CSPI03G01080 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G01080
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein PAM68, chloroplastic
Location	Chr3: 769018 .. 770811 (-)
RNA-Seq Expression	CSPI03G01080
Synteny	CSPI03G01080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTTGATGAAAACCTTATCCTCTTTCACTGCTCTCATCCATGGCGTCCGTCTCTGCTTCGCATAGTGAATACAAGATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGGTACTCTTCTCATTTCGCTTCCCCATTGCAACATTTCTTTGAGTTCTGTAACAACCTTTTCTACTATAACTACTTCAAATTATACCTAAACGATGAAGTATTCCTGAATCCGAACTGTTTATCAATGGATTATCCATAAGTTCATCAATCAACAATCGGTTTCTTAAAGATTAGGAGTTAGGATTTAGGATTTAGGATTTACTTTATCAGGGATACTTGTTAAACCTAGAACGATCCATTGATCCATTTCAATGACTACTACTTGAATTATAATGAAACGGAAGAAGACGAAGGATTCTTTAATCTGAACTATTCATCAATGGAATTTCAGTTTTGATTAGTAGTTAGGATTTAAATTTATTCTCTAGTTTGAGACATGTTTGCGTAGGTATTAACTTCGAATGTGTTGGGTGCTCTTTGTGAAACCTACCTCGGGCATCAAGATTTCTTTTTCCATAATTTTTAGGAAAGAGTGATAATTCCTCCAAGAAGATAAAAGAATTTACTACACCTAAACGCAAAAGAACATTGGTTTGACTGTTTGAGTGTGCGAAAACATGCGTGAATGAATGTTGCTTTTAATTATTTTTATGTAGGCTTTGGTTTTCTTCAATTTTAAAGTTTTTCACGTGTGTATCCTAGTTTCTTAAATTTTTTATGTGGCTGTAGTGAGGTTTTTTACCAAGTAGGATTGATATTTATTAAACTTAGAACGACTCGTTGATTATTTTTATTTTCTCAGCAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACAAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGACGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGCCTTTTTATCTTCTTCCTTTTTTTTTTTTTTTCTTTCTTATGTTCTTCGTTGATAAATATTATAGTTTCTTAGGAGTGACGTGAGAAGTAAAAACGAGTATAATTCAGTTTTAGCTCAATAGTAATCACTAATAGTCTTCTATTCTCGAGTCAGGAAGTCTAAATTTTCATCTCATATAATTATCATAGGGTTGTAGTTTGAACCTTTTCACTTCATTATACTAAAAAAAAGCTATACCATAAGTAATGTTACTTGTAAATTAATTAAAAGAGG

mRNA sequence

AAATTTTGATGAAAACCTTATCCTCTTTCACTGCTCTCATCCATGGCGTCCGTCTCTGCTTCGCATAGTGAATACAAGATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACAAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGACGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGCCTTTTTATCTTCTTCCTTTTTTTTTTTTTTTCTTTCTTATGTTCTTCGTTGATAAATATTATAGTTTCTTAGGAGTGACGTGAGAAGTAAAAACGAGTATAATTCAGTTTTAGCTCAATAGTAATCACTAATAGTCTTCTATTCTCGAGTCAGGAAGTCTAAATTTTCATCTCATATAATTATCATAGGGTTGTAGTTTGAACCTTTTCACTTCATTATACTAAAAAAAAGCTATACCATAAGTAATGTTACTTGTAAATTAATTAAAAGAGG

Coding sequence (CDS)

ATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACAAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGACGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAG

Protein sequence

MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK*

Homology

[Close]

BLAST of CSPI03G01080 vs. ExPASy Swiss-Prot
Match: O49668 (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-57
Identity = 115/165 (69.70%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 52  NQTHTNRPTSLNATLRRPKGFGPASRK-KKTKKTR--REGSEDDDNEEEEEEDEEEEEEG 111
           N+   +R   L+AT+  PKGFGP  +K KK+KK +   +  EDDD+E+E+++DEE+E E 
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 112 GVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 171
           GVIPE+VTNRM+SRMGFTVG+PLFIGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 172 LLGVSYGIVSSSWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           L GVSYGIVSSSWDPLR+GSLLGWNEA+KNWPVFW+S W  S+K+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of CSPI03G01080 vs. ExPASy Swiss-Prot
Match: Q9LTD9 (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 60  TSLNATLRRPKGFGPASRKKKTKKTRR--EGSEDDDNEEEEEEDEEEEEEGGVIPEVVTN 119
           T++      PK   P ++ +   K     +G +     E+    + + E+   IP+ V  
Sbjct: 19  TTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFE 78

Query: 120 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 179
           RMM R+  +VG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +
Sbjct: 79  RMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSL 138

Query: 180 SSSWDPLRDGSLLGWNEAQKNWPVFWK 205
           S++ DP +  SL G  EA++NW   WK
Sbjct: 139 STNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of CSPI03G01080 vs. ExPASy TrEMBL
Match: A0A0A0L507 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.7e-112
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120
           SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120

Query: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           WDPLR+GSLLGWNEAQKNWPVFWKSIWGGSNKK
Sbjct: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of CSPI03G01080 vs. ExPASy TrEMBL
Match: A0A1S3BKY8 (protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.0e-99
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNC+FS+HIKS ERNCFPN RPTI  NQNQT TN PT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTI--NQNQTRTNHPT 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEVV 120
           SLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEVV
Sbjct: 61  SLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVV 120

Query: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180
           TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG
Sbjct: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180

Query: 181 IVSSSWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           IVSSSWDP+R+GSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of CSPI03G01080 vs. ExPASy TrEMBL
Match: A0A1S3BKQ0 (protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97
Identity = 194/219 (88.58%), Postives = 202/219 (92.24%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60
           MAAIAGSLNLPLAPSNLPLLRIK KNC+FS+HIKS ERNCFPN RPTI  NQNQT TN P
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTI--NQNQTRTNHP 60

Query: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEV 120
           TSLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEV
Sbjct: 61  TSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEV 120

Query: 121 VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY 180
           VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY
Sbjct: 121 VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY 180

Query: 181 GIVSSSWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           GIVSSSWDP+R+GSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 GIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of CSPI03G01080 vs. ExPASy TrEMBL
Match: A0A6J1CUC6 (protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.3e-81
Identity = 165/213 (77.46%), Postives = 186/213 (87.32%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAIAGSLNLPLAPSNLP LRIK+NCKFS+H KS+ER  FP LRP+I   QNQT  N+P 
Sbjct: 1   MAAIAGSLNLPLAPSNLPSLRIKRNCKFSIHSKSHERIRFPLLRPSI--YQNQTRINQPA 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120
            L ATLR PKGFGPA +K+K K    + S+++D +E+E+EDE+EE EGGVIPEVVTNRMM
Sbjct: 61  ILRATLRSPKGFGPAPKKRKKKS---QESDEEDEDEDEDEDEDEEAEGGVIPEVVTNRMM 120

Query: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVP+WVP IVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           WDP+R+GSLLGWNEAQKNWPVFW+SIW  S+KK
Sbjct: 181 WDPMREGSLLGWNEAQKNWPVFWQSIWAKSDKK 208

[Close]

BLAST of CSPI03G01080 vs. ExPASy TrEMBL
Match: A0A6J1GB37 (protein PAM68, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452558 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.4e-77
Identity = 161/214 (75.23%), Postives = 181/214 (84.58%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAI GSLNLPLAPS LP L I +N   S+  KS +RN F  LRP++   QNQT TN   
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRNYNLSIQSKSQKRNYFSLLRPSL--YQNQTRTNHTL 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120
            +NATLR PKGFGPA RKKK KKT+  G  ++++E+EE+E+EEEEE+ GVIPEVVTNRM+
Sbjct: 61  IVNATLRSPKGFGPAPRKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMI 120

Query: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPLRDGSLLGWNEAQKNWPVFWKSIW-GGSNKK 214
           WDP+R+GSLLGWNEAQKNWPVFW+SIW GGSNKK
Sbjct: 181 WDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 212

[Close]

BLAST of CSPI03G01080 vs. NCBI nr
Match: XP_004146119.1 (protein PAM68, chloroplastic isoform X2 [Cucumis sativus] >KGN55697.1 hypothetical protein Csa_010628 [Cucumis sativus])

HSP 1 Score: 413.7 bits (1062), Expect = 9.7e-112
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120
           SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120

Query: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           WDPLR+GSLLGWNEAQKNWPVFWKSIWGGSNKK
Sbjct: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of CSPI03G01080 vs. NCBI nr
Match: XP_011650314.1 (protein PAM68, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 409.1 bits (1050), Expect = 2.4e-110
Identity = 212/214 (99.07%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60
           MAAIAGSLNLPLAPSNLPLLRIK KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60

Query: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120
           TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM
Sbjct: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120

Query: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180
           MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS
Sbjct: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180

Query: 181 SWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           SWDPLR+GSLLGWNEAQKNWPVFWKSIWGGSNKK
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214

[Close]

BLAST of CSPI03G01080 vs. NCBI nr
Match: XP_008448605.1 (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNC+FS+HIKS ERNCFPN RPTI  NQNQT TN PT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTI--NQNQTRTNHPT 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEVV 120
           SLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEVV
Sbjct: 61  SLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVV 120

Query: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180
           TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG
Sbjct: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180

Query: 181 IVSSSWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           IVSSSWDP+R+GSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of CSPI03G01080 vs. NCBI nr
Match: XP_008448604.1 (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 365.5 bits (937), Expect = 3.0e-97
Identity = 194/219 (88.58%), Postives = 202/219 (92.24%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60
           MAAIAGSLNLPLAPSNLPLLRIK KNC+FS+HIKS ERNCFPN RPTI  NQNQT TN P
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTI--NQNQTRTNHP 60

Query: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEV 120
           TSLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEV
Sbjct: 61  TSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEV 120

Query: 121 VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY 180
           VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY
Sbjct: 121 VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY 180

Query: 181 GIVSSSWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           GIVSSSWDP+R+GSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 GIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of CSPI03G01080 vs. NCBI nr
Match: XP_038877162.1 (protein PAM68, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 327.8 bits (839), Expect = 7.0e-86
Identity = 171/213 (80.28%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60
           MAAI+GSLNLPLAPSNL   RIK+NCK S+H+KS ERNCFP L P+I  NQ + HTN+ T
Sbjct: 1   MAAISGSLNLPLAPSNLSSPRIKRNCKISIHLKSYERNCFPKLIPSI--NQRRIHTNQST 60

Query: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120
           +LNATLRR KGFGPA R+KK KKT+REGSED+  +E+E   +EEEEEGGVIPEVVTNRM+
Sbjct: 61  TLNATLRRQKGFGPAPRRKKMKKTKREGSEDEHGDEDE---DEEEEEGGVIPEVVTNRMI 120

Query: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           WDP+R+GSLLGWNEAQKNWPVFW+S+WGGSNKK
Sbjct: 181 WDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 208

[Close]

BLAST of CSPI03G01080 vs. TAIR 10
Match: AT4G19100.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 224.6 bits (571), Expect = 7.8e-59
Identity = 115/165 (69.70%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 52  NQTHTNRPTSLNATLRRPKGFGPASRK-KKTKKTR--REGSEDDDNEEEEEEDEEEEEEG 111
           N+   +R   L+AT+  PKGFGP  +K KK+KK +   +  EDDD+E+E+++DEE+E E 
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 112 GVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 171
           GVIPE+VTNRM+SRMGFTVG+PLFIGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 172 LLGVSYGIVSSSWDPLRDGSLLGWNEAQKNWPVFWKSIWGGSNKK 214
           L GVSYGIVSSSWDPLR+GSLLGWNEA+KNWPVFW+S W  S+K+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of CSPI03G01080 vs. TAIR 10
Match: AT5G52780.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-10
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 60  TSLNATLRRPKGFGPASRKKKTKKTRR--EGSEDDDNEEEEEEDEEEEEEGGVIPEVVTN 119
           T++      PK   P ++ +   K     +G +     E+    + + E+   IP+ V  
Sbjct: 19  TTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFE 78

Query: 120 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 179
           RMM R+  +VG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +
Sbjct: 79  RMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSL 138

Query: 180 SSSWDPLRDGSLLGWNEAQKNWPVFWK 205
           S++ DP +  SL G  EA++NW   WK
Sbjct: 139 STNLDPAKTNSLFGLKEAKENWVEMWK 165

The following BLAST results are available for this feature:

BLAST of CSPI03G01080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49668	1.1e-57	69.70	Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1	[more]
Q9LTD9	3.2e-09	31.97	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ...	[more]

BLAST of CSPI03G01080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L507	4.7e-112	99.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1	[more]
A0A1S3BKY8	6.0e-99	88.99	protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
A0A1S3BKQ0	1.5e-97	88.58	protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
A0A6J1CUC6	3.3e-81	77.46	protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4...	[more]
A0A6J1GB37	6.4e-77	75.23	protein PAM68, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452558 PE=4 ...	[more]

BLAST of CSPI03G01080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146119.1	9.7e-112	99.53	protein PAM68, chloroplastic isoform X2 [Cucumis sativus] >KGN55697.1 hypothetic...	[more]
XP_011650314.1	2.4e-110	99.07	protein PAM68, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_008448605.1	1.2e-98	88.99	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_008448604.1	3.0e-97	88.58	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_038877162.1	7.0e-86	80.28	protein PAM68, chloroplastic isoform X1 [Benincasa hispida]	[more]

BLAST of CSPI03G01080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19100.1	7.8e-59	69.70	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	2.3e-10	31.97	Protein of unknown function (DUF3464)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..111
None	No IPR available	PANTHER	PTHR34575:SF1	PROTEIN PAM68, CHLOROPLASTIC	coord: 27..213
IPR021855	PAM68-like	PFAM	PF11947	DUF3464	coord: 68..206 e-value: 3.9E-51 score: 172.7
IPR021855	PAM68-like	PANTHER	PTHR34575	PROTEIN PAM68, CHLOROPLASTIC	coord: 27..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G01080.1	CSPI03G01080.1	mRNA
CSPI03G01080.2	CSPI03G01080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0016021	integral component of membrane