CSPI02G05730.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G05730.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 4191792 .. 4192613 (-)
Sequence length	753
RNA-Seq Expression	CSPI02G05730.1
Synteny	CSPI02G05730.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCAGAGGCTCAATACATCCCTGAAAAAGAAGAAGCAAGCAGAGACTGAAAATTGAAAAGAGAAGTGAAAAATGAAAAAAAATGGGGAATTGAAGATGATAGAAACCTGCGTTGTTGTGAGGATTATGAATTGAATGAGGAATCTAGGGAAAGAAGTGGGGTTGTAAAGAAGAGTCAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGTGGCGATGTGCTCCAATTGGTATCGCCAATTCAGAGAAATGGAGTTGGAAATTTTGGGTAACAGAAAAGTAAATTGTTAGATGGCGGTGTTGCTCCCGCTACGGTGCGTTCAATCCACGTCACTTCCG

mRNA sequence

ACGCAGAGGCTCAATACATCCCTGAAAAAGAAGAAGCAAGCAGAGACTGAAAATTGAAAAGAGAAGTGAAAAATGAAAAAAAATGGGGAATTGAAGATGATAGAAACCTGCGTTGTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGTGGCGATGTGCTCCAATTGGTATCGCCAATTCAGAGAAATGGAGTTGGAAATTTTGGGTAACAGAAAAGTAAATTGTTAGATGGCGGTGTTGCTCCCGCTACGGTGCGTTCAATCCACGTCACTTCCG

Coding sequence (CDS)

ATGAAAAAAAATGGGGAATTGAAGATGATAGAAACCTGCGTTGTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGTGGCGATGTGCTCCAATTGGTATCGCCAATTCAGAGAAATGGAGTTGGAAATTTTGGGTAACAGAAAAGTAAATTGTTAG

Protein sequence

MKKNGELKMIETCVVKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKWVAMCSNWYRQFREMELEILGNRKVNC*

Homology

The following BLAST results are available for this feature:

BLAST of CSPI02G05730.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G05730.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G05730.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G05730.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..186
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 68..87 score: 39.44 coord: 16..30 score: 37.78 coord: 46..63 score: 41.98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G05730	CSPI02G05730	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G05730.1.utr3p1	CSPI02G05730.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G05730.1.cds2	CSPI02G05730.1.cds2	CDS
CSPI02G05730.1.cds1	CSPI02G05730.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G05730.1.utr5p1	CSPI02G05730.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G05730.1	CSPI02G05730.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding