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CSPI03G01080.2 (mRNA) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATTTTGATGAAAACCTTATCCTCTTTCACTGCTCTCATCCATGGCGTCCGTCTCTGCTTCGCATAGTGAATACAAGATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGGTACTCTTCTCATTTCGCTTCCCCATTGCAACATTTCTTTGAGTTCTGTAACAACCTTTTCTACTATAACTACTTCAAATTATACCTAAACGATGAAGTATTCCTGAATCCGAACTGTTTATCAATGGATTATCCATAAGTTCATCAATCAACAATCGGTTTCTTAAAGATTAGGAGTTAGGATTTAGGATTTAGGATTTACTTTATCAGGGATACTTGTTAAACCTAGAACGATCCATTGATCCATTTCAATGACTACTACTTGAATTATAATGAAACGGAAGAAGACGAAGGATTCTTTAATCTGAACTATTCATCAATGGAATTTCAGTTTTGATTAGTAGTTAGGATTTAAATTTATTCTCTAGTTTGAGACATGTTTGCGTAGGTATTAACTTCGAATGTGTTGGGTGCTCTTTGTGAAACCTACCTCGGGCATCAAGATTTCTTTTTCCATAATTTTTAGGAAAGAGTGATAATTCCTCCAAGAAGATAAAAGAATTTACTACACCTAAACGCAAAAGAACATTGGTTTGACTGTTTGAGTGTGCGAAAACATGCGTGAATGAATGTTGCTTTTAATTATTTTTATGTAGGCTTTGGTTTTCTTCAATTTTAAAGTTTTTCACGTGTGTATCCTAGTTTCTTAAATTTTTTATGTGGCTGTAGTGAGGTTTTTTACCAAGTAGGATTGATATTTATTAAACTTAGAACGACTCGTTGATTATTTTTATTTTCTCAGCAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACAAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGACGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGCCTTTTTATCTTCTTCCTTTTTTTTTTTTTTTCTTTCTTATGTTCTTCGTTGATAAATATTATAGTTTCTTAGGAGTGACGTGAGAAGTAAAAACGAGTATAATTCAGTTTTAGCTCAATAGTAATCACTAATAGTCTTCTATTCTCGAGTCAGGAAGTCTAAATTTTCATCTCATATAATTATCATAGGGTTGTAGTTTGAACCTTTTCACTTCATTATACTAAAAAAAAGCTATACCATAAGTAATGTTACTTGTAAATTAATTAAAAGAGG AAATTTTGATGAAAACCTTATCCTCTTTCACTGCTCTCATCCATGGCGTCCGTCTCTGCTTCGCATAGTGAATACAAGATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGCAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACAAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGACGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGCCTTTTTATCTTCTTCCTTTTTTTTTTTTTTTCTTTCTTATGTTCTTCGTTGATAAATATTATAGTTTCTTAGGAGTGACGTGAGAAGTAAAAACGAGTATAATTCAGTTTTAGCTCAATAGTAATCACTAATAGTCTTCTATTCTCGAGTCAGGAAGTCTAAATTTTCATCTCATATAATTATCATAGGGTTGTAGTTTGAACCTTTTCACTTCATTATACTAAAAAAAAGCTATACCATAAGTAATGTTACTTGTAAATTAATTAAAAGAGG ATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGCAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACAAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGACGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAG MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK* Homology
BLAST of CSPI03G01080.2 vs. ExPASy Swiss-Prot
Match: O49668 (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 1.1e-57 Identity = 115/165 (69.70%), Postives = 140/165 (84.85%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. ExPASy Swiss-Prot
Match: Q9LTD9 (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09 Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. ExPASy TrEMBL
Match: A0A0A0L507 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 1.2e-110 Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. ExPASy TrEMBL
Match: A0A1S3BKQ0 (protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1) HSP 1 Score: 372.5 bits (955), Expect = 1.2e-99 Identity = 195/219 (89.04%), Postives = 203/219 (92.69%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. ExPASy TrEMBL
Match: A0A1S3BKY8 (protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1) HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97 Identity = 194/219 (88.58%), Postives = 202/219 (92.24%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. ExPASy TrEMBL
Match: A0A6J1CUC6 (protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 8.2e-80 Identity = 165/214 (77.10%), Postives = 186/214 (86.92%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. ExPASy TrEMBL
Match: A0A6J1KYA4 (protein PAM68, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498663 PE=4 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 1.2e-75 Identity = 165/216 (76.39%), Postives = 180/216 (83.33%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. NCBI nr
Match: XP_011650314.1 (protein PAM68, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 415.6 bits (1067), Expect = 2.6e-112 Identity = 213/214 (99.53%), Postives = 214/214 (100.00%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. NCBI nr
Match: XP_004146119.1 (protein PAM68, chloroplastic isoform X2 [Cucumis sativus] >KGN55697.1 hypothetical protein Csa_010628 [Cucumis sativus]) HSP 1 Score: 409.1 bits (1050), Expect = 2.4e-110 Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. NCBI nr
Match: XP_008448604.1 (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 372.5 bits (955), Expect = 2.5e-99 Identity = 195/219 (89.04%), Postives = 203/219 (92.69%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. NCBI nr
Match: XP_008448605.1 (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 365.5 bits (937), Expect = 3.1e-97 Identity = 194/219 (88.58%), Postives = 202/219 (92.24%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. NCBI nr
Match: XP_038877162.1 (protein PAM68, chloroplastic isoform X1 [Benincasa hispida]) HSP 1 Score: 323.2 bits (827), Expect = 1.7e-84 Identity = 171/214 (79.91%), Postives = 191/214 (89.25%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. TAIR 10
Match: AT4G19100.1 (Protein of unknown function (DUF3464) ) HSP 1 Score: 224.6 bits (571), Expect = 7.8e-59 Identity = 115/165 (69.70%), Postives = 140/165 (84.85%), Query Frame = 0
BLAST of CSPI03G01080.2 vs. TAIR 10
Match: AT5G52780.1 (Protein of unknown function (DUF3464) ) HSP 1 Score: 63.5 bits (153), Expect = 2.3e-10 Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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