoplasmic reticulum protein-like OS=Cucumis melo var. maku...	[more]

BLAST of CSPI03G44760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897955.1	4.0e-14	53.06	calcium homeostasis endoplasmic reticulum protein [Benincasa hispida]	[more]
XP_004148173.1	5.3e-14	53.06	calcium homeostasis endoplasmic reticulum protein [Cucumis sativus] >KGN50691.1 ...	[more]
XP_022157442.1	5.3e-14	53.06	calcium homeostasis endoplasmic reticulum protein [Momordica charantia] >XP_0221...	[more]
XP_022976247.1	9.0e-14	52.04	calcium homeostasis endoplasmic reticulum protein [Cucurbita maxima]	[more]
XP_023536597.1	1.2e-13	52.04	calcium homeostasis endoplasmic reticulum protein isoform X1 [Cucurbita pepo sub...	[more]

BLAST of CSPI03G44760.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31200.2	1.5e-11	43.43	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein	[more]
AT4G31200.3	1.5e-11	43.43	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein	[more]
AT4G31200.1	1.5e-11	43.43	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G44760	CSPI03G44760	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G44760.1.cds3	CSPI03G44760.1.cds3	CDS
CSPI03G44760.1.cds2	CSPI03G44760.1.cds2	CDS
CSPI03G44760.1.cds1	CSPI03G44760.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G44760.1	CSPI03G44760.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process